Strain Fitness in Sphingobium sp. HT1-2 around GFF3216

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,271,817	-		GFF3214	0.48	-1.4
3,271,841	+		GFF3214	0.50	-0.0
3,271,849	-		GFF3214	0.50	-0.8
3,271,865	-		GFF3214	0.51	+1.1
3,271,877	+		GFF3214	0.52	+0.8
3,271,877	+		GFF3214	0.52	-0.1
3,271,885	-		GFF3214	0.53	-0.5
3,271,896	+		GFF3214	0.54	-0.8
3,271,901	+		GFF3214	0.54	+0.2
3,271,901	+		GFF3214	0.54	-1.6
3,271,901	+		GFF3214	0.54	-0.3
3,271,901	-		GFF3214	0.54	-0.8
3,271,906	+		GFF3214	0.55	+0.7
3,271,906	+		GFF3214	0.55	-0.6
3,271,909	-		GFF3214	0.55	-0.8
3,271,909	-		GFF3214	0.55	+0.3
3,271,909	-		GFF3214	0.55	+0.1
3,271,909	-		GFF3214	0.55	-2.5
3,271,909	-		GFF3214	0.55	-0.3
3,271,930	-		GFF3214	0.56	-0.7
3,271,930	-		GFF3214	0.56	-1.0
3,271,942	+		GFF3214	0.57	+0.1
3,271,950	-		GFF3214	0.58	-0.3
3,271,952	+		GFF3214	0.58	-0.5
3,271,952	+		GFF3214	0.58	+1.2
3,271,952	+		GFF3214	0.58	+1.3
3,271,952	+		GFF3214	0.58	-1.4
3,271,952	+		GFF3214	0.58	-0.0
3,271,959	+		GFF3214	0.59	-1.7
3,271,960	-		GFF3214	0.59	+0.0
3,271,960	-		GFF3214	0.59	-0.6
3,271,960	-		GFF3214	0.59	-1.9
3,271,967	-		GFF3214	0.59	-0.4
3,271,967	-		GFF3214	0.59	-0.9
3,271,967	-		GFF3214	0.59	-0.6
3,271,969	+		GFF3214	0.59	-0.3
3,271,969	+		GFF3214	0.59	-0.2
3,271,977	-		GFF3214	0.60	+1.1
3,271,977	-		GFF3214	0.60	-0.3
3,271,977	-		GFF3214	0.60	-0.5
3,271,997	-		GFF3214	0.62	+0.1
3,271,999	+		GFF3214	0.62	+0.3
3,271,999	+		GFF3214	0.62	+0.3
3,272,000	+		GFF3214	0.62	-0.0
3,272,000	+		GFF3214	0.62	+0.2
3,272,005	+		GFF3214	0.62	+0.4
3,272,034	+		GFF3214	0.64	-1.6
3,272,039	+		GFF3214	0.65	-1.9
3,272,039	+		GFF3214	0.65	+0.4
3,272,042	-		GFF3214	0.65	-0.6
3,272,071	+		GFF3214	0.67	-0.5
3,272,093	+		GFF3214	0.69	+0.1
3,272,095	+		GFF3214	0.69	+1.0
3,272,101	-		GFF3214	0.70	+0.1
3,272,112	+		GFF3214	0.71	-0.1
3,272,120	-		GFF3214	0.71	-0.9
3,272,139	-		GFF3214	0.73	-0.2
3,272,179	-		GFF3214	0.76	-0.3
3,272,180	-		GFF3214	0.76	-0.8
3,272,203	+		GFF3214	0.78	+0.6
3,272,209	+		GFF3214	0.78	-0.7
3,272,209	+		GFF3214	0.78	+0.8
3,272,209	+		GFF3214	0.78	+1.6
3,272,211	-		GFF3214	0.78	-0.1
3,272,217	-		GFF3214	0.79	+0.4
3,272,217	-		GFF3214	0.79	+0.6
3,272,217	-		GFF3214	0.79	+0.2
3,272,217	-		GFF3214	0.79	+0.5
3,272,249	+		GFF3214	0.81	+0.1
3,272,249	+		GFF3214	0.81	-0.5
3,272,300	-		GFF3214	0.85	-0.2
3,272,300	-		GFF3214	0.85	-1.2
3,272,304	-		GFF3214	0.85	-0.9
3,272,307	+		GFF3214	0.86	-0.9
3,272,312	+		GFF3214	0.86	-1.5
3,272,318	+		GFF3214	0.87	+0.8
3,272,339	-		GFF3214	0.88	-1.8
