Strain Fitness in Sphingobium sp. HT1-2 around GFF3017

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,082,741	-				-1.2
3,082,759	-				+0.1
3,082,759	-				-0.8
3,082,763	+				-2.2
3,082,763	+				-0.3
3,082,771	-				+0.8
3,082,771	-				-0.3
3,082,771	-				-1.2
3,082,775	+				-1.8
3,082,776	-				-2.6
3,082,816	+				+0.6
3,082,816	+				-2.1
3,082,816	+				+1.3
3,082,824	-				-0.2
3,082,824	-				+0.1
3,082,826	+				-0.2
3,082,826	+				+0.5
3,082,826	+				-0.1
3,082,826	+				+1.1
3,082,826	+				+0.3
3,082,826	+				-0.2
3,082,826	+				-1.6
3,082,826	+				-0.6
3,082,826	+				-2.0
3,082,826	+				-0.3
3,082,834	-				+0.5
3,082,834	-				+0.0
3,082,834	-				-1.4
3,082,834	-				+2.7
3,082,839	-				-1.3
3,082,840	+				+0.1
3,082,843	-				-0.3
3,082,844	-				+0.0
3,082,844	-				+0.9
3,082,844	-				-1.7
3,082,856	+				+1.4
3,082,856	+				+0.1
3,082,856	+				-0.2
3,082,856	+				+0.0
3,082,856	+				-3.0
3,082,856	+				-0.1
3,082,856	+				-1.4
3,082,856	+				+0.3
3,082,856	+				-1.6
3,082,856	+				-0.4
3,082,856	+				-0.5
3,082,856	+				+0.6
3,082,856	+				+1.7
3,082,856	+				-0.9
3,082,859	-				-1.4
3,082,861	+				+0.4
3,082,864	-				+0.3
3,082,864	-				+0.7
3,082,864	-				+0.7
3,082,864	-				+0.3
3,082,864	-				+0.9
3,082,864	-				-0.4
3,082,864	-				+0.2
3,082,864	-				-0.8
3,082,869	-				+0.1
3,082,869	-				-1.3
3,082,879	-				-0.3
3,082,890	+				-0.5
3,082,896	-				-1.0
3,082,896	-				-1.4
3,082,923	+				-0.3
3,082,947	+		GFF3016	0.12	+0.3
3,082,947	+		GFF3016	0.12	+0.8
3,082,948	+		GFF3016	0.12	-1.9
3,082,948	+		GFF3016	0.12	-0.5
3,082,956	-		GFF3016	0.13	+0.2
3,082,956	-		GFF3016	0.13	-1.5
3,082,966	-		GFF3016	0.14	-1.2
3,082,997	-		GFF3016	0.17	+1.1
3,083,000	+		GFF3016	0.18	+0.3
3,083,015	+		GFF3016	0.19	-0.7
3,083,015	+		GFF3016	0.19	-0.2
3,083,015	+		GFF3016	0.19	-2.4
3,083,015	+		GFF3016	0.19	-0.1
3,083,015	+		GFF3016	0.19	+0.6
3,083,025	+		GFF3016	0.21	-1.1
3,083,059	-		GFF3016	0.24	-0.3
3,083,072	+		GFF3016	0.26	+0.2
3,083,072	-		GFF3016	0.26	-1.0
3,083,080	-		GFF3016	0.27	-0.4
3,083,091	-		GFF3016	0.28	+0.2
3,083,093	+		GFF3016	0.28	-0.4
3,083,101	-		GFF3016	0.29	-2.1
3,083,101	-		GFF3016	0.29	+0.1
3,083,117	-		GFF3016	0.31	+0.4
3,083,117	-		GFF3016	0.31	-0.1
3,083,133	+		GFF3016	0.33	+0.7
3,083,145	+		GFF3016	0.34	+1.1
3,083,145	+		GFF3016	0.34	-0.5
3,083,153	+		GFF3016	0.35	+0.3
3,083,153	+		GFF3016	0.35	-1.7
3,083,153	-		GFF3016	0.35	+0.5
3,083,161	-		GFF3016	0.36	+0.4
3,083,180	-		GFF3016	0.38	+0.3
3,083,185	+		GFF3016	0.39	-0.3
3,083,185	+		GFF3016	0.39	+0.4
