Strain Fitness in Sphingobium sp. HT1-2 around GFF3079

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,146,891	+				-1.7
3,146,891	-				-0.3
3,146,891	-				+0.8
3,146,903	+				-1.3
3,146,908	+				+0.3
3,146,908	+				+0.2
3,146,908	+				+0.4
3,146,908	+				-0.4
3,146,908	+				-0.0
3,146,908	+				-0.5
3,146,908	+				+0.5
3,146,911	-				-0.3
3,146,916	-				-0.7
3,146,916	-				+0.9
3,146,916	-				-0.3
3,146,916	-				-2.0
3,146,932	-		GFF3078	0.10	+0.0
3,146,951	-		GFF3078	0.12	-2.1
3,146,956	-		GFF3078	0.13	-1.0
3,146,984	+		GFF3078	0.15	+0.2
3,146,984	+		GFF3078	0.15	+0.8
3,146,984	+		GFF3078	0.15	-1.9
3,146,992	-		GFF3078	0.16	+0.0
3,146,992	-		GFF3078	0.16	-1.2
3,146,992	-		GFF3078	0.16	-0.0
3,146,992	-		GFF3078	0.16	+1.3
3,146,992	-		GFF3078	0.16	-0.9
3,147,001	+		GFF3078	0.17	-0.1
3,147,001	+		GFF3078	0.17	+0.8
3,147,009	-		GFF3078	0.18	-1.8
3,147,016	+		GFF3078	0.19	-0.4
3,147,017	+		GFF3078	0.19	-1.0
3,147,034	+		GFF3078	0.20	+1.0
3,147,042	-		GFF3078	0.21	-0.7
3,147,049	+		GFF3078	0.22	-0.7
3,147,049	+		GFF3078	0.22	+0.1
3,147,053	+		GFF3078	0.22	-0.2
3,147,068	+		GFF3078	0.24	-0.2
3,147,074	+		GFF3078	0.24	+1.2
3,147,074	+		GFF3078	0.24	-0.5
3,147,074	+		GFF3078	0.24	+0.3
3,147,074	+		GFF3078	0.24	+0.7
3,147,074	+		GFF3078	0.24	-0.7
3,147,074	+		GFF3078	0.24	-1.6
3,147,074	+		GFF3078	0.24	-0.2
3,147,074	+		GFF3078	0.24	+0.7
3,147,077	-		GFF3078	0.25	-1.7
3,147,082	-		GFF3078	0.25	+1.9
3,147,082	-		GFF3078	0.25	+0.4
3,147,082	-		GFF3078	0.25	-0.9
3,147,082	-		GFF3078	0.25	-0.7
3,147,082	-		GFF3078	0.25	+0.6
3,147,082	-		GFF3078	0.25	-1.2
3,147,082	-		GFF3078	0.25	-0.9
3,147,082	-		GFF3078	0.25	-0.8
3,147,118	+		GFF3078	0.29	+1.4
3,147,118	+		GFF3078	0.29	+0.3
3,147,126	-		GFF3078	0.29	+0.9
3,147,145	+		GFF3078	0.31	+0.5
3,147,147	+		GFF3078	0.31	-0.3
3,147,153	-		GFF3078	0.32	-1.7
3,147,155	+		GFF3078	0.32	+1.1
3,147,155	-		GFF3078	0.32	-0.2
3,147,158	-		GFF3078	0.33	-0.9
3,147,178	+		GFF3078	0.35	-0.3
3,147,178	+		GFF3078	0.35	-0.6
3,147,178	+		GFF3078	0.35	-0.4
3,147,178	+		GFF3078	0.35	+0.6
3,147,186	-		GFF3078	0.35	-1.7
3,147,186	-		GFF3078	0.35	-0.6
3,147,186	-		GFF3078	0.35	-1.3
3,147,186	-		GFF3078	0.35	+0.8
3,147,186	-		GFF3078	0.35	-0.9
3,147,188	+		GFF3078	0.35	-0.4