3,272,339	-		GFF3214	0.88	-0.2
3,272,370	+				-0.4
3,272,378	-				+0.2
3,272,378	-				+1.2
3,272,397	+				+0.4
3,272,397	+				+0.0
3,272,399	-				-0.4
3,272,399	-				-0.9
3,272,399	-				-2.1
3,272,410	+				+1.1
3,272,421	+				-1.1
3,272,431	+				+0.6
3,272,439	-				-0.9
3,272,455	+				+1.1
3,272,486	-				+0.0
3,272,498	-				-1.6
3,272,757	+				+0.4
3,272,797	-				-1.4
3,272,801	+				+0.7
3,272,805	+				-0.4
3,272,813	-				+0.2
3,272,814	+				+0.1
3,272,814	+				+1.6
3,272,837	+				+0.2
3,272,863	+		GFF3216	0.14	-0.6
3,272,905	+		GFF3216	0.21	-0.3
3,272,905	+		GFF3216	0.21	+0.9
3,272,913	-		GFF3216	0.23	+0.2
3,272,913	-		GFF3216	0.23	-0.2
3,272,915	-		GFF3216	0.23	-1.2
3,272,988	-		GFF3216	0.35	+0.0
3,272,993	-		GFF3216	0.36	+0.3
3,273,019	-		GFF3216	0.41	+0.2
3,273,024	-		GFF3216	0.41	+0.6
3,273,040	+		GFF3216	0.44	+0.2
3,273,040	+		GFF3216	0.44	-0.3
3,273,040	+		GFF3216	0.44	-1.3
3,273,041	+		GFF3216	0.44	+0.6
3,273,041	+		GFF3216	0.44	+0.2
3,273,049	-		GFF3216	0.46	+0.1
3,273,049	-		GFF3216	0.46	+0.6
3,273,051	+		GFF3216	0.46	+1.3
3,273,051	+		GFF3216	0.46	-1.5
3,273,059	-		GFF3216	0.47	+0.7
3,273,059	-		GFF3216	0.47	+0.4
3,273,098	+		GFF3216	0.54	-0.0
3,273,101	-		GFF3216	0.55	+0.8
3,273,111	-		GFF3216	0.56	+1.1
3,273,117	+		GFF3216	0.57	+0.3
3,273,117	+		GFF3216	0.57	+0.3
3,273,122	+		GFF3216	0.58	-0.4
3,273,126	+		GFF3216	0.59	+0.4
3,273,131	+		GFF3216	0.60	-1.1
3,273,134	+		GFF3216	0.60	-1.9
3,273,136	+		GFF3216	0.61	+0.9
3,273,162	-		GFF3216	0.65	+0.1
3,273,201	+		GFF3216	0.72	+1.1
3,273,206	+		GFF3216	0.72	+2.9
3,273,206	+		GFF3216	0.72	+0.5
3,273,206	+		GFF3216	0.72	+0.1
3,273,206	+		GFF3216	0.72	+0.2
3,273,209	-		GFF3216	0.73	-0.3
3,273,211	+		GFF3216	0.73	-0.7
3,273,211	+		GFF3216	0.73	-1.6
3,273,211	+		GFF3216	0.73	-1.2
3,273,211	+		GFF3216	0.73	+1.1
3,273,214	-		GFF3216	0.74	+0.5
3,273,214	-		GFF3216	0.74	-0.0
3,273,214	-		GFF3216	0.74	-1.2
3,273,214	-		GFF3216	0.74	+0.8
3,273,214	-		GFF3216	0.74	+1.2
3,273,219	-		GFF3216	0.75	+0.1
3,273,219	-		GFF3216	0.75	+0.6
3,273,233	+		GFF3216	0.77	+0.1
3,273,233	+		GFF3216	0.77	+0.4
3,273,233	+		GFF3216	0.77	+0.3
3,273,233	+		GFF3216	0.77	-1.9
3,273,233	+		GFF3216	0.77	-0.7
3,273,233	+		GFF3216	0.77	+0.8
3,273,233	+		GFF3216	0.77	+0.8
3,273,233	+		GFF3216	0.77	+1.8
3,273,233	+		GFF3216	0.77	-1.1
3,273,233	+		GFF3216	0.77	-1.9
3,273,233	+		GFF3216	0.77	-0.1
3,273,233	+		GFF3216	0.77	-2.1
3,273,233	+		GFF3216	0.77	+0.2
3,273,233	+		GFF3216	0.77	-1.9
3,273,241	-		GFF3216	0.78	-0.2
3,273,241	-		GFF3216	0.78	+0.1