3,083,185	+		GFF3016	0.39	-0.4
3,083,185	+		GFF3016	0.39	-1.4
3,083,190	+		GFF3016	0.39	+0.8
3,083,190	+		GFF3016	0.39	+0.3
3,083,191	+		GFF3016	0.40	+0.5
3,083,191	+		GFF3016	0.40	-2.1
3,083,193	-		GFF3016	0.40	-0.2
3,083,193	-		GFF3016	0.40	+1.0
3,083,193	-		GFF3016	0.40	-0.7
3,083,193	-		GFF3016	0.40	+0.3
3,083,193	-		GFF3016	0.40	-2.0
3,083,199	-		GFF3016	0.40	-0.5
3,083,205	+		GFF3016	0.41	-3.1
3,083,209	-		GFF3016	0.42	+0.8
3,083,241	-		GFF3016	0.45	-0.2
3,083,243	+		GFF3016	0.45	-0.7
3,083,251	-		GFF3016	0.46	+1.8
3,083,270	+		GFF3016	0.49	-0.4
3,083,270	+		GFF3016	0.49	+0.2
3,083,274	+		GFF3016	0.49	+1.3
3,083,274	+		GFF3016	0.49	-0.6
3,083,276	+		GFF3016	0.49	+0.3
3,083,278	-		GFF3016	0.49	-1.2
3,083,278	-		GFF3016	0.49	-1.0
3,083,282	-		GFF3016	0.50	-1.1
3,083,289	-		GFF3016	0.51	+1.5
3,083,342	-		GFF3016	0.57	-2.1
3,083,342	-		GFF3016	0.57	-1.3
3,083,356	+		GFF3016	0.58	-0.7
3,083,357	+		GFF3016	0.59	-0.6
3,083,357	+		GFF3016	0.59	-2.6
3,083,365	-		GFF3016	0.59	-0.1
3,083,370	+		GFF3016	0.60	-1.2
3,083,370	+		GFF3016	0.60	+0.4
3,083,370	+		GFF3016	0.60	-1.9
3,083,370	+		GFF3016	0.60	-0.7
3,083,373	-		GFF3016	0.60	-0.1
3,083,378	-		GFF3016	0.61	-0.6
3,083,378	-		GFF3016	0.61	+0.3
3,083,378	-		GFF3016	0.61	-1.5
3,083,381	-		GFF3016	0.61	-0.8
3,083,396	+		GFF3016	0.63	-0.6
3,083,404	-		GFF3016	0.64	-0.0
3,083,411	+		GFF3016	0.65	-0.6
3,083,411	+		GFF3016	0.65	-0.1
3,083,419	-		GFF3016	0.66	+0.5
3,083,453	+		GFF3016	0.70	-0.5
3,083,453	+		GFF3016	0.70	-1.4
3,083,453	+		GFF3016	0.70	+1.2
3,083,460	-		GFF3016	0.70	+0.1
3,083,472	+		GFF3016	0.72	+1.4
3,083,482	-		GFF3016	0.73	-0.3
3,083,485	+		GFF3016	0.73	+0.3
3,083,498	-		GFF3016	0.75	-0.0
3,083,498	-		GFF3016	0.75	-1.2
3,083,498	-		GFF3016	0.75	-0.3
3,083,499	+		GFF3016	0.75	-2.1
3,083,499	+		GFF3016	0.75	-0.2
3,083,499	+		GFF3016	0.75	-0.6
3,083,503	-		GFF3016	0.75	-0.8
3,083,504	+		GFF3016	0.75	-0.6
3,083,504	+		GFF3016	0.75	-1.5
3,083,504	+		GFF3016	0.75	-0.6
3,083,504	+		GFF3016	0.75	-0.4
3,083,504	+		GFF3016	0.75	-1.5
3,083,504	+		GFF3016	0.75	-1.1
3,083,504	+		GFF3016	0.75	+1.6
3,083,509	+		GFF3016	0.76	+0.1
3,083,512	-		GFF3016	0.76	-0.4
3,083,512	-		GFF3016	0.76	+0.5
3,083,512	-		GFF3016	0.76	-0.1
3,083,512	-		GFF3016	0.76	-0.2
3,083,512	-		GFF3016	0.76	-0.5
3,083,527	-		GFF3016	0.78	-1.4
3,083,531	+		GFF3016	0.78	-0.5
3,083,531	+		GFF3016	0.78	-1.2
3,083,539	-		GFF3016	0.79	-1.1
3,083,541	+		GFF3016	0.80	-0.4
3,083,541	+		GFF3016	0.80	+0.0
3,083,546	+		GFF3016	0.80	-1.0
3,083,549	-		GFF3016	0.81	+1.5
3,083,554	+		GFF3016	0.81	+0.3