3,147,202	-		GFF3078	0.37	+0.4
3,147,204	+		GFF3078	0.37	+1.0
3,147,212	-		GFF3078	0.38	+0.8
3,147,212	-		GFF3078	0.38	-0.9
3,147,229	+		GFF3078	0.40	+1.0
3,147,229	+		GFF3078	0.40	+1.1
3,147,229	+		GFF3078	0.40	-0.8
3,147,229	+		GFF3078	0.40	-0.2
3,147,229	+		GFF3078	0.40	-0.3
3,147,229	+		GFF3078	0.40	-1.1
3,147,234	+		GFF3078	0.40	+0.0
3,147,234	+		GFF3078	0.40	-0.5
3,147,234	+		GFF3078	0.40	-1.9
3,147,234	+		GFF3078	0.40	-0.0
3,147,234	+		GFF3078	0.40	-0.4
3,147,237	-		GFF3078	0.40	-0.7
3,147,237	-		GFF3078	0.40	+0.1
3,147,237	-		GFF3078	0.40	+1.0
3,147,237	-		GFF3078	0.40	-0.1
3,147,237	-		GFF3078	0.40	+0.3
3,147,237	-		GFF3078	0.40	-0.0
3,147,239	+		GFF3078	0.40	-1.7
3,147,242	-		GFF3078	0.41	-0.2
3,147,242	-		GFF3078	0.41	+0.5
3,147,242	-		GFF3078	0.41	-0.3
3,147,242	-		GFF3078	0.41	-1.1
3,147,242	-		GFF3078	0.41	-0.6
3,147,242	-		GFF3078	0.41	+0.0
3,147,244	+		GFF3078	0.41	+1.3
3,147,309	-		GFF3078	0.47	-0.6
3,147,315	+		GFF3078	0.48	-1.7
3,147,320	+		GFF3078	0.48	-0.4
3,147,323	-		GFF3078	0.49	-0.9
3,147,323	-		GFF3078	0.49	-2.2
3,147,330	+		GFF3078	0.49	+0.3
3,147,364	+		GFF3078	0.53	-1.9
3,147,364	+		GFF3078	0.53	-0.4
3,147,368	-		GFF3078	0.53	+0.8
3,147,392	+		GFF3078	0.55	-2.0
3,147,394	+		GFF3078	0.56	+0.7
3,147,402	-		GFF3078	0.56	+0.0
3,147,428	-		GFF3078	0.59	+1.0
3,147,433	+		GFF3078	0.60	-1.1
3,147,433	+		GFF3078	0.60	-0.6
3,147,454	-		GFF3078	0.62	-1.7
3,147,474	+		GFF3078	0.64	+1.2
3,147,477	-		GFF3078	0.64	+0.5
3,147,483	+		GFF3078	0.64	-0.6
3,147,502	+		GFF3078	0.66	-0.1
3,147,510	-		GFF3078	0.67	-1.8
3,147,513	-		GFF3078	0.67	+1.4
3,147,515	-		GFF3078	0.68	+0.7
3,147,515	-		GFF3078	0.68	+0.3
3,147,538	+		GFF3078	0.70	+0.2
3,147,538	+		GFF3078	0.70	+0.4
3,147,540	-		GFF3078	0.70	-1.8
3,147,546	-		GFF3078	0.71	+0.4
3,147,546	-		GFF3078	0.71	-0.4
3,147,546	-		GFF3078	0.71	+0.0
3,147,561	-		GFF3078	0.72	-2.1
3,147,568	-		GFF3078	0.73	-1.8
3,147,585	-		GFF3078	0.74	+0.7
3,147,588	+		GFF3078	0.75	-0.1
3,147,590	+		GFF3078	0.75	+1.1
3,147,590	-		GFF3078	0.75	-0.6
3,147,608	-		GFF3078	0.77	-1.1
3,147,608	-		GFF3078	0.77	+0.1
3,147,609	+		GFF3078	0.77	-0.8
3,147,623	+		GFF3078	0.78	-0.9
3,147,624	+		GFF3078	0.78	-0.7
3,147,637	-		GFF3078	0.80	+0.7
3,147,645	-		GFF3078	0.80	-1.6
3,147,713	+		GFF3078	0.87	-0.1