3,273,241	-		GFF3216	0.78	+0.4
3,273,241	-		GFF3216	0.78	+0.8
3,273,241	-		GFF3216	0.78	+0.0
3,273,241	-		GFF3216	0.78	-1.1
3,273,241	-		GFF3216	0.78	+0.1
3,273,241	-		GFF3216	0.78	-0.4
3,273,241	-		GFF3216	0.78	-0.4
3,273,241	-		GFF3216	0.78	-2.1
3,273,241	-		GFF3216	0.78	+0.6
3,273,241	-		GFF3216	0.78	+0.8
3,273,246	+		GFF3216	0.79	+0.9
3,273,256	+		GFF3216	0.81	-1.7
3,273,256	+		GFF3216	0.81	-2.9
3,273,256	+		GFF3216	0.81	+0.3
3,273,266	+		GFF3216	0.83	+0.5
3,273,266	+		GFF3216	0.83	-0.4
3,273,266	+		GFF3216	0.83	+0.5
3,273,272	-		GFF3216	0.84	-0.4
3,273,276	+		GFF3216	0.84	+0.8
3,273,276	+		GFF3216	0.84	-0.2
3,273,284	-		GFF3216	0.86	-0.4
3,273,284	-		GFF3216	0.86	-0.0
3,273,322	+				+0.7
3,273,322	+				-0.7
3,273,322	+				+0.9
3,273,322	+				+0.1
3,273,322	+				-0.1
3,273,330	-				+1.6
3,273,330	-				-1.9
3,273,330	-				+1.3
3,273,330	-				-2.7
3,273,330	-				-0.6
3,273,330	-				+0.4
3,273,330	-				-0.1
3,273,334	+				-1.8
3,273,339	+				+0.5
3,273,341	+				-0.4
3,273,341	+				-1.2
3,273,341	+				+0.2
3,273,342	-				-0.1
3,273,347	-				+0.1
3,273,347	-				-0.3
3,273,349	-				-1.9
3,273,349	-				-1.1
3,273,349	-				-0.4
3,273,380	-				-1.4
3,273,399	+				-1.5
3,273,410	-				-0.2
3,273,447	+				+1.2
3,273,447	+				-0.6
3,273,457	+				-1.2
3,273,457	+				-2.0
3,273,514	+				-1.4
3,273,537	+		GFF3217	0.12	-0.2
3,273,537	+		GFF3217	0.12	-1.2
3,273,545	-		GFF3217	0.13	-2.1
3,273,545	-		GFF3217	0.13	-2.0
3,273,555	-		GFF3217	0.14	-0.4
3,273,559	-		GFF3217	0.14	+0.8
3,273,567	-		GFF3217	0.15	-0.2
3,273,588	+		GFF3217	0.17	-0.2
3,273,604	+		GFF3217	0.19	-0.4
3,273,612	-		GFF3217	0.20	+0.6
3,273,659	+		GFF3217	0.24	-0.7
3,273,721	-		GFF3217	0.31	-0.3
3,273,733	+		GFF3217	0.32	-0.7
3,273,733	+		GFF3217	0.32	-1.6
3,273,736	-		GFF3217	0.32	-1.7
3,273,741	-		GFF3217	0.33	+1.8
3,273,741	-		GFF3217	0.33	-1.2
3,273,741	-		GFF3217	0.33	+0.6
3,273,741	-		GFF3217	0.33	+0.2
3,273,797	+		GFF3217	0.38	+0.4
3,273,813	+		GFF3217	0.40	-2.2
3,273,818	+		GFF3217	0.41	+0.7
3,273,831	+		GFF3217	0.42	+1.1
3,273,895	-		GFF3217	0.48	-1.2
3,273,906	+		GFF3217	0.49	-0.6
3,273,906	+		GFF3217	0.49	+0.1
3,273,913	-		GFF3217	0.50	-1.9
3,273,965	-		GFF3217	0.55	-2.2
3,273,970	-		GFF3217	0.56	-0.8
3,274,019	-		GFF3217	0.61	-0.4
3,274,020	+		GFF3217	0.61	+0.5
3,274,030	+		GFF3217	0.62	+0.7
3,274,038	-		GFF3217	0.63	+0.5
3,274,052	+		GFF3217	0.64	-0.2
3,274,067	+		GFF3217	0.66	-0.5
3,274,122	+		GFF3217	0.71	-1.4
3,274,198	+		GFF3217	0.79	-1.2
3,274,271	-		GFF3217	0.86	+0.8
3,274,322	-				-0.3