Strain Fitness in Sphingobium sp. HT1-2 around GFF3015

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,080,721	-		GFF3014	0.27	-0.5
3,080,773	+		GFF3014	0.31	-2.6
3,080,773	+		GFF3014	0.31	+0.1
3,080,773	+		GFF3014	0.31	-1.0
3,080,773	+		GFF3014	0.31	+0.8
3,080,781	-		GFF3014	0.31	-0.7
3,080,781	-		GFF3014	0.31	+0.5
3,080,781	-		GFF3014	0.31	+0.3
3,080,793	+		GFF3014	0.32	+0.3
3,080,796	+		GFF3014	0.32	-0.5
3,080,796	+		GFF3014	0.32	-0.1
3,080,808	+		GFF3014	0.33	-0.8
3,080,827	+		GFF3014	0.35	-0.8
3,080,864	+		GFF3014	0.37	+0.5
3,080,869	+		GFF3014	0.38	-0.3
3,080,872	-		GFF3014	0.38	+1.0
3,080,877	-		GFF3014	0.38	+1.1
3,080,877	-		GFF3014	0.38	-0.1
3,080,884	+		GFF3014	0.39	+0.5
3,080,888	+		GFF3014	0.39	-0.6
3,080,888	+		GFF3014	0.39	+1.0
3,080,896	-		GFF3014	0.40	-0.8
3,080,904	+		GFF3014	0.40	-0.7
3,080,934	-		GFF3014	0.42	+0.4
3,080,938	-		GFF3014	0.43	-0.3
3,080,962	+		GFF3014	0.44	+0.5
3,080,967	+		GFF3014	0.45	+0.4
3,080,967	+		GFF3014	0.45	-2.0
3,080,967	+		GFF3014	0.45	-0.7
3,080,967	+		GFF3014	0.45	-2.6
3,080,972	+		GFF3014	0.45	+0.4
3,080,975	-		GFF3014	0.45	-1.3
3,080,975	-		GFF3014	0.45	-1.3
3,080,975	-		GFF3014	0.45	-0.8
3,080,975	-		GFF3014	0.45	-0.4
3,080,978	+		GFF3014	0.46	+1.3
3,080,978	+		GFF3014	0.46	-0.1
3,080,980	-		GFF3014	0.46	+0.7
3,080,994	+		GFF3014	0.47	+0.2
3,080,994	+		GFF3014	0.47	-0.5
3,080,994	+		GFF3014	0.47	-1.2
3,080,994	+		GFF3014	0.47	+0.3
3,081,002	-		GFF3014	0.47	-0.3
3,081,002	-		GFF3014	0.47	+1.1
3,081,002	-		GFF3014	0.47	+1.1
3,081,002	-		GFF3014	0.47	-2.2
3,081,031	+		GFF3014	0.49	+0.3
3,081,034	-		GFF3014	0.50	+0.1
3,081,036	+		GFF3014	0.50	-0.9
3,081,036	+		GFF3014	0.50	-0.4
3,081,036	+		GFF3014	0.50	+1.9
3,081,036	+		GFF3014	0.50	-1.1
3,081,036	+		GFF3014	0.50	-1.3
3,081,036	+		GFF3014	0.50	-0.0
3,081,044	-		GFF3014	0.50	-0.9
3,081,050	+		GFF3014	0.51	-1.7
3,081,050	+		GFF3014	0.51	-0.6
3,081,050	+		GFF3014	0.51	-0.0
3,081,058	-		GFF3014	0.51	-1.8
3,081,058	-		GFF3014	0.51	-0.2
3,081,067	-		GFF3014	0.52	-1.7
3,081,165	-		GFF3014	0.59	-2.0
3,081,170	-		GFF3014	0.60	-1.4
3,081,211	-		GFF3014	0.63	-0.7
3,081,218	+		GFF3014	0.63	-0.1
3,081,226	-		GFF3014	0.64	+1.3
3,081,231	-		GFF3014	0.64	+1.1
3,081,236	-		GFF3014	0.64	-0.3
3,081,236	-		GFF3014	0.64	-1.2
3,081,236	-		GFF3014	0.64	+1.4