3,147,730	+		GFF3078	0.89	+0.3
3,147,730	+		GFF3078	0.89	-0.8
3,147,753	+				+0.0
3,147,761	-				-0.8
3,147,761	-				-0.9
3,147,788	+				-0.4
3,147,788	+				+0.8
3,147,788	+				-2.7
3,147,788	+				-0.9
3,147,788	+				+0.5
3,147,788	+				-1.7
3,147,790	-				-2.3
3,147,796	-				+1.1
3,147,796	-				-0.4
3,147,796	-				+0.2
3,147,796	-				+0.1
3,147,796	-				-1.3
3,147,796	-				-1.3
3,147,839	+				-1.7
3,147,840	-				+0.3
3,147,863	+				-0.5
3,147,863	+				+0.7
3,147,863	+				+0.4
3,147,863	+				-0.2
3,147,863	+				-1.5
3,147,863	-				-0.7
3,147,863	-				-0.3
3,147,865	-				-1.3
3,147,871	-				-0.2
3,147,871	-				-1.2
3,147,878	+				+1.1
3,147,878	+				-1.9
3,147,887	+				+0.3
3,147,888	-				-0.6
3,147,890	-				+0.6
3,147,891	-				-0.0
3,147,895	-				+0.1
3,147,897	+				+0.1
3,147,897	+				-0.3
3,147,897	+				+0.5
3,147,897	+				-1.4
3,147,897	+				+0.9
3,147,897	+				-1.5
3,147,902	+		GFF3079	0.10	+0.7
3,147,902	+		GFF3079	0.10	-0.3
3,147,902	+		GFF3079	0.10	-1.0
3,147,905	-		GFF3079	0.13	-0.1
3,147,905	-		GFF3079	0.13	+0.2
3,147,905	-		GFF3079	0.13	-1.0
3,147,905	-		GFF3079	0.13	-0.2
3,147,905	-		GFF3079	0.13	+0.3
3,147,905	-		GFF3079	0.13	-1.7
3,147,905	-		GFF3079	0.13	-1.6
3,147,905	-		GFF3079	0.13	-1.8
3,147,905	-		GFF3079	0.13	-2.6
3,147,905	-		GFF3079	0.13	-1.6
3,147,905	-		GFF3079	0.13	+0.1
3,147,910	-		GFF3079	0.17	-0.8
3,147,910	-		GFF3079	0.17	-0.7
3,147,910	-		GFF3079	0.17	-0.6
3,147,910	-		GFF3079	0.17	+1.1
3,147,910	-		GFF3079	0.17	+0.4
3,147,920	-		GFF3079	0.26	-0.1
3,147,923	+		GFF3079	0.28	-0.5
3,147,925	-		GFF3079	0.30	-0.9
3,147,929	-		GFF3079	0.33	+0.0
3,147,930	-		GFF3079	0.34	-1.3
3,147,954	+		GFF3079	0.55	+0.8
3,147,975	-		GFF3079	0.73	+0.4
3,148,028	+		GFF3080	0.29	-0.6
3,148,059	+		GFF3080	0.61	-0.3
3,148,059	+		GFF3080	0.61	-0.9
3,148,059	+		GFF3080	0.61	-0.8
3,148,059	+		GFF3080	0.61	+0.7
3,148,067	-		GFF3080	0.69	+0.3
3,148,067	-		GFF3080	0.69	+1.1
3,148,069	-		GFF3080	0.71	-0.4
3,148,069	-		GFF3080	0.71	+0.7
3,148,071	-		GFF3080	0.73	-0.0
3,148,072	-		GFF3080	0.74	-2.6
3,148,081	-		GFF3080	0.83	+0.3
3,148,086	+		GFF3080	0.88	-1.3
3,148,086	+		GFF3080	0.88	-1.0
3,148,086	+		GFF3080	0.88	+1.1
3,148,086	+		GFF3080	0.88	-0.6
3,148,094	-				-1.9
3,148,094	-				+0.5
3,148,094	-				-1.3
