Strain Fitness in Sphingobium sp. HT1-2 around GFF308

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF307 and GFF308 are separated by 33 nucleotidesGFF308 and GFF309 overlap by 4 nucleotidesGFF309 and GFF310 are separated by 11 nucleotides GFF307 - Glutathione synthetase (EC 6.3.2.3), at 303,096 to 304,070 GFF307 GFF308 - UPF0102 protein YraN, at 304,104 to 304,457 GFF308 GFF309 - '16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198)' transl_table=11, at 304,454 to 305,311 GFF309 GFF310 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 305,323 to 306,528 GFF310 Position (kb) 304 305Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 304.074 kb on - strandat 304.076 kb on + strandat 304.099 kb on + strandat 304.099 kb on + strandat 304.099 kb on + strandat 304.099 kb on + strandat 304.099 kb on + strandat 304.099 kb on + strandat 304.099 kb on + strandat 304.099 kb on + strandat 304.101 kb on + strandat 304.102 kb on - strandat 304.107 kb on - strandat 304.107 kb on - strandat 304.120 kb on + strandat 304.151 kb on + strand, within GFF308at 304.154 kb on - strand, within GFF308at 304.166 kb on + strand, within GFF308at 304.182 kb on + strand, within GFF308at 304.182 kb on + strand, within GFF308at 304.192 kb on + strand, within GFF308at 304.197 kb on - strand, within GFF308at 304.197 kb on - strand, within GFF308at 304.225 kb on + strand, within GFF308at 304.239 kb on - strand, within GFF308at 304.239 kb on - strand, within GFF308at 304.271 kb on - strand, within GFF308at 304.271 kb on - strand, within GFF308at 304.271 kb on - strand, within GFF308at 304.271 kb on - strand, within GFF308at 304.280 kb on + strand, within GFF308at 304.287 kb on + strand, within GFF308at 304.287 kb on + strand, within GFF308at 304.295 kb on - strand, within GFF308at 304.295 kb on - strand, within GFF308at 304.295 kb on - strand, within GFF308at 304.300 kb on + strand, within GFF308at 304.305 kb on + strand, within GFF308at 304.305 kb on + strand, within GFF308at 304.305 kb on + strand, within GFF308at 304.305 kb on + strand, within GFF308at 304.306 kb on - strand, within GFF308at 304.313 kb on - strand, within GFF308at 304.313 kb on - strand, within GFF308at 304.313 kb on - strand, within GFF308at 304.313 kb on - strand, within GFF308at 304.315 kb on + strand, within GFF308at 304.334 kb on + strand, within GFF308at 304.334 kb on + strand, within GFF308at 304.336 kb on - strand, within GFF308at 304.351 kb on + strand, within GFF308at 304.359 kb on - strand, within GFF308at 304.359 kb on - strand, within GFF308at 304.375 kb on - strand, within GFF308at 304.384 kb on + strand, within GFF308at 304.392 kb on - strand, within GFF308at 304.405 kb on - strand, within GFF308at 304.453 kb on - strandat 304.470 kb on + strandat 304.470 kb on + strandat 304.470 kb on + strandat 304.470 kb on + strandat 304.470 kb on + strandat 