3,081,236	-		GFF3014	0.64	+0.2
3,081,236	-		GFF3014	0.64	+0.7
3,081,236	-		GFF3014	0.64	-1.0
3,081,239	+		GFF3014	0.65	+0.2
3,081,249	+		GFF3014	0.65	+0.1
3,081,296	-		GFF3014	0.69	-0.7
3,081,300	+		GFF3014	0.69	-0.7
3,081,308	-		GFF3014	0.70	+1.1
3,081,308	-		GFF3014	0.70	-0.8
3,081,330	+		GFF3014	0.71	+0.6
3,081,330	+		GFF3014	0.71	-1.4
3,081,330	+		GFF3014	0.71	+0.9
3,081,330	+		GFF3014	0.71	-1.0
3,081,333	-		GFF3014	0.72	-0.7
3,081,338	+		GFF3014	0.72	-0.0
3,081,338	-		GFF3014	0.72	+0.9
3,081,338	-		GFF3014	0.72	-0.2
3,081,345	+		GFF3014	0.72	+1.2
3,081,378	-		GFF3014	0.75	+1.1
3,081,385	+		GFF3014	0.75	+0.2
3,081,385	-		GFF3014	0.75	-1.1
3,081,437	-		GFF3014	0.79	-0.1
3,081,446	+		GFF3014	0.80	+1.7
3,081,483	+		GFF3014	0.83	-1.1
3,081,483	+		GFF3014	0.83	+0.3
3,081,483	+		GFF3014	0.83	-0.9
3,081,502	-		GFF3014	0.84	-0.6
3,081,506	+		GFF3014	0.84	+0.3
3,081,512	-		GFF3014	0.85	-1.6
3,081,516	+		GFF3014	0.85	+0.4
3,081,524	-		GFF3014	0.86	-0.1
3,081,524	-		GFF3014	0.86	-1.2
3,081,529	-		GFF3014	0.86	-1.0
3,081,535	+		GFF3014	0.86	-2.7
3,081,535	+		GFF3014	0.86	-1.3
3,081,540	+		GFF3014	0.87	+0.3
3,081,540	+		GFF3014	0.87	+1.1
3,081,540	+		GFF3014	0.87	+0.6
3,081,540	+		GFF3014	0.87	-1.2
3,081,540	+		GFF3014	0.87	-0.2
3,081,540	+		GFF3014	0.87	-0.8
3,081,540	+		GFF3014	0.87	-0.1
3,081,540	+		GFF3014	0.87	+0.3
3,081,543	-		GFF3014	0.87	+0.4
3,081,543	-		GFF3014	0.87	+2.1
3,081,548	-		GFF3014	0.87	-0.5
3,081,548	-		GFF3014	0.87	-0.9
3,081,548	-		GFF3014	0.87	+0.4
3,081,548	-		GFF3014	0.87	+0.3
3,081,549	-		GFF3014	0.87	-2.3
3,081,560	-		GFF3014	0.88	-1.6
3,081,565	-		GFF3014	0.89	+0.8
3,081,565	-		GFF3014	0.89	+0.8
3,081,567	+		GFF3014	0.89	-1.4
3,081,613	+				-0.9
3,081,643	+				-1.1
3,081,643	+				-1.6
3,081,643	+				+1.5
3,081,649	-				-0.7
3,081,651	-				+0.3
3,081,661	+				-1.1
3,081,661	+				+0.4
3,081,661	+				+0.2
3,081,662	-				-1.9
3,081,666	+				-0.2
3,081,669	-				+0.5
3,081,669	-				+1.0
3,081,669	-				-2.2
3,081,754	-				-1.4
3,081,759	+				-1.3
3,081,776	+				+0.6
3,081,784	-				+0.7
3,081,805	-				+1.3
3,081,809	-				+0.5
3,081,812	+				+1.1
3,081,817	+				+0.1
3,081,820	-				-0.1
3,081,831	+		GFF3015	0.10	+0.7
3,081,834	-		GFF3015	0.10	-1.5
3,081,836	+		GFF3015	0.11	-1.3
3,081,836	+		GFF3015	0.11	-0.4
