Strain Fitness in Sphingobium sp. HT1-2 around GFF3039

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,112,953	+		GFF3037	0.77	+0.1
3,112,997	-		GFF3037	0.79	-0.4
3,112,997	-		GFF3037	0.79	-0.0
3,113,010	+		GFF3037	0.79	-0.1
3,113,010	+		GFF3037	0.79	+0.4
3,113,018	-		GFF3037	0.80	-0.3
3,113,018	-		GFF3037	0.80	+0.5
3,113,041	+		GFF3037	0.81	+0.1
3,113,063	+		GFF3037	0.81	-2.0
3,113,066	-		GFF3037	0.82	-0.2
3,113,066	-		GFF3037	0.82	+0.5
3,113,066	-		GFF3037	0.82	-0.6
3,113,083	-		GFF3037	0.82	-2.1
3,113,097	-		GFF3037	0.83	+0.3
3,113,097	-		GFF3037	0.83	+0.9
3,113,108	-		GFF3037	0.83	-0.1
3,113,113	+		GFF3037	0.84	+0.5
3,113,159	-		GFF3037	0.85	-0.1
3,113,206	-		GFF3037	0.87	-0.9
3,113,218	+		GFF3037	0.88	-0.1
3,113,250	-		GFF3037	0.89	+0.3
3,113,252	+		GFF3037	0.89	+0.2
3,113,264	+		GFF3037	0.90	-0.1
3,113,266	+		GFF3037	0.90	+0.5
3,113,266	-		GFF3037	0.90	-1.5
3,113,273	-				-2.1
3,113,289	+				+0.2
3,113,297	-				-0.9
3,113,297	-				+0.3
3,113,297	-				-0.2
3,113,297	-				-0.4
3,113,297	-				+0.1
3,113,357	+				-1.8
3,113,364	+				-0.3
3,113,381	-				+0.5
3,113,389	-				+0.5
3,113,391	-				+0.4
3,113,453	+				+1.0
3,113,456	-				+0.4
3,113,456	-				+2.0
3,113,461	-				-1.4
3,113,461	-				+0.1
3,113,487	+				-0.0
3,113,504	+				+1.1
3,113,505	+				-0.7
3,113,505	+				+1.2
3,113,505	+				+1.2
3,113,512	-				+0.4
3,113,512	-				+1.0
3,113,512	-				-0.1
3,113,512	-				-0.9
3,113,535	-				+1.0
3,113,626	+				+1.2
3,113,648	+				+1.1
3,113,648	+				-0.8
3,113,648	+				-1.6
3,113,648	+				+0.7
3,113,648	+				-0.7
3,113,648	+				+0.3
3,113,648	+				+0.2
3,113,648	+				-2.1
3,113,648	+				+0.4
3,113,681	+		GFF3038	0.15	-0.6
3,113,689	-		GFF3038	0.19	-0.0
3,113,694	+		GFF3038	0.21	+0.2
3,113,702	-		GFF3038	0.25	-0.3
3,113,702	-		GFF3038	0.25	-0.8
3,113,717	+		GFF3038	0.32	-0.7
3,113,719	+		GFF3038	0.33	-0.3
3,113,720	-		GFF3038	0.34	-0.5
3,113,727	-		GFF3038	0.37	-0.6
3,113,727	-		GFF3038	0.37	-2.7
3,113,762	+		GFF3038	0.54	-0.2
3,113,764	+		GFF3038	0.55	-0.6
3,113,772	-		GFF3038	0.59	-1.0
3,113,914	-				+0.2
3,113,965	+				+0.8
3,114,076	+				-0.4
3,114,077	+				-0.5
3,114,077	+				-2.5
3,114,095	-				+0.1
3,114,095	-				+0.3
3,114,095	-				-1.3
