Strain Fitness in Sphingobium sp. HT1-2 around GFF3333

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,384,109	+		GFF3331	0.53	+1.0
3,384,109	+		GFF3331	0.53	+1.6
3,384,109	+		GFF3331	0.53	-1.4
3,384,139	+		GFF3331	0.57	+1.0
3,384,161	+		GFF3331	0.61	-0.3
3,384,195	+		GFF3331	0.67	+0.5
3,384,215	+		GFF3331	0.70	-0.0
3,384,215	+		GFF3331	0.70	-0.8
3,384,215	-		GFF3331	0.70	-0.6
3,384,223	-		GFF3331	0.71	-0.5
3,384,223	-		GFF3331	0.71	-1.2
3,384,230	+		GFF3331	0.72	+0.9
3,384,239	-		GFF3331	0.74	-1.0
3,384,250	+		GFF3331	0.75	+0.4
3,384,264	+		GFF3331	0.78	+1.0
3,384,265	-		GFF3331	0.78	-0.4
3,384,265	-		GFF3331	0.78	-0.3
3,384,307	-		GFF3331	0.85	-0.6
3,384,311	-		GFF3331	0.85	+0.7
3,384,331	+		GFF3331	0.89	-0.6
3,384,336	-		GFF3331	0.89	-0.2
3,384,363	+				+0.3
3,384,364	-				+0.9
3,384,377	+				-0.0
3,384,384	+				-1.5
3,384,385	-				-1.4
3,384,392	-				-0.2
3,384,395	+				-0.8
3,384,403	-				-0.8
3,384,405	-				-1.0
3,384,463	+				-0.0
3,384,474	+				-0.2
3,384,474	+				+0.9
3,384,474	+				+0.4
3,384,474	+				-1.0
3,384,482	-				+0.2
3,384,482	-				-0.5
3,384,482	-				+0.1
3,384,482	-				-0.2
3,384,482	-				-0.1
3,384,482	-				-0.2
3,384,482	-				-1.0
3,384,482	-				-0.2
3,384,482	-				-1.2
3,384,484	+				-1.3
3,384,488	+				+0.4
3,384,496	-				-0.3
3,384,539	-				-0.9
3,384,539	-				-0.5
3,384,541	+				-0.4
3,384,546	+		GFF3332	0.10	-1.2
3,384,546	+		GFF3332	0.10	+0.7
3,384,546	+		GFF3332	0.10	+0.1
3,384,554	-		GFF3332	0.13	-1.5
3,384,564	-		GFF3332	0.16	+0.1
3,384,565	+		GFF3332	0.16	+0.7
3,384,577	+		GFF3332	0.20	+0.2
3,384,582	+		GFF3332	0.22	+0.2
3,384,585	-		GFF3332	0.23	+0.7
3,384,586	+		GFF3332	0.23	-0.1
3,384,617	-		GFF3332	0.34	-1.6
3,384,649	+		GFF3332	0.44	+1.6
3,384,660	+		GFF3332	0.48	-0.4
3,384,718	+		GFF3332	0.67	-0.8
3,384,723	+		GFF3332	0.69	-1.4
3,384,726	+		GFF3332	0.70	+0.6
3,384,726	+		GFF3332	0.70	-1.0
3,384,726	+		GFF3332	0.70	-0.1
3,384,726	+		GFF3332	0.70	-1.2
3,384,734	-		GFF3332	0.73	-0.1
3,384,736	+		GFF3332	0.73	-0.8
3,384,770	+		GFF3332	0.85	-2.1
3,384,848	-				+0.5
3,384,848	-				-0.6
3,384,961	+				+0.1
3,384,986	+				+0.4
3,384,989	+				+0.2
3,384,989	+				-0.4
3,384,997	-				-0.8
3,385,059	+				-0.9
3,385,059	+				+1.0
3,385,059	+				-1.2
3,385,059	+				-0.9
3,385,059	+				+0.2
3,385,059	+				-1.5
3,385,059	+				+0.0
3,385,060	+				+0.5
3,385,060	+				+0.4