3,081,841	+		GFF3015	0.11	+1.4
3,081,845	+		GFF3015	0.11	-0.3
3,081,845	+		GFF3015	0.11	-0.1
3,081,849	+		GFF3015	0.12	-0.8
3,081,849	-		GFF3015	0.12	+0.0
3,081,850	+		GFF3015	0.12	-1.6
3,081,853	-		GFF3015	0.12	-1.6
3,081,884	+		GFF3015	0.15	+0.5
3,081,916	+		GFF3015	0.18	+1.4
3,081,923	-		GFF3015	0.18	-0.7
3,081,973	+		GFF3015	0.23	-0.6
3,081,973	+		GFF3015	0.23	-1.4
3,081,975	+		GFF3015	0.23	+0.5
3,081,981	-		GFF3015	0.23	+0.1
3,081,999	+		GFF3015	0.25	+0.7
3,082,006	+		GFF3015	0.26	-0.1
3,082,011	+		GFF3015	0.26	-0.4
3,082,011	+		GFF3015	0.26	-0.3
3,082,017	-		GFF3015	0.27	+0.0
3,082,038	-		GFF3015	0.29	-0.7
3,082,054	-		GFF3015	0.30	-0.4
3,082,070	-		GFF3015	0.31	+0.2
3,082,093	-		GFF3015	0.33	-2.5
3,082,093	-		GFF3015	0.33	+1.8
3,082,095	+		GFF3015	0.34	-2.2
3,082,100	+		GFF3015	0.34	-0.5
3,082,108	-		GFF3015	0.35	+0.3
3,082,118	-		GFF3015	0.36	+1.3
3,082,118	-		GFF3015	0.36	-1.0
3,082,173	-		GFF3015	0.41	+0.3
3,082,180	+		GFF3015	0.41	+1.0
3,082,180	+		GFF3015	0.41	-2.0
3,082,180	+		GFF3015	0.41	-0.5
3,082,180	+		GFF3015	0.41	-1.8
3,082,188	-		GFF3015	0.42	-2.3
3,082,191	+		GFF3015	0.42	-0.4
3,082,191	+		GFF3015	0.42	+1.0
3,082,200	-		GFF3015	0.43	-1.4
3,082,246	+		GFF3015	0.47	-0.3
3,082,246	+		GFF3015	0.47	+2.0
3,082,246	+		GFF3015	0.47	-0.2
3,082,246	+		GFF3015	0.47	+0.8
3,082,254	-		GFF3015	0.48	+0.2
3,082,254	-		GFF3015	0.48	-2.0
3,082,254	-		GFF3015	0.48	-0.5
3,082,280	+		GFF3015	0.50	+0.3
3,082,280	+		GFF3015	0.50	+0.5
3,082,282	+		GFF3015	0.50	-1.3
3,082,282	+		GFF3015	0.50	-1.4
3,082,288	-		GFF3015	0.51	+0.2
3,082,290	-		GFF3015	0.51	+0.9
3,082,295	+		GFF3015	0.51	-1.3
3,082,303	-		GFF3015	0.52	-1.2
3,082,303	-		GFF3015	0.52	-1.1
3,082,308	-		GFF3015	0.53	-0.4
3,082,318	+		GFF3015	0.53	+1.5
3,082,323	+		GFF3015	0.54	-1.1
3,082,323	+		GFF3015	0.54	+0.5
3,082,323	+		GFF3015	0.54	-0.5
3,082,336	-		GFF3015	0.55	-0.2
3,082,336	-		GFF3015	0.55	-0.5
3,082,336	-		GFF3015	0.55	+0.2
3,082,383	-		GFF3015	0.59	-2.0
3,082,395	+		GFF3015	0.60	+0.7
3,082,403	-		GFF3015	0.61	-1.1
3,082,479	-		GFF3015	0.68	-0.5
3,082,483	+		GFF3015	0.68	-1.1
3,082,483	+		GFF3015	0.68	-0.2
3,082,483	+		GFF3015	0.68	-0.5
3,082,483	+		GFF3015	0.68	+0.3
3,082,483	+		GFF3015	0.68	-0.2
3,082,483	+		GFF3015	0.68	-0.4
3,082,483	+		GFF3015	0.68	-0.1
