Strain Fitness in Sphingobium sp. HT1-2 around GFF3273

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,325,351	-		GFF3272	0.28	+1.0
3,325,363	+		GFF3272	0.29	-0.9
3,325,367	+		GFF3272	0.29	-2.3
3,325,379	+		GFF3272	0.30	+1.7
3,325,387	-		GFF3272	0.31	+0.4
3,325,387	-		GFF3272	0.31	-0.5
3,325,391	+		GFF3272	0.31	+0.2
3,325,392	-		GFF3272	0.31	+0.5
3,325,394	-		GFF3272	0.31	-1.4
3,325,396	+		GFF3272	0.31	-1.4
3,325,399	-		GFF3272	0.32	-0.3
3,325,401	+		GFF3272	0.32	-1.6
3,325,401	-		GFF3272	0.32	-1.2
3,325,404	-		GFF3272	0.32	-1.6
3,325,404	-		GFF3272	0.32	-0.8
3,325,428	-		GFF3272	0.34	+1.1
3,325,428	-		GFF3272	0.34	-0.5
3,325,428	-		GFF3272	0.34	-0.4
3,325,443	+		GFF3272	0.35	-2.7
3,325,451	-		GFF3272	0.36	+0.7
3,325,458	+		GFF3272	0.36	-0.2
3,325,458	+		GFF3272	0.36	+0.8
3,325,466	-		GFF3272	0.37	+1.4
3,325,466	-		GFF3272	0.37	-1.6
3,325,491	+		GFF3272	0.39	-2.6
3,325,491	+		GFF3272	0.39	-1.6
3,325,492	+		GFF3272	0.39	+0.9
3,325,496	+		GFF3272	0.39	-0.4
3,325,496	+		GFF3272	0.39	-0.1
3,325,496	+		GFF3272	0.39	-1.6
3,325,496	+		GFF3272	0.39	-1.2
3,325,498	+		GFF3272	0.39	-1.4
3,325,499	-		GFF3272	0.39	+0.5
3,325,499	-		GFF3272	0.39	-0.4
3,325,504	-		GFF3272	0.40	+0.1
3,325,504	-		GFF3272	0.40	+0.0
3,325,522	+		GFF3272	0.41	+0.6
3,325,522	+		GFF3272	0.41	-0.2
3,325,522	+		GFF3272	0.41	-1.6
3,325,522	+		GFF3272	0.41	+0.5
3,325,522	+		GFF3272	0.41	+0.1
3,325,530	-		GFF3272	0.42	+0.7
3,325,542	+		GFF3272	0.43	-1.8
3,325,559	+		GFF3272	0.44	+0.9
3,325,620	+		GFF3272	0.49	-2.8
3,325,624	+		GFF3272	0.49	+0.1
3,325,628	-		GFF3272	0.49	+0.5
3,325,634	+		GFF3272	0.50	-0.2
3,325,647	-		GFF3272	0.51	+0.6
3,325,647	-		GFF3272	0.51	+1.0
3,325,647	-		GFF3272	0.51	-1.0
3,325,662	+		GFF3272	0.52	+1.1
3,325,662	+		GFF3272	0.52	-0.1
3,325,662	+		GFF3272	0.52	+0.4
3,325,662	+		GFF3272	0.52	+0.4
3,325,662	+		GFF3272	0.52	+1.5
3,325,662	+		GFF3272	0.52	+0.2
3,325,662	+		GFF3272	0.52	-0.0
3,325,670	-		GFF3272	0.52	+0.1
3,325,670	-		GFF3272	0.52	+0.5
3,325,670	-		GFF3272	0.52	-1.3
3,325,670	-		GFF3272	0.52	-1.9
3,325,670	-		GFF3272	0.52	-0.5
3,325,675	-		GFF3272	0.53	+0.4
3,325,707	+		GFF3272	0.55	-0.4
3,325,707	+		GFF3272	0.55	+0.0
3,325,707	+		GFF3272	0.55	-0.4
3,325,707	+		GFF3272	0.55	-0.2
3,325,707	+		GFF3272	0.55	-0.5
3,325,712	+		GFF3272	0.56	-2.6
3,325,712	+		GFF3272	0.56	-1.3
3,325,712	+		GFF3272	0.56	-0.9
3,325,715	-		GFF3272	0.56	-0.3
3,325,715	-		GFF3272	0.56	-0.3
3,325,722	+		GFF3272	0.56	-2.1
3,325,722	-		GFF3272	0.56	+0.2
3,325,722	-		GFF3272	0.56	+0.2
3,325,723	+		GFF3272	0.56	+0.6
3,325,723	+		GFF3272	0.56	-1.5
3,325,723	+		GFF3272	0.56	+1.1
3,325,731	-		GFF3272	0.57	-0.5
3,325,731	-		GFF3272	0.57	-0.1
3,325,731	-		GFF3272	0.57	-1.9
3,325,731	-		GFF3272	0.57	-1.3
3,325,731	-		GFF3272	0.57	-0.2
3,325,746	+		GFF3272	0.58	-1.0
3,325,770	+		GFF3272	0.60	+1.7