304.475 kb on - strandat 304.478 kb on - strandat 304.478 kb on - strandat 304.478 kb on - strandat 304.478 kb on - strandat 304.478 kb on - strandat 304.478 kb on - strandat 304.490 kb on + strandat 304.490 kb on + strandat 304.490 kb on + strandat 304.490 kb on + strandat 304.490 kb on + strandat 304.490 kb on + strandat 304.490 kb on + strandat 304.490 kb on + strandat 304.490 kb on + strandat 304.490 kb on + strandat 304.490 kb on + strandat 304.496 kb on - strandat 304.498 kb on - strandat 304.498 kb on - strandat 304.498 kb on - strandat 304.498 kb on - strandat 304.498 kb on - strandat 304.498 kb on - strandat 304.498 kb on - strandat 304.498 kb on - strandat 304.498 kb on - strandat 304.498 kb on - strandat 304.512 kb on + strandat 304.515 kb on - strandat 304.516 kb on - strandat 304.520 kb on - strandat 304.520 kb on - strandat 304.551 kb on + strand, within GFF309at 304.562 kb on + strand, within GFF309at 304.562 kb on + strand, within GFF309at 304.562 kb on + strand, within GFF309at 304.562 kb on + strand, within GFF309at 304.565 kb on - strand, within GFF309at 304.569 kb on + strand, within GFF309at 304.569 kb on + strand, within GFF309at 304.570 kb on - strand, within GFF309at 304.575 kb on - strand, within GFF309at 304.577 kb on - strand, within GFF309at 304.594 kb on + strand, within GFF309at 304.594 kb on + strand, within GFF309at 304.602 kb on - strand, within GFF309at 304.604 kb on + strand, within GFF309at 304.604 kb on + strand, within GFF309at 304.604 kb on + strand, within GFF309at 304.604 kb on + strand, within GFF309at 304.604 kb on + strand, within GFF309at 304.604 kb on + strand, within GFF309at 304.604 kb on + strand, within GFF309at 304.604 kb on + strand, within GFF309at 304.604 kb on + strand, within GFF309at 304.604 kb on + strand, within GFF309at 304.612 kb on - strand, within GFF309at 304.612 kb on - strand, within GFF309at 304.612 kb on - strand, within GFF309at 304.650 kb on + strand, within GFF309at 304.711 kb on + strand, within GFF309at 304.719 kb on - strand, within GFF309at 304.726 kb on - strand, within GFF309at 304.729 kb on + strand, within GFF309at 304.729 kb on + strand, within GFF309at 304.737 kb on - strand, within GFF309at 304.737 kb on - strand, within GFF309at 304.737 kb on - strand, within GFF309at 304.757 kb on + strand, within GFF309at 304.762 kb on + strand, within GFF309at 304.765 kb on - strand, within GFF309at 304.765 kb on - strand, within GFF309at 304.777 kb on + strand, within GFF309at 304.777 kb on + strand, within GFF309at 304.777 kb on + strand, within GFF309at 304.777 kb on + strand, within GFF309at 304.785 kb on + strand, within GFF309at 304.785 kb on - strand, within GFF309at 304.793 kb on - strand, within GFF309at 304.795 kb on + strand, within GFF309at 304.817 kb on + strand, within GFF309at 304.817 kb on + strand, within GFF309at 304.817 kb on + strand, within GFF309at 304.817 kb on + strand, within GFF309at 304.825 kb on - strand, within GFF309at 304.825 kb on - strand, within GFF309at 304.825 kb on - strand, within GFF309at 304.825 kb on - strand, within GFF309at 304.825 kb on - strand, within GFF309at 304.832 kb on - strand, within GFF309at 304.834 kb on + strand, within GFF309at 304.850 kb on - strand, within GFF309at 304.867 kb on + strand, within GFF309at 304.875 kb on + strand, within GFF309at 304.875 kb on - strand, within GFF309at 304.875 kb on - strand, within GFF309at 304.889 kb on + strand, within GFF309at 304.890 kb on + strand, within GFF309at 304.890 kb on + strand, within GFF309at 304.900 kb on - strand, within GFF309at 304.904 kb on - strand, within GFF309at 304.918 kb on + strand, within GFF309at 304.921 kb on - strand, within GFF309at 304.926 kb on - strand, within GFF309at 304.926 kb on - strand, within GFF309at 304.928 kb on + strand, within GFF309at 304.928 kb on + strand, within GFF309at 304.931 kb on - strand, within GFF309at 304.954 kb on + strand, within GFF309at 304.965 kb on + strand, within GFF309at 304.965 kb on + strand, within GFF309at 304.966 kb on - strand, within GFF309at 304.972 kb on - strand, within GFF309at 304.973 kb on - strand, within GFF309at 304.973 kb on - strand, within GFF309at 304.995 kb on - strand, within GFF309at 305.017 kb on + strand, within GFF309at 305.043 kb on + strand, within GFF309at 305.043 kb on + strand, within GFF309at 305.043 kb on + strand, within GFF309at 305.043 kb on + strand, within GFF309at 305.084 kb on - strand, within GFF309at 305.111 kb on + strand, within GFF309at 305.121 kb on - strand, within GFF309at 305.138 kb on + strand, within GFF309at 305.138 kb on + strand, within GFF309at 305.138 kb on + strand, within GFF309at 305.143 kb on + strand, within GFF309at 305.146 kb on - strand, within GFF309at 305.153 kb on + strand, within GFF309at 305.161 kb on + strand, within GFF309at 305.161 kb on + strand, within GFF309at 305.161 kb on + strand, within GFF309at 305.161 kb on - strand, within GFF309at 305.166 kb on + strand, within GFF309at 305.166 kb on + strand, within GFF309at 305.169 kb on - strand, within GFF309at 305.169 kb on - strand, within GFF309at 305.169 kb on - strand, within GFF309at 305.169 kb on - strand, within GFF309at 305.169 kb on - strand, within GFF309at 305.169 kb on - strand, within GFF309at 305.169 kb on - strand, within GFF309at 305.169 kb on - strand, within GFF309at 305.169 kb on - strand, within GFF309at 305.174 kb on - strand, within GFF309at 305.174 kb on - strand, within GFF309at 305.174 kb on - strand, within GFF309at 305.207 kb on + strand, within GFF309at 305.207 kb on + strand, within GFF309at 305.213 kb on + strand, within GFF309at 305.230 kb on + strandat 305.238 kb on - strandat 305.239 kb on + strandat 305.247 kb on - strandat 305.254 kb on - strandat 305.276 kb on + strandat 305.294 kb on + strandat 305.347 kb on - strandat 305.358 kb on + strandat 305.373 kb on - strandat 305.383 kb on + strandat 305.443 kb on + strandat 305.452 kb on - strand, within GFF310