3,114,128	+				+2.0
3,114,129	+				+0.6
3,114,183	+				-1.7
3,114,191	-				-0.1
3,114,191	-				+2.3
3,114,196	-				+0.0
3,114,203	+		GFF3039	0.10	-0.0
3,114,216	+		GFF3039	0.11	+0.7
3,114,232	+		GFF3039	0.11	+0.2
3,114,238	+		GFF3039	0.12	+0.5
3,114,285	+		GFF3039	0.13	+0.5
3,114,286	+		GFF3039	0.14	+0.5
3,114,287	+		GFF3039	0.14	-0.4
3,114,287	+		GFF3039	0.14	+1.2
3,114,293	-		GFF3039	0.14	-1.2
3,114,295	-		GFF3039	0.14	-1.1
3,114,295	-		GFF3039	0.14	+0.1
3,114,344	+		GFF3039	0.16	-0.5
3,114,352	-		GFF3039	0.16	+0.3
3,114,363	+		GFF3039	0.17	-0.3
3,114,371	-		GFF3039	0.17	+1.9
3,114,371	-		GFF3039	0.17	+0.3
3,114,404	+		GFF3039	0.18	+0.5
3,114,412	-		GFF3039	0.19	-0.6
3,114,442	-		GFF3039	0.20	+1.4
3,114,444	+		GFF3039	0.20	-0.4
3,114,452	-		GFF3039	0.20	+0.8
3,114,452	-		GFF3039	0.20	+0.3
3,114,452	-		GFF3039	0.20	-0.1
3,114,460	-		GFF3039	0.20	+0.8
3,114,535	-		GFF3039	0.23	-1.0
3,114,609	+		GFF3039	0.26	+0.1
3,114,609	+		GFF3039	0.26	-0.8
3,114,610	+		GFF3039	0.26	+1.2
3,114,617	+		GFF3039	0.27	-0.4
3,114,625	-		GFF3039	0.27	+0.0
3,114,651	+		GFF3039	0.28	-0.2
3,114,657	+		GFF3039	0.28	+0.7
3,114,657	+		GFF3039	0.28	-0.5
3,114,670	-		GFF3039	0.29	-0.4
3,114,672	+		GFF3039	0.29	-0.0
3,114,673	-		GFF3039	0.29	+0.4
3,114,684	+		GFF3039	0.29	-0.2
3,114,689	+		GFF3039	0.30	+0.7
3,114,697	-		GFF3039	0.30	+0.4
3,114,699	-		GFF3039	0.30	-0.6
3,114,720	-		GFF3039	0.31	-1.6
3,114,871	+		GFF3039	0.37	-1.6
3,114,879	-		GFF3039	0.37	-0.0
3,114,879	-		GFF3039	0.37	-0.0
3,114,879	-		GFF3039	0.37	+0.5
3,114,921	+		GFF3039	0.39	+0.5
3,114,946	-		GFF3039	0.40	+0.8
3,114,959	+		GFF3039	0.40	+0.6
3,114,977	+		GFF3039	0.41	-0.1
3,114,985	-		GFF3039	0.41	+0.5
3,114,995	-		GFF3039	0.42	-1.0
3,115,005	+		GFF3039	0.42	+0.0
3,115,005	+		GFF3039	0.42	-0.5
3,115,005	+		GFF3039	0.42	-1.3
3,115,005	+		GFF3039	0.42	+1.0
3,115,005	+		GFF3039	0.42	-0.5
3,115,005	+		GFF3039	0.42	+0.2
3,115,005	+		GFF3039	0.42	+0.4
3,115,013	-		GFF3039	0.43	-1.3
3,115,013	-		GFF3039	0.43	-0.6
3,115,013	-		GFF3039	0.43	+0.8
3,115,013	-		GFF3039	0.43	+0.7
3,115,013	-		GFF3039	0.43	+0.2
3,115,013	-		GFF3039	0.43	+0.7
3,115,013	-		GFF3039	0.43	+0.7
3,115,013	-		GFF3039	0.43	+0.1