3,148,094	-				+0.1
3,148,096	+				+0.7
3,148,096	+				-0.7
3,148,096	+				-0.2
3,148,096	+				+0.0
3,148,098	+				-2.4
3,148,098	+				-1.6
3,148,098	+				+0.1
3,148,098	+				-0.8
3,148,098	+				+1.0
3,148,098	+				-1.4
3,148,098	+				-0.7
3,148,098	+				+0.6
3,148,098	+				+1.7
3,148,098	+				+0.9
3,148,099	-				-2.1
3,148,102	+				-1.1
3,148,103	+				+0.6
3,148,103	+				-2.1
3,148,103	+				-0.4
3,148,103	+				+1.4
3,148,103	+				+0.1
3,148,103	+				+0.7
3,148,103	+				+0.4
3,148,104	-				-0.8
3,148,104	-				-0.9
3,148,104	-				+0.5
3,148,106	-				-1.1
3,148,106	-				-1.0
3,148,106	-				-0.2
3,148,106	-				+0.7
3,148,106	-				+1.5
3,148,106	-				-1.3
3,148,106	-				+0.4
3,148,106	-				-0.1
3,148,106	-				-0.1
3,148,106	-				-0.6
3,148,108	+				-0.0
3,148,108	+				-1.4
3,148,111	-				-1.7
3,148,111	-				+0.5
3,148,111	-				-0.2
3,148,111	-				-1.0
3,148,111	-				+0.9
3,148,111	-				-1.6
3,148,111	-				+0.7
3,148,111	-				-2.3
3,148,111	-				-0.6
3,148,111	-				-0.4
3,148,115	+				+0.8
3,148,116	-				-0.1
3,148,116	-				+0.9
3,148,126	-				-1.1
3,148,178	-				+0.7
3,148,196	+		GFF3081	0.10	+0.0
3,148,196	+		GFF3081	0.10	+2.4
3,148,196	+		GFF3081	0.10	+0.5
3,148,198	+		GFF3081	0.10	-0.2
3,148,198	+		GFF3081	0.10	-0.3
3,148,203	+		GFF3081	0.11	-0.1
3,148,204	-		GFF3081	0.11	+1.1
3,148,204	-		GFF3081	0.11	+0.3
3,148,204	-		GFF3081	0.11	+1.2
3,148,204	-		GFF3081	0.11	+0.3
3,148,206	-		GFF3081	0.11	-1.4
3,148,211	-		GFF3081	0.12	+0.6
3,148,211	-		GFF3081	0.12	-0.6
3,148,217	+		GFF3081	0.12	+0.3
3,148,253	+		GFF3081	0.16	+1.1
3,148,258	+		GFF3081	0.17	-1.7
3,148,263	+		GFF3081	0.17	-0.6
3,148,263	+		GFF3081	0.17	+0.2
3,148,277	+		GFF3081	0.19	+1.0
3,148,280	-		GFF3081	0.19	+0.1
3,148,280	-		GFF3081	0.19	+0.1
3,148,284	+		GFF3081	0.20	-0.7
3,148,286	+		GFF3081	0.20	-0.6
3,148,286	+		GFF3081	0.20	-0.7
3,148,294	+		GFF3081	0.21	+0.3
3,148,297	-		GFF3081	0.21	-0.6
3,148,299	+		GFF3081	0.21	+0.6
3,148,384	+		GFF3081	0.31	-3.4
3,148,393	-		GFF3081	0.32	+0.7
3,148,420	-		GFF3081	0.35	+0.9
3,148,436	+		GFF3081	0.36	+0.9
3,148,442	-		GFF3081	0.37	+0.4
3,148,444	-		GFF3081	0.37	-0.3
3,148,444	-		GFF3081	0.37	+0.7
3,148,448	-		GFF3081	0.38	+0.8
3,148,448	-		GFF3081	0.38	-0.6
3,148,466	-		GFF3081	0.40	-0.3