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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304,074 - -1.0
304,076 + -0.2
304,099 + -0.4
304,099 + -2.4
304,099 + -0.6
304,099 + -1.3
304,099 + -1.6
304,099 + -1.0
304,099 + -0.2
304,099 + -0.2
304,101 + +0.5
304,102 - +0.5
304,107 - +0.1
304,107 - +0.3
304,120 + -1.4
304,151 + GFF308 0.13 -1.6
304,154 - GFF308 0.14 -0.8
304,166 + GFF308 0.18 -1.1
304,182 + GFF308 0.22 +0.0
304,182 + GFF308 0.22 -0.5
304,192 + GFF308 0.25 +0.5
304,197 - GFF308 0.26 +0.5
304,197 - GFF308 0.26 +1.1
304,225 + GFF308 0.34 -0.1
304,239 - GFF308 0.38 +0.2
304,239 - GFF308 0.38 -0.4
304,271 - GFF308 0.47 -0.2
304,271 - GFF308 0.47 +1.0
304,271 - GFF308 0.47 -0.4
304,271 - GFF308 0.47 -1.6
304,280 + GFF308 0.50 -0.6
304,287 + GFF308 0.52 +1.0
304,287 + GFF308 0.52 +0.0
304,295 - GFF308 0.54 +0.8
304,295 - GFF308 0.54 -1.2
304,295 - GFF308 0.54 +0.3
304,300 + GFF308 0.55 +0.6
304,305 + GFF308 0.57 -0.8
304,305 + GFF308 0.57 -0.9
304,305 + GFF308 0.57 +0.1
304,305 + GFF308 0.57 -0.1
304,306 - GFF308 0.57 -1.5
304,313 - GFF308 0.59 +1.0
304,313 - GFF308 0.59 -0.4
304,313 - GFF308 0.59 -1.1
304,313 - GFF308 0.59 +0.3
304,315 + GFF308 0.60 +0.3
304,334 + GFF308 0.65 +0.3
304,334 + GFF308 0.65 +0.8
304,336 - GFF308 0.66 +0.6
304,351 + GFF308 0.70 -0.3
304,359 - GFF308 0.72 -0.1
304,359 - GFF308 0.72 +0.3
304,375 - GFF308 0.77 -0.7
304,384 + GFF308 0.79 -2.2
304,392 - GFF308 0.81 -1.2
304,405 - GFF308 0.85 -1.0
304,453 - -1.1
304,470 + -1.5
304,470 + +1.3
304,470 + -0.3
304,470 + +0.9
304,470 + -0.2
304,475 - +0.9
304,478 - -0.4
304,478 - -1.7
304,478 - -0.4
304,478 - -0.9
304,478 - +0.4
304,478 - -1.1
304,490 + -0.4
304,490 + +0.7
304,490 + -1.3
304,490 + -0.8
304,490 + -0.6
304,490 + +0.9
304,490 + +0.3
304,490 + +1.6
304,490 + -2.0
304,490 + -0.9
304,490 + +0.4
304,496 - +0.8
304,498 - -2.1
304,498 - -0.6
304,498 - +0.3
304,498 - -0.1
304,498 - -0.6
304,498 - -2.1
304,498 - -2.3
304,498 - -1.7
304,498 - +0.6
304,498 - -0.2
304,512 + -0.2
304,515 - -2.0
304,516 - -0.4
304,520 - +0.7
304,520 - -0.9
304,551 + GFF309 0.11 -1.5
304,562 + GFF309 0.13 +0.9
304,562 + GFF309 0.13 -0.2
304,562 + GFF309 0.13 -0.2
304,562 + GFF309 0.13 -2.4
304,565 - GFF309 0.13 -0.2
304,569 + GFF309 0.13 -1.4
304,569 + GFF309 0.13 -0.4
304,570 - GFF309 0.14 -1.9
304,575 - GFF309 0.14 -2.0
304,577 - GFF309 0.14 +1.2
304,594 + GFF309 0.16 -1.3
304,594 + GFF309 0.16 -1.0
304,602 - GFF309 0.17 -0.7
304,604 + GFF309 0.17 +0.5
304,604 + GFF309 0.17 +0.8
304,604 + GFF309 0.17 -0.8
304,604 + GFF309 0.17 -0.2
304,604 + GFF309 0.17 +0.4
304,604 + GFF309 0.17 -1.4
304,604 + GFF309 0.17 -0.3
304,604 + GFF309 0.17 -1.1