3,083,630	+		GFF3016	0.90	+1.1
3,083,633	-				+1.6
3,083,639	+				-2.4
3,083,639	+				+0.8
3,083,639	+				-0.6
3,083,639	+				-0.3
3,083,649	+				-0.9
3,083,658	+				+0.2
3,083,667	+				-0.2
3,083,670	-				-0.3
3,083,675	-				+0.1
3,083,697	-				-1.1
3,083,720	-				+0.2
3,083,725	+				-0.2
3,083,738	+				-0.5
3,083,738	+				+0.2
3,083,738	+				-1.6
3,083,738	+				-0.3
3,083,738	+				-0.1
3,083,740	+				-1.9
3,083,740	+				-0.1
3,083,740	+				-1.8
3,083,746	+				-1.2
3,083,746	-				+0.0
3,083,746	-				-1.0
3,083,746	-				+1.0
3,083,746	-				-0.4
3,083,746	-				-1.1
3,083,748	-				+0.3
3,083,754	-				-1.0
3,083,765	+				+0.5
3,083,765	+				-0.3
3,083,765	+				-1.2
3,083,765	+				-0.8
3,083,765	+				-0.7
3,083,775	+				-2.8
3,083,775	+				-1.1
3,083,775	+				-0.3
3,083,783	-				+0.8
3,083,793	-				+0.3
3,083,793	-				+0.6
3,083,794	+				+0.1
3,083,806	+				-0.4
3,083,840	+				-0.6
3,083,867	-				-1.2
3,083,869	+				-0.7
3,083,877	-				+1.5
3,083,887	+		GFF3017	0.11	-1.4
3,083,931	-		GFF3017	0.14	-2.3
3,083,945	-		GFF3017	0.15	+0.9
3,083,951	+		GFF3017	0.15	-0.7
3,083,954	-		GFF3017	0.15	-2.1
3,083,956	+		GFF3017	0.15	+0.1
3,083,959	-		GFF3017	0.16	-2.5
3,083,964	-		GFF3017	0.16	-0.8
3,083,969	-		GFF3017	0.16	+0.3
3,083,977	-		GFF3017	0.17	-0.1
3,083,978	+		GFF3017	0.17	+0.4
3,083,978	+		GFF3017	0.17	-0.4
3,083,986	+		GFF3017	0.17	+0.0
3,083,986	-		GFF3017	0.17	-1.3
3,083,993	+		GFF3017	0.18	+0.6
3,083,993	+		GFF3017	0.18	+1.0
3,083,993	+		GFF3017	0.18	-2.5
3,083,996	-		GFF3017	0.18	-0.1
3,083,996	-		GFF3017	0.18	-0.8
3,084,001	-		GFF3017	0.18	-0.7
3,084,009	-		GFF3017	0.19	+0.3
3,084,010	+		GFF3017	0.19	+1.0
3,084,015	+		GFF3017	0.19	+1.4
3,084,017	-		GFF3017	0.19	-1.3
3,084,018	-		GFF3017	0.20	-1.9
3,084,065	+		GFF3017	0.23	-0.1
3,084,122	+		GFF3017	0.27	-1.5
3,084,126	-		GFF3017	0.27	+1.1
3,084,130	-		GFF3017	0.27	+0.2
3,084,162	+		GFF3017	0.29	+1.7
3,084,170	-		GFF3017	0.30	-0.7
3,084,223	+		GFF3017	0.33	-1.8
3,084,231	-		GFF3017	0.34	+0.5
3,084,231	-		GFF3017	0.34	-2.3
3,084,306	+		GFF3017	0.39	-0.2
3,084,338	-		GFF3017	0.41	-0.2
3,084,340	+		GFF3017	0.41	-0.4
3,084,344	+		GFF3017	0.42	-1.2
3,084,344	+		GFF3017	0.42	-0.2
3,084,344	+		GFF3017	0.42	+0.1
3,084,344	+		GFF3017	0.42	+1.3
3,084,344	+		GFF3017	0.42	-1.1
3,084,344	+		GFF3017	0.42	+0.1
3,084,347	-		GFF3017	0.42	-0.1
3,084,348	-		GFF3017	0.42	-1.9
3,084,352	-		GFF3017	0.42	+0.3
3,084,352	-		GFF3017	0.42	-1.1
3,084,352	-		GFF3017	0.42	-1.9
3,084,373	-		GFF3017	0.44	-0.2
3,084,379	+		GFF3017	0.44	-0.6
3,084,387	-		GFF3017	0.45	-2.0