3,115,013	-		GFF3039	0.43	-0.2
3,115,013	-		GFF3039	0.43	+0.2
3,115,013	-		GFF3039	0.43	+0.1
3,115,013	-		GFF3039	0.43	-1.5
3,115,020	-		GFF3039	0.43	+1.0
3,115,025	-		GFF3039	0.43	+0.6
3,115,028	-		GFF3039	0.43	+1.0
3,115,029	+		GFF3039	0.43	-1.2
3,115,061	-		GFF3039	0.44	+0.7
3,115,113	+		GFF3039	0.46	+0.0
3,115,121	-		GFF3039	0.47	+0.3
3,115,126	-		GFF3039	0.47	+0.7
3,115,145	+		GFF3039	0.48	+1.3
3,115,148	-		GFF3039	0.48	+1.1
3,115,153	-		GFF3039	0.48	+2.7
3,115,153	-		GFF3039	0.48	-1.5
3,115,153	-		GFF3039	0.48	-0.1
3,115,155	-		GFF3039	0.48	+0.4
3,115,194	-		GFF3039	0.50	-0.7
3,115,202	-		GFF3039	0.50	+1.8
3,115,224	+		GFF3039	0.51	-0.1
3,115,224	+		GFF3039	0.51	+1.6
3,115,232	-		GFF3039	0.51	-0.7
3,115,232	-		GFF3039	0.51	+1.4
3,115,232	-		GFF3039	0.51	-0.6
3,115,232	-		GFF3039	0.51	+0.2
3,115,232	-		GFF3039	0.51	-0.6
3,115,235	+		GFF3039	0.51	-0.3
3,115,238	-		GFF3039	0.51	-0.9
3,115,243	-		GFF3039	0.52	-0.5
3,115,258	+		GFF3039	0.52	+0.6
3,115,346	+		GFF3039	0.56	-0.3
3,115,349	-		GFF3039	0.56	+0.7
3,115,354	-		GFF3039	0.56	+0.1
3,115,356	+		GFF3039	0.56	+0.1
3,115,364	-		GFF3039	0.56	+3.4
3,115,366	+		GFF3039	0.57	-1.1
3,115,369	-		GFF3039	0.57	+0.4
3,115,374	-		GFF3039	0.57	+0.3
3,115,376	+		GFF3039	0.57	+0.5
3,115,426	-		GFF3039	0.59	+0.4
3,115,444	-		GFF3039	0.60	-0.1
3,115,452	+		GFF3039	0.60	+1.0
3,115,471	+		GFF3039	0.61	+0.4
3,115,511	-		GFF3039	0.62	-0.0
3,115,533	-		GFF3039	0.63	-0.8
3,115,546	+		GFF3039	0.64	+2.1
3,115,546	-		GFF3039	0.64	+2.8
3,115,569	+		GFF3039	0.65	-1.1
3,115,588	-		GFF3039	0.65	+0.2
3,115,613	+		GFF3039	0.66	-1.1
3,115,625	-		GFF3039	0.67	+0.4
3,115,625	-		GFF3039	0.67	+1.1
3,115,739	-		GFF3039	0.71	-0.7
3,115,743	+		GFF3039	0.72	+1.5
3,115,751	-		GFF3039	0.72	+1.6
3,115,770	+		GFF3039	0.73	+0.9
3,115,862	+		GFF3039	0.76	-0.3
3,115,870	-		GFF3039	0.77	+1.1
3,115,872	+		GFF3039	0.77	+0.5
3,115,872	+		GFF3039	0.77	+1.1
3,115,880	-		GFF3039	0.77	+0.3
3,115,880	-		GFF3039	0.77	+1.4
3,115,979	-		GFF3039	0.81	-1.1
3,116,049	+		GFF3039	0.84	+0.1
3,116,122	+		GFF3039	0.87	-2.3
3,116,135	+		GFF3039	0.87	+1.2
3,116,135	+		GFF3039	0.87	+1.0
3,116,143	+		GFF3039	0.88	-0.1
3,116,143	+		GFF3039	0.88	+0.7