304,604 + GFF309 0.17 +1.7
304,604 + GFF309 0.17 +0.1
304,612 - GFF309 0.18 -0.1
304,612 - GFF309 0.18 -0.2
304,612 - GFF309 0.18 -2.1
304,650 + GFF309 0.23 -0.2
304,711 + GFF309 0.30 +0.6
304,719 - GFF309 0.31 -1.3
304,726 - GFF309 0.32 -1.2
304,729 + GFF309 0.32 -0.8
304,729 + GFF309 0.32 -0.4
304,737 - GFF309 0.33 +0.4
304,737 - GFF309 0.33 -0.3
304,737 - GFF309 0.33 -0.5
304,757 + GFF309 0.35 -1.2
304,762 + GFF309 0.36 -1.2
304,765 - GFF309 0.36 -1.9
304,765 - GFF309 0.36 -0.1
304,777 + GFF309 0.38 +0.4
304,777 + GFF309 0.38 -0.4
304,777 + GFF309 0.38 -1.8
304,777 + GFF309 0.38 -2.1
304,785 + GFF309 0.39 -0.6
304,785 - GFF309 0.39 -0.1
304,793 - GFF309 0.40 +0.3
304,795 + GFF309 0.40 -2.0
304,817 + GFF309 0.42 -1.3
304,817 + GFF309 0.42 +2.1
304,817 + GFF309 0.42 -0.7
304,817 + GFF309 0.42 -0.2
304,825 - GFF309 0.43 -0.0
304,825 - GFF309 0.43 -0.1
304,825 - GFF309 0.43 -1.5
304,825 - GFF309 0.43 -0.4
304,825 - GFF309 0.43 -1.9
304,832 - GFF309 0.44 -1.0
304,834 + GFF309 0.44 -0.1
304,850 - GFF309 0.46 +1.7
304,867 + GFF309 0.48 -1.9
304,875 + GFF309 0.49 -1.4
304,875 - GFF309 0.49 -0.8
304,875 - GFF309 0.49 -2.8
304,889 + GFF309 0.51 -0.6
304,890 + GFF309 0.51 -2.0
304,890 + GFF309 0.51 +0.5
304,900 - GFF309 0.52 -1.0
304,904 - GFF309 0.52 -1.5
304,918 + GFF309 0.54 +0.8
304,921 - GFF309 0.54 -0.3
304,926 - GFF309 0.55 -0.6
304,926 - GFF309 0.55 -1.2
304,928 + GFF309 0.55 +0.2
304,928 + GFF309 0.55 +0.5
304,931 - GFF309 0.56 +0.1
304,954 + GFF309 0.58 -0.2
304,965 + GFF309 0.60 -0.5
304,965 + GFF309 0.60 -0.4
304,966 - GFF309 0.60 -1.9
304,972 - GFF309 0.60 -0.9
304,973 - GFF309 0.60 -0.2
304,973 - GFF309 0.60 +0.1
304,995 - GFF309 0.63 -1.2
305,017 + GFF309 0.66 +0.3
305,043 + GFF309 0.69 -0.0
305,043 + GFF309 0.69 -0.1
305,043 + GFF309 0.69 -2.2
305,043 + GFF309 0.69 -1.2
305,084 - GFF309 0.73 +1.5
305,111 + GFF309 0.77 -1.1
305,121 - GFF309 0.78 -1.4
305,138 + GFF309 0.80 -0.9
305,138 + GFF309 0.80 -0.6
305,138 + GFF309 0.80 -2.2
305,143 + GFF309 0.80 -0.9
305,146 - GFF309 0.81 -1.1
305,153 + GFF309 0.81 +0.1
305,161 + GFF309 0.82 -0.8
305,161 + GFF309 0.82 +0.8
305,161 + GFF309 0.82 +0.3
305,161 - GFF309 0.82 -0.5
305,166 + GFF309 0.83 -0.7
305,166 + GFF309 0.83 +0.0
305,169 - GFF309 0.83 -1.2
305,169 - GFF309 0.83 -0.6
305,169 - GFF309 0.83 +0.6
305,169 - GFF309 0.83 -0.4
305,169 - GFF309 0.83 +0.1
305,169 - GFF309 0.83 -2.0
305,169 - GFF309 0.83 -0.6
305,169 - GFF309 0.83 +0.1
305,169 - GFF309 0.83 -0.6
305,174 - GFF309 0.84 -0.4
305,174 - GFF309 0.84 -1.2
305,174 - GFF309 0.84 -0.2
305,207 + GFF309 0.88 -1.8
305,207 + GFF309 0.88 +0.7
305,213 + GFF309 0.88 -1.7
305,230 + +1.0
305,238 - -1.5
305,239 + -1.4
305,247 - +0.7
305,254 - +0.0
305,276 + -0.8
305,294 + +0.5
305,347 - -1.1
305,358 + +1.0
305,373 - -0.1
305,383 + +0.1
305,443 + -0.3
305,452 - GFF310 0.11 -1.2

Or see this region's nucleotide sequence