3,082,483	+		GFF3015	0.68	+1.0
3,082,483	+		GFF3015	0.68	+0.5
3,082,483	+		GFF3015	0.68	+0.1
3,082,483	+		GFF3015	0.68	-0.1
3,082,483	+		GFF3015	0.68	-0.6
3,082,483	+		GFF3015	0.68	-1.1
3,082,483	+		GFF3015	0.68	+0.1
3,082,483	+		GFF3015	0.68	+0.4
3,082,483	+		GFF3015	0.68	-0.8
3,082,483	+		GFF3015	0.68	-0.5
3,082,483	+		GFF3015	0.68	-1.4
3,082,483	+		GFF3015	0.68	-1.5
3,082,483	+		GFF3015	0.68	+0.3
3,082,483	+		GFF3015	0.68	-2.3
3,082,483	+		GFF3015	0.68	+0.1
3,082,483	+		GFF3015	0.68	+0.6
3,082,483	+		GFF3015	0.68	-0.4
3,082,483	+		GFF3015	0.68	+0.1
3,082,483	+		GFF3015	0.68	-0.5
3,082,483	+		GFF3015	0.68	-1.2
3,082,483	+		GFF3015	0.68	+0.2
3,082,491	-		GFF3015	0.69	-0.7
3,082,491	-		GFF3015	0.69	-0.9
3,082,491	-		GFF3015	0.69	-0.5
3,082,491	-		GFF3015	0.69	-1.4
3,082,491	-		GFF3015	0.69	+0.4
3,082,491	-		GFF3015	0.69	-1.2
3,082,491	-		GFF3015	0.69	-0.7
3,082,491	-		GFF3015	0.69	-0.3
3,082,491	-		GFF3015	0.69	+0.6
3,082,491	-		GFF3015	0.69	+1.4
3,082,491	-		GFF3015	0.69	-0.1
3,082,491	-		GFF3015	0.69	-0.9
3,082,491	-		GFF3015	0.69	+0.3
3,082,491	-		GFF3015	0.69	-1.2
3,082,491	-		GFF3015	0.69	+1.6
3,082,491	-		GFF3015	0.69	-1.0
3,082,497	+		GFF3015	0.69	-1.5
3,082,501	-		GFF3015	0.70	+1.1
3,082,501	-		GFF3015	0.70	+0.7
3,082,505	-		GFF3015	0.70	-0.6
3,082,512	+		GFF3015	0.71	+1.2
3,082,527	+		GFF3015	0.72	-0.7
3,082,535	-		GFF3015	0.73	-0.3
3,082,535	-		GFF3015	0.73	+0.5
3,082,536	-		GFF3015	0.73	-1.2
3,082,540	+		GFF3015	0.73	-0.9
3,082,548	-		GFF3015	0.74	-1.7
3,082,550	+		GFF3015	0.74	+0.0
3,082,550	-		GFF3015	0.74	-0.1
3,082,605	-		GFF3015	0.79	+0.5
3,082,607	+		GFF3015	0.79	-0.7
3,082,607	+		GFF3015	0.79	-0.5
3,082,607	+		GFF3015	0.79	-0.3
3,082,607	+		GFF3015	0.79	-1.1
3,082,607	+		GFF3015	0.79	+0.8
3,082,614	+		GFF3015	0.80	-0.6
3,082,614	-		GFF3015	0.80	-1.0
3,082,615	-		GFF3015	0.80	-0.9
3,082,615	-		GFF3015	0.80	+0.7
3,082,615	-		GFF3015	0.80	-0.5
3,082,615	-		GFF3015	0.80	+2.1
3,082,615	-		GFF3015	0.80	+0.1
3,082,615	-		GFF3015	0.80	+0.1
3,082,615	-		GFF3015	0.80	+1.3
3,082,615	-		GFF3015	0.80	-1.1
3,082,615	-		GFF3015	0.80	-1.2
3,082,615	-		GFF3015	0.80	+0.8
3,082,616	-		GFF3015	0.80	-1.0
3,082,622	-		GFF3015	0.80	-1.0
3,082,626	-		GFF3015	0.81	-0.2
3,082,630	-		GFF3015	0.81	-0.9
3,082,658	-		GFF3015	0.84	+0.5