3,148,472	-		GFF3081	0.40	-1.3
3,148,476	-		GFF3081	0.41	+0.3
3,148,481	+		GFF3081	0.41	-0.3
3,148,481	+		GFF3081	0.41	-1.7
3,148,489	-		GFF3081	0.42	-1.2
3,148,500	+		GFF3081	0.43	-1.9
3,148,500	+		GFF3081	0.43	-0.4
3,148,515	+		GFF3081	0.45	-0.4
3,148,537	+		GFF3081	0.48	+0.7
3,148,548	-		GFF3081	0.49	-2.1
3,148,554	+		GFF3081	0.49	-0.2
3,148,560	+		GFF3081	0.50	-0.3
3,148,573	+		GFF3081	0.51	-2.0
3,148,573	+		GFF3081	0.51	-1.7
3,148,573	+		GFF3081	0.51	-0.1
3,148,573	+		GFF3081	0.51	-1.6
3,148,573	+		GFF3081	0.51	+0.6
3,148,581	-		GFF3081	0.52	-0.6
3,148,581	-		GFF3081	0.52	-0.6
3,148,581	-		GFF3081	0.52	-0.2
3,148,581	-		GFF3081	0.52	+2.0
3,148,595	+		GFF3081	0.54	+0.2
3,148,603	-		GFF3081	0.55	+0.3
3,148,615	-		GFF3081	0.56	-1.4
3,148,656	+		GFF3081	0.61	+0.3
3,148,656	+		GFF3081	0.61	+1.2
3,148,656	+		GFF3081	0.61	-0.0
3,148,661	+		GFF3081	0.61	-0.6
3,148,661	+		GFF3081	0.61	-2.0
3,148,661	+		GFF3081	0.61	+0.3
3,148,664	-		GFF3081	0.61	+0.2
3,148,664	-		GFF3081	0.61	-1.3
3,148,664	-		GFF3081	0.61	+1.8
3,148,664	-		GFF3081	0.61	+0.0
3,148,666	+		GFF3081	0.62	+0.3
3,148,666	+		GFF3081	0.62	+0.3
3,148,666	+		GFF3081	0.62	-0.5
3,148,666	+		GFF3081	0.62	-0.7
3,148,669	-		GFF3081	0.62	+0.3
3,148,669	-		GFF3081	0.62	-0.6
3,148,669	-		GFF3081	0.62	-2.7
3,148,674	-		GFF3081	0.63	+0.3
3,148,674	-		GFF3081	0.63	+0.3
3,148,678	-		GFF3081	0.63	-1.8
3,148,708	+		GFF3081	0.66	+0.2
3,148,742	+		GFF3081	0.70	-1.6
3,148,745	-		GFF3081	0.70	-0.5
3,148,745	-		GFF3081	0.70	-0.3
3,148,750	-		GFF3081	0.71	-0.3
3,148,774	+		GFF3081	0.74	-0.3
3,148,805	+		GFF3081	0.77	-1.4
3,148,813	-		GFF3081	0.78	+0.3
3,148,823	-		GFF3081	0.79	+0.7
3,148,839	-		GFF3081	0.81	-1.7
3,148,875	+		GFF3081	0.85	-0.4
3,148,883	+		GFF3081	0.86	-1.0
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3,148,892	+		GFF3081	0.87	-1.1
3,148,900	-		GFF3081	0.87	-0.8
3,148,921	-		GFF3081	0.90	+0.8
3,148,925	+				+2.0
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3,148,926	-				-0.9
3,148,928	-				-0.0
3,148,947	-				-1.4
3,148,958	-				-0.4
3,148,972	+				+1.2
3,148,983	+				+0.1
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3,148,983	+				-2.0
3,148,991	-				-2.0
3,148,991	-				-0.6
3,148,991	-				-0.9
3,148,991	-				+0.2
3,148,991	-				-1.0