3,084,387	-		GFF3017	0.45	-0.8
3,084,387	-		GFF3017	0.45	-0.2
3,084,392	-		GFF3017	0.45	+0.8
3,084,460	+		GFF3017	0.50	-0.4
3,084,473	-		GFF3017	0.50	-1.2
3,084,552	+		GFF3017	0.56	-0.1
3,084,582	-		GFF3017	0.58	+0.3
3,084,647	-		GFF3017	0.62	-1.3
3,084,651	+		GFF3017	0.63	+0.8
3,084,710	+		GFF3017	0.67	+0.9
3,084,719	-		GFF3017	0.67	+0.8
3,084,737	+		GFF3017	0.68	+1.0
3,084,740	+		GFF3017	0.69	+0.4
3,084,742	+		GFF3017	0.69	+0.0
3,084,742	+		GFF3017	0.69	+0.3
3,084,747	+		GFF3017	0.69	-1.7
3,084,750	+		GFF3017	0.69	-1.1
3,084,750	-		GFF3017	0.69	+1.5
3,084,752	+		GFF3017	0.69	+0.4
3,084,752	+		GFF3017	0.69	-3.0
3,084,776	+		GFF3017	0.71	-1.5
3,084,790	-		GFF3017	0.72	-0.8
3,084,815	+		GFF3017	0.74	-1.2
3,084,827	+		GFF3017	0.74	-0.4
3,084,827	+		GFF3017	0.74	-0.2
3,084,827	+		GFF3017	0.74	-1.0
3,084,827	+		GFF3017	0.74	-0.9
3,084,827	+		GFF3017	0.74	-2.2
3,084,827	+		GFF3017	0.74	-0.5
3,084,827	+		GFF3017	0.74	-0.7
3,084,827	+		GFF3017	0.74	-0.1
3,084,827	+		GFF3017	0.74	-0.3
3,084,827	+		GFF3017	0.74	-1.6
3,084,827	+		GFF3017	0.74	-1.2
3,084,827	+		GFF3017	0.74	-1.2
3,084,827	+		GFF3017	0.74	+1.4
3,084,835	+		GFF3017	0.75	-2.4
3,084,835	-		GFF3017	0.75	-0.5
3,084,835	-		GFF3017	0.75	+0.5
3,084,835	-		GFF3017	0.75	-0.4
3,084,835	-		GFF3017	0.75	-0.1
3,084,835	-		GFF3017	0.75	-0.6
3,084,835	-		GFF3017	0.75	-0.3
3,084,835	-		GFF3017	0.75	+0.3
3,084,835	-		GFF3017	0.75	+0.1
3,084,861	-		GFF3017	0.77	-0.1
3,084,863	+		GFF3017	0.77	-1.2
3,084,883	+		GFF3017	0.78	-0.5
3,084,887	-		GFF3017	0.79	-0.5
3,084,901	-		GFF3017	0.79	-0.6
3,084,901	-		GFF3017	0.79	+1.3
3,084,901	-		GFF3017	0.79	+0.0
3,084,901	-		GFF3017	0.79	-0.3
3,084,901	-		GFF3017	0.79	-0.5
3,084,901	-		GFF3017	0.79	+1.1
3,084,903	+		GFF3017	0.80	+0.9
3,084,908	+		GFF3017	0.80	-1.4
3,084,908	+		GFF3017	0.80	-1.4
3,084,908	+		GFF3017	0.80	+1.2
3,084,908	+		GFF3017	0.80	-0.4
3,084,908	+		GFF3017	0.80	+0.4
3,084,908	+		GFF3017	0.80	+0.1
3,084,908	+		GFF3017	0.80	-0.5
3,084,908	+		GFF3017	0.80	-1.8
3,084,908	+		GFF3017	0.80	+0.2
3,084,908	+		GFF3017	0.80	-0.4
3,084,908	+		GFF3017	0.80	-2.7
3,084,908	+		GFF3017	0.80	+0.1
3,084,908	+		GFF3017	0.80	+0.0
3,084,908	+		GFF3017	0.80	-0.3
3,084,908	+		GFF3017	0.80	-0.3
3,084,908	+		GFF3017	0.80	-0.1
3,084,908	+		GFF3017	0.80	-2.2
3,084,908	+		GFF3017	0.80	+0.4
3,084,916	-		GFF3017	0.81	-0.4
3,084,916	-		GFF3017	0.81	+0.3
3,084,916	-		GFF3017	0.81	-1.8
3,084,916	-		GFF3017	0.81	+0.5
3,084,916	-		GFF3017	0.81	+1.5
3,084,916	-		GFF3017	0.81	+0.3
3,084,916	-		GFF3017	0.81	+0.7