3,116,151	-		GFF3039	0.88	-0.7
3,116,214	+				+0.6
3,116,215	+				-1.8
3,116,246	+				-0.8
3,116,257	+				+1.2
3,116,299	+				+0.2
3,116,315	-				-0.6
3,116,322	+				-0.9
3,116,341	+				-0.9
3,116,341	+				+1.2
3,116,344	-				-1.6
3,116,346	+				+0.3
3,116,346	+				+1.0
3,116,352	+				-3.1
3,116,354	-				+0.6
3,116,360	-				+1.1
3,116,360	-				+0.1
3,116,360	-				-0.5
3,116,362	+				-0.8
3,116,365	-				-1.1
3,116,365	-				-1.3
3,116,365	-				+1.4
3,116,369	+				-1.8
3,116,369	+				-0.2
3,116,369	+				+0.1
3,116,370	-				-0.4
3,116,370	-				+2.7
3,116,370	-				-1.0
3,116,370	-				+2.1
3,116,370	-				-0.6
3,116,370	-				-0.9
3,116,370	-				+0.1
3,116,377	-				-1.2
3,116,377	-				-0.5
3,116,377	-				-0.5
3,116,377	-				+0.1
3,116,377	-				-0.1
3,116,404	+				+0.2
3,116,407	-				-2.3
3,116,407	-				-1.2
3,116,409	+				-0.2
3,116,412	-				-0.6
3,116,465	+				-0.9
3,116,469	-				-1.8
3,116,469	-				+0.3
3,116,480	+				-0.1
3,116,488	-				+0.6
3,116,488	-				+2.4
3,116,488	-				+1.1
3,116,488	-				-0.5
3,116,488	-				-0.8
3,116,537	-				+0.4
3,116,549	+				+0.9
3,116,570	-				+1.0
3,116,670	+		GFF3040	0.55	+1.2
3,116,680	+		GFF3040	0.61	+0.3
3,116,703	+		GFF3040	0.74	+0.2
3,116,706	+		GFF3040	0.76	-1.1
3,116,735	+				+0.4
3,116,741	+				-2.2
3,116,763	+				+0.7
3,116,787	+				-0.4
3,116,871	-		GFF3041	0.11	-0.3
3,116,889	-		GFF3041	0.13	-0.0
3,116,895	+		GFF3041	0.14	+0.6
3,116,905	-		GFF3041	0.15	-0.2
3,116,907	+		GFF3041	0.15	+0.4
3,116,907	+		GFF3041	0.15	-0.1
3,116,915	-		GFF3041	0.16	-0.2
3,116,917	-		GFF3041	0.16	-0.3
3,116,936	-		GFF3041	0.18	+1.4
3,116,944	+		GFF3041	0.19	-1.2
3,116,949	+		GFF3041	0.19	-1.3
3,116,952	-		GFF3041	0.20	-0.3
3,117,101	-		GFF3041	0.36	-0.2
3,117,103	+		GFF3041	0.36	+1.2
3,117,103	+		GFF3041	0.36	+0.9
3,117,169	+		GFF3041	0.43	-0.7
3,117,237	+		GFF3041	0.50	+2.4
3,117,240	-		GFF3041	0.50	+2.2
3,117,244	+		GFF3041	0.51	-0.6
3,117,245	-		GFF3041	0.51	-0.8
3,117,245	-		GFF3041	0.51	-2.2
3,117,245	-		GFF3041	0.51	-0.5
3,117,245	-		GFF3041	0.51	+0.1
3,117,252	-		GFF3041	0.52	-1.9
3,117,333	-		GFF3041	0.60	+0.5
3,117,353	-		GFF3041	0.62	-1.1
3,117,418	+		GFF3041	0.69	+0.8
3,117,426	+		GFF3041	0.70	-0.6
3,117,438	+		GFF3041	0.71	+0.0