3,385,061	+				-0.8
3,385,067	-				-0.5
3,385,067	-				-1.5
3,385,067	-				+0.1
3,385,067	-				-0.0
3,385,067	-				-0.7
3,385,067	-				+0.5
3,385,068	-				+0.8
3,385,068	-				-0.7
3,385,069	-				-1.3
3,385,071	+				-0.4
3,385,078	+				+0.8
3,385,099	-				-0.3
3,385,101	+				-1.0
3,385,101	+				+1.1
3,385,101	+				-1.0
3,385,101	+				-0.8
3,385,101	+				-0.7
3,385,101	+				-1.2
3,385,101	+				+0.3
3,385,101	+				+0.4
3,385,109	-				-1.2
3,385,109	-				-0.2
3,385,109	-				-0.2
3,385,109	-				-1.3
3,385,112	+				+0.6
3,385,114	-				-0.3
3,385,114	-				-1.2
3,385,120	-				-0.1
3,385,120	-				-1.3
3,385,125	+				+0.3
3,385,155	-				-0.0
3,385,174	+				+0.2
3,385,182	+				-0.4
3,385,182	+				-2.0
3,385,182	+				-1.9
3,385,182	+				+0.5
3,385,183	+				-1.9
3,385,190	-				+0.4
3,385,190	-				+0.4
3,385,190	-				-1.3
3,385,190	-				-0.7
3,385,190	-				-0.4
3,385,190	-				+1.4
3,385,190	-				+0.6
3,385,190	-				+0.3
3,385,191	-				+0.3
3,385,192	+				-0.2
3,385,200	-				+0.3
3,385,226	+				-0.2
3,385,226	+				+0.6
3,385,228	+				-0.3
3,385,228	+				-0.5
3,385,228	+				+0.5
3,385,228	+				-1.7
3,385,228	+				-0.5
3,385,228	+				-1.0
3,385,228	+				+0.3
3,385,228	+				+0.4
3,385,228	+				+1.2
3,385,228	+				+1.2
3,385,228	+				+0.6
3,385,228	+				-1.6
3,385,228	+				+1.8
3,385,228	+				+0.7
3,385,228	+				-1.1
3,385,228	+				+0.2
3,385,233	+				+0.7
3,385,233	+				-1.2
3,385,234	-				-0.4
3,385,234	-				+0.7
3,385,234	-				-0.9
3,385,236	-		GFF3333	0.10	+0.2
3,385,236	-		GFF3333	0.10	-0.4
3,385,236	-		GFF3333	0.10	-0.8
3,385,236	-		GFF3333	0.10	-1.4
3,385,236	-		GFF3333	0.10	-1.0
3,385,236	-		GFF3333	0.10	-0.2
3,385,236	-		GFF3333	0.10	+1.0
3,385,236	-		GFF3333	0.10	-0.3
3,385,236	-		GFF3333	0.10	-1.6
3,385,236	-		GFF3333	0.10	-1.5
3,385,236	-		GFF3333	0.10	-1.0
3,385,238	+		GFF3333	0.10	-0.4
3,385,238	+		GFF3333	0.10	-2.2
3,385,238	+		GFF3333	0.10	-2.0
3,385,241	-		GFF3333	0.10	+0.9
3,385,241	-		GFF3333	0.10	+1.6
3,385,241	-		GFF3333	0.10	+0.3
3,385,246	-		GFF3333	0.11	+1.1
3,385,246	-		GFF3333	0.11	+0.0
3,385,246	-		GFF3333	0.11	+0.1
3,385,246	-		GFF3333	0.11	-2.0
3,385,246	-		GFF3333	0.11	+0.3
3,385,251	+		GFF3333	0.11	-0.5
3,385,260	+		GFF3333	0.12	-0.7
3,385,260	+		GFF3333	0.12	+1.6
3,385,262	+		GFF3333	0.12	+0.5
3,385,268	-		GFF3333	0.13	-1.0
3,385,278	-		GFF3333	0.13	-1.5
3,385,283	+		GFF3333	0.14	-2.6