3,084,916	-		GFF3017	0.81	-2.3
3,084,916	-		GFF3017	0.81	-1.2
3,084,916	-		GFF3017	0.81	-2.3
3,084,916	-		GFF3017	0.81	-0.1
3,084,959	+		GFF3017	0.83	-1.0
3,084,964	+		GFF3017	0.84	-0.9
3,084,973	+		GFF3017	0.84	-0.1
3,084,981	-		GFF3017	0.85	+0.4
3,084,981	-		GFF3017	0.85	-0.7
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3,085,114	+				+0.5
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3,085,189	+				-1.5
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3,085,191	+				+0.5
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3,085,199	-				+0.7
3,085,199	-				+0.6
3,085,199	-				-1.4
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3,085,265	+				-0.5
3,085,265	+				+0.1
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3,085,295	+				+1.4
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3,085,465	+		GFF3018	0.31	-1.7
3,085,485	-		GFF3018	0.34	-1.1
3,085,512	+		GFF3018	0.38	-2.8
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3,085,512	+		GFF3018	0.38	+0.1
3,085,512	+		GFF3018	0.38	-1.5
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3,085,520	-		GFF3018	0.39	-0.3
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3,085,769	-		GFF3018	0.79	-1.3
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3,085,856	-				+0.0
3,085,865	+				-1.3
3,085,869	+				+0.3
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3,085,894	+				-0.6
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3,085,933	-				-0.0
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3,085,933	-				+0.3
3,085,933	-				+0.7
3,085,933	-				-0.3
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3,085,936	+				+0.4
3,085,954	-				+0.5
3,085,956	+				+0.3
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3,085,961	+				-0.5
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3,085,971	+				+1.2
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3,085,989	-				+0.1
3,085,989	-				-1.9
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3,086,001	+				+1.3
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3,086,019	+				-0.2
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3,086,026	-				-0.8
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3,086,026	-				-0.5
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3,086,027	-				+1.5
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3,086,031	-				-2.4
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3,086,092	+		GFF3019	0.11	+1.0
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3,086,200	+		GFF3019	0.18	-0.4