3,325,808	+		GFF3272	0.63	-0.6
3,325,851	-		GFF3272	0.66	-1.6
3,325,873	-		GFF3272	0.68	+0.7
3,325,875	+		GFF3272	0.68	+1.1
3,325,875	+		GFF3272	0.68	-2.6
3,325,880	+		GFF3272	0.68	-1.4
3,325,928	+		GFF3272	0.72	-1.5
3,325,968	+		GFF3272	0.75	-1.7
3,325,968	+		GFF3272	0.75	+0.5
3,325,968	+		GFF3272	0.75	-1.3
3,325,968	+		GFF3272	0.75	-0.0
3,325,968	+		GFF3272	0.75	+0.7
3,325,968	+		GFF3272	0.75	-0.7
3,325,973	+		GFF3272	0.75	+1.1
3,325,976	-		GFF3272	0.76	-1.4
3,325,976	-		GFF3272	0.76	+0.7
3,326,014	-		GFF3272	0.79	-1.0
3,326,025	+		GFF3272	0.79	-0.7
3,326,033	-		GFF3272	0.80	+0.7
3,326,033	-		GFF3272	0.80	+0.6
3,326,033	-		GFF3272	0.80	-0.7
3,326,033	-		GFF3272	0.80	+0.5
3,326,047	+		GFF3272	0.81	-2.0
3,326,055	-		GFF3272	0.82	-1.7
3,326,064	+		GFF3272	0.82	-1.6
3,326,064	+		GFF3272	0.82	-0.8
3,326,064	+		GFF3272	0.82	-1.0
3,326,064	+		GFF3272	0.82	+0.1
3,326,069	+		GFF3272	0.83	-0.3
3,326,069	+		GFF3272	0.83	-0.1
3,326,069	+		GFF3272	0.83	+0.7
3,326,069	+		GFF3272	0.83	-0.1
3,326,069	+		GFF3272	0.83	+0.2
3,326,072	-		GFF3272	0.83	-0.8
3,326,072	-		GFF3272	0.83	+0.7
3,326,077	-		GFF3272	0.83	-1.6
3,326,077	-		GFF3272	0.83	-0.3
3,326,078	-		GFF3272	0.83	+1.3
3,326,086	+		GFF3272	0.84	+0.7
3,326,086	+		GFF3272	0.84	-0.4
3,326,086	+		GFF3272	0.84	+0.2
3,326,086	+		GFF3272	0.84	-0.5
3,326,094	-		GFF3272	0.85	+0.1
3,326,096	+		GFF3272	0.85	-2.3
3,326,096	+		GFF3272	0.85	+0.1
3,326,102	+		GFF3272	0.85	+0.4
3,326,102	+		GFF3272	0.85	-0.5
3,326,104	-		GFF3272	0.85	-0.4
3,326,104	-		GFF3272	0.85	-0.6
3,326,104	-		GFF3272	0.85	-0.4
3,326,104	-		GFF3272	0.85	-0.4
3,326,104	-		GFF3272	0.85	-2.4
3,326,104	-		GFF3272	0.85	+1.1
3,326,105	-		GFF3272	0.86	-1.9
3,326,131	-		GFF3272	0.87	-0.8
3,326,153	-		GFF3272	0.89	-1.3
3,326,169	+				+0.7
3,326,177	+				+0.1
3,326,177	+				+0.7
3,326,177	+				-1.7
3,326,177	+				-1.2
3,326,185	-				-2.2
3,326,185	-				-0.5
3,326,185	-				-1.3
3,326,192	+				+0.4
3,326,192	-				-1.9
3,326,205	-				-1.3
3,326,205	-				-1.5
3,326,210	+				-0.5
3,326,222	+				-1.0
3,326,232	+				+0.1
3,326,238	+				+0.5
3,326,243	+				+0.9
3,326,251	-				-2.3
3,326,251	-				-0.3
3,326,295	+				-0.7
3,326,295	+				-0.9
3,326,295	+				-0.7
3,326,302	+				-0.3
3,326,304	-				-0.3
3,326,310	+				+0.3
3,326,310	+				-0.3
3,326,310	+				+0.1
3,326,311	+				+0.5
3,326,311	-				+0.0
3,326,317	+				-0.3
3,326,318	-				+1.1
3,326,318	-				+0.7
3,326,325	-				+0.3
3,326,325	-				-0.3
3,326,338	+				-2.4
3,326,338	+				-0.2
3,326,344	+				-0.6
3,326,344	+				+0.6
3,326,346	-				-0.6
3,326,346	-				-0.7
3,326,346	-				-0.4
3,326,346	-				-0.7
3,326,352	-				+0.0
3,326,369	-				-2.0
3,326,373	+				-0.3
3,326,373	+				-0.8
3,326,381	-				+0.4
3,326,388	+				-0.1
3,326,388	+				+0.2
3,326,396	-		GFF3273	0.10	-0.4
3,326,397	-		GFF3273	0.10	-0.0