3,385,341	-		GFF3333	0.18	+0.4
3,385,343	+		GFF3333	0.18	-1.1
3,385,350	+		GFF3333	0.19	-0.6
3,385,427	+		GFF3333	0.25	-0.6
3,385,427	+		GFF3333	0.25	-1.6
3,385,435	-		GFF3333	0.25	-0.4
3,385,435	-		GFF3333	0.25	-0.5
3,385,435	-		GFF3333	0.25	-2.2
3,385,470	+		GFF3333	0.28	-1.5
3,385,482	-		GFF3333	0.29	-2.2
3,385,549	-		GFF3333	0.34	+1.0
3,385,550	+		GFF3333	0.34	-0.0
3,385,568	+		GFF3333	0.36	-0.3
3,385,576	-		GFF3333	0.36	+0.0
3,385,595	-		GFF3333	0.38	+1.1
3,385,630	-		GFF3333	0.41	+1.2
3,385,630	-		GFF3333	0.41	-1.2
3,385,630	-		GFF3333	0.41	-1.2
3,385,630	-		GFF3333	0.41	-0.2
3,385,632	+		GFF3333	0.41	-1.4
3,385,635	-		GFF3333	0.41	+0.1
3,385,640	+		GFF3333	0.41	-0.7
3,385,648	-		GFF3333	0.42	+0.1
3,385,648	-		GFF3333	0.42	-1.7
3,385,648	-		GFF3333	0.42	+0.2
3,385,664	-		GFF3333	0.43	+0.1
3,385,681	-		GFF3333	0.44	+1.3
3,385,681	-		GFF3333	0.44	-0.1
3,385,705	+		GFF3333	0.46	+0.3
3,385,713	-		GFF3333	0.47	-0.1
3,385,728	+		GFF3333	0.48	+0.9
3,385,738	-		GFF3333	0.49	+0.1
3,385,747	+		GFF3333	0.50	+0.1
3,385,752	+		GFF3333	0.50	-0.7
3,385,755	-		GFF3333	0.50	-0.1
3,385,760	-		GFF3333	0.51	-0.0
3,385,761	+		GFF3333	0.51	+1.0
3,385,761	+		GFF3333	0.51	+0.3
3,385,761	+		GFF3333	0.51	+0.6
3,385,761	+		GFF3333	0.51	+0.7
3,385,761	+		GFF3333	0.51	+0.4
3,385,761	+		GFF3333	0.51	-1.0
3,385,766	+		GFF3333	0.51	-1.6
3,385,766	+		GFF3333	0.51	-1.2
3,385,769	-		GFF3333	0.51	+0.3
3,385,797	+		GFF3333	0.53	-0.8
3,385,825	+		GFF3333	0.56	+0.4
3,385,825	+		GFF3333	0.56	-0.4
3,385,828	-		GFF3333	0.56	+0.6
3,385,828	-		GFF3333	0.56	+0.2
3,385,831	+		GFF3333	0.56	-0.1
3,385,837	+		GFF3333	0.57	-1.4
3,385,837	+		GFF3333	0.57	-1.2
3,385,838	+		GFF3333	0.57	-0.3
3,385,839	-		GFF3333	0.57	+0.9
3,385,845	-		GFF3333	0.57	+0.8
3,385,846	-		GFF3333	0.57	-0.4
3,385,907	+		GFF3333	0.62	+0.2
3,385,910	-		GFF3333	0.62	+0.1
3,385,913	+		GFF3333	0.62	+0.2
3,385,915	-		GFF3333	0.63	+1.5
3,385,937	+		GFF3333	0.64	-0.9
3,385,937	+		GFF3333	0.64	-0.8
3,386,010	+		GFF3333	0.70	+0.6
3,386,015	+		GFF3333	0.70	-1.6
3,386,015	+		GFF3333	0.70	+0.8
3,386,015	+		GFF3333	0.70	-1.1
3,386,015	+		GFF3333	0.70	-2.2
3,386,020	+		GFF3333	0.71	+0.6
3,386,020	+		GFF3333	0.71	+1.3
3,386,020	+		GFF3333	0.71	+0.1
3,386,023	-		GFF3333	0.71	-0.5
3,386,023	-		GFF3333	0.71	-1.4
3,386,023	-		GFF3333	0.71	-1.0
3,386,032	+		GFF3333	0.72	-0.3
3,386,042	-		GFF3333	0.72	+0.3
3,386,061	-		GFF3333	0.74	-0.2
3,386,071	-		GFF3333	0.75	+0.3
3,386,073	-		GFF3333	0.75	-0.4
3,386,079	+		GFF3333	0.75	-2.5
3,386,086	+		GFF3333	0.76	+0.2
3,386,091	+		GFF3333	0.76	-0.2
3,386,099	-		GFF3333	0.77	+0.6
3,386,159	+		GFF3333	0.81	-0.2
3,386,174	+		GFF3333	0.83	-0.7
3,386,191	-		GFF3333	0.84	+0.5
3,386,206	+		GFF3333	0.85	-0.7
3,386,206	+		GFF3333	0.85	-0.0
3,386,206	+		GFF3333	0.85	-2.2
3,386,206	+		GFF3333	0.85	+0.3
3,386,206	+		GFF3333	0.85	-1.4
3,386,206	+		GFF3333	0.85	+0.1
3,386,206	+		GFF3333	0.85	+0.3
3,386,206	+		GFF3333	0.85	+1.4
3,386,206	+		GFF3333	0.85	+1.2
3,386,208	-		GFF3333	0.85	-0.8
3,386,208	-		GFF3333	0.85	-0.7
3,386,214	-		GFF3333	0.86	+0.2
3,386,214	-		GFF3333	0.86	+0.1
3,386,214	-		GFF3333	0.86	+1.3
3,386,214	-		GFF3333	0.86	-1.3
3,386,214	-		GFF3333	0.86	-1.0
3,386,214	-		GFF3333	0.86	+0.2
3,386,214	-		GFF3333	0.86	+1.1
3,386,214	-		GFF3333	0.86	-1.4
3,386,214	-		GFF3333	0.86	-0.7
3,386,214	-		GFF3333	0.86	-0.9
3,386,229	-		GFF3333	0.87	-0.2
3,386,234	-		GFF3333	0.87	-1.2
3,386,234	-		GFF3333	0.87	+0.6
3,386,237	+		GFF3333	0.87	-0.1
3,386,247	-		GFF3333	0.88	-0.6
3,386,343	+				+0.5
3,386,343	+				-0.4
3,386,343	+				-0.4
3,386,349	+				-1.7
3,386,349	+				+0.2
3,386,349	+				-1.8
3,386,357	-				+0.1
3,386,357	-				-0.4
3,386,357	-				-0.2
3,386,357	-				-0.8
3,386,357	-				-1.4
3,386,357	-				-0.2
3,386,359	+				-1.1
3,386,359	+				-0.4
3,386,366	+				-0.4
3,386,367	-				-1.1
3,386,367	-				-1.4
3,386,367	-				-1.4
3,386,378	-				-1.9
3,386,378	-				-1.7
3,386,412	+				-0.3
3,386,422	-				+0.2
3,386,427	+				+0.8
3,386,433	+				-2.0
3,386,433	+				+0.8
3,386,433	+				+1.1
3,386,434	-				+0.2
3,386,441	-				-0.0
3,386,441	-				+0.6
3,386,478	+				-0.6
3,386,502	+				-3.0
3,386,510	-				-1.4
3,386,539	+				-1.2
3,386,589	+		GFF3334	0.10	-1.6
3,386,713	+		GFF3334	0.23	-2.0
3,386,721	-		GFF3334	0.23	-1.5
3,386,755	-		GFF3334	0.27	-2.2
3,386,795	+		GFF3334	0.31	-1.5
3,386,853	-		GFF3334	0.37	-1.5
3,386,961	-		GFF3334	0.47	-1.6
3,387,051	+		GFF3334	0.56	-1.2
3,387,096	+		GFF3334	0.61	-1.9
3,387,100	-		GFF3334	0.61	-2.2
3,387,125	-		GFF3334	0.63	-1.4
3,387,238	-		GFF3334	0.75	-1.8
3,387,248	-		GFF3334	0.76	-1.6
3,387,279	+		GFF3334	0.79	-1.2
3,387,323	-		GFF3334	0.83	-1.2
3,387,333	-		GFF3334	0.84	-2.2
3,387,340	-		GFF3334	0.85	-1.5