3,326,397	-		GFF3273	0.10	-0.0
3,326,397	-		GFF3273	0.10	-0.0
3,326,407	-		GFF3273	0.13	-0.7
3,326,421	+		GFF3273	0.15	-0.6
3,326,422	+		GFF3273	0.16	+1.2
3,326,444	+		GFF3273	0.20	-1.7
3,326,444	+		GFF3273	0.20	-1.8
3,326,452	-		GFF3273	0.22	-0.2
3,326,459	+		GFF3273	0.23	-2.8
3,326,472	-		GFF3273	0.26	+0.5
3,326,472	-		GFF3273	0.26	+0.8
3,326,472	-		GFF3273	0.26	-0.6
3,326,477	-		GFF3273	0.27	-0.4
3,326,477	-		GFF3273	0.27	-1.9
3,326,496	+		GFF3273	0.31	+0.0
3,326,496	+		GFF3273	0.31	-0.1
3,326,506	+		GFF3273	0.33	+1.2
3,326,512	+		GFF3273	0.34	-0.5
3,326,516	+		GFF3273	0.35	-0.8
3,326,518	-		GFF3273	0.35	+0.7
3,326,520	-		GFF3273	0.36	+0.2
3,326,547	+		GFF3273	0.41	+0.3
3,326,564	+		GFF3273	0.45	-1.7
3,326,570	+		GFF3273	0.46	+0.3
3,326,580	+		GFF3273	0.48	+0.1
3,326,580	+		GFF3273	0.48	-1.7
3,326,580	+		GFF3273	0.48	-0.3
3,326,583	-		GFF3273	0.49	+0.7
3,326,585	+		GFF3273	0.49	-2.4
3,326,590	+		GFF3273	0.50	+0.4
3,326,592	+		GFF3273	0.51	-0.5
3,326,592	+		GFF3273	0.51	-1.0
3,326,595	+		GFF3273	0.51	+1.3
3,326,598	-		GFF3273	0.52	+0.2
3,326,600	-		GFF3273	0.52	-0.0
3,326,600	-		GFF3273	0.52	+0.4
3,326,600	-		GFF3273	0.52	-0.9
3,326,600	-		GFF3273	0.52	-1.9
3,326,603	-		GFF3273	0.53	-1.4
3,326,610	+		GFF3273	0.54	-0.7
3,326,638	+		GFF3273	0.60	-0.5
3,326,652	+		GFF3273	0.63	+0.8
3,326,653	+		GFF3273	0.63	-0.3
3,326,653	+		GFF3273	0.63	-0.3
3,326,653	+		GFF3273	0.63	+0.5
3,326,653	+		GFF3273	0.63	+1.5
3,326,653	+		GFF3273	0.63	+0.1
3,326,661	-		GFF3273	0.65	+1.0
3,326,661	-		GFF3273	0.65	+1.8
3,326,661	-		GFF3273	0.65	+1.3
3,326,661	-		GFF3273	0.65	+1.0
3,326,661	-		GFF3273	0.65	+0.9
3,326,661	-		GFF3273	0.65	-1.7
3,326,701	-		GFF3273	0.73	-0.3
3,326,732	-		GFF3273	0.79	-0.6
3,326,735	-		GFF3273	0.80	+0.1
3,326,751	-		GFF3273	0.83	+0.5
3,326,751	-		GFF3273	0.83	-0.6
3,326,758	+		GFF3273	0.85	-0.5
3,326,758	+		GFF3273	0.85	-1.3
3,326,766	-		GFF3273	0.86	-0.9
3,326,766	-		GFF3273	0.86	-1.3
3,326,780	+		GFF3273	0.89	-0.0
3,326,841	+				-0.5
3,326,841	+				-1.2
3,326,859	-				+1.7
3,326,869	+				-1.9
3,326,874	+				+0.1
3,326,874	+				-2.0
3,326,884	+				-1.9
3,326,916	+				-1.0
3,327,559	-				-1.1
3,327,583	+				-0.2
3,327,583	+				+0.7
3,327,583	+				+0.3
3,327,583	+				-0.6
3,327,583	+				-0.5
3,327,588	+				+0.3
3,327,591	-				+0.4
3,327,596	-				-1.4
3,327,611	-				-3.5
3,327,617	-				-1.3
3,327,617	-				-0.4
3,327,617	-				-2.1
3,327,617	-				+0.5
3,327,630	+				-0.0
3,327,638	-				-0.3
3,327,640	+				-0.0
3,327,648	-				+0.0
3,327,648	-				+0.1
3,327,657	-				-1.4
3,327,667	+				+0.8
3,327,673	-				-1.5
3,327,675	-				-2.6
3,327,675	-				-0.8
3,327,731	+				+0.8
3,327,731	+				+1.3
3,327,731	+				-0.0
3,327,739	-				+0.4
3,327,749	-		GFF3275	0.11	-0.0
3,327,790	-		GFF3275	0.13	-0.1
3,327,792	+		GFF3275	0.13	+1.1
3,327,792	+		GFF3275	0.13	-0.6