3,082,658	-		GFF3015	0.84	-0.5
3,082,667	-		GFF3015	0.84	-0.5
3,082,676	+		GFF3015	0.85	+1.0
3,082,693	+		GFF3015	0.87	-1.6
3,082,693	-		GFF3015	0.87	-0.6
3,082,705	+		GFF3015	0.88	+0.1
3,082,705	+		GFF3015	0.88	-1.4
3,082,713	-		GFF3015	0.89	+0.4
3,082,720	+		GFF3015	0.89	+1.0
3,082,720	+		GFF3015	0.89	+0.7
3,082,720	+		GFF3015	0.89	-0.6
3,082,720	+		GFF3015	0.89	-1.4
3,082,720	+		GFF3015	0.89	-0.3
3,082,720	+		GFF3015	0.89	-0.2
3,082,720	+		GFF3015	0.89	+0.3
3,082,720	+		GFF3015	0.89	-0.3
3,082,720	+		GFF3015	0.89	-0.0
3,082,720	+		GFF3015	0.89	+0.9
3,082,728	-		GFF3015	0.90	-0.2
3,082,728	-		GFF3015	0.90	+0.6
3,082,728	-		GFF3015	0.90	+0.3
3,082,728	-		GFF3015	0.90	+0.3
3,082,728	-		GFF3015	0.90	+1.0
3,082,728	-		GFF3015	0.90	+1.6
3,082,728	-		GFF3015	0.90	-0.6
3,082,741	-				-1.2
3,082,759	-				+0.1
3,082,759	-				-0.8
3,082,763	+				-2.2
3,082,763	+				-0.3
3,082,771	-				+0.8
3,082,771	-				-0.3
3,082,771	-				-1.2
3,082,775	+				-1.8
3,082,776	-				-2.6
3,082,816	+				+0.6
3,082,816	+				-2.1
3,082,816	+				+1.3
3,082,824	-				-0.2
3,082,824	-				+0.1
3,082,826	+				-0.2
3,082,826	+				+0.5
3,082,826	+				-0.1
3,082,826	+				+1.1
3,082,826	+				+0.3
3,082,826	+				-0.2
3,082,826	+				-1.6
3,082,826	+				-0.6
3,082,826	+				-2.0
3,082,826	+				-0.3
3,082,834	-				+0.5
3,082,834	-				+0.0
3,082,834	-				-1.4
3,082,834	-				+2.7
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3,082,844	-				+0.9
3,082,844	-				-1.7
3,082,856	+				+1.4
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3,082,856	+				-3.0
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3,082,856	+				+0.3
3,082,856	+				-1.6
3,082,856	+				-0.4
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3,082,856	+				+0.6
3,082,856	+				+1.7
3,082,856	+				-0.9
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3,082,864	-				+0.3
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3,082,864	-				+0.2
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3,082,869	-				+0.1
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3,083,378	-		GFF3016	0.61	-1.5
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3,083,411	+		GFF3016	0.65	-0.1
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3,083,453	+		GFF3016	0.70	-1.4
3,083,453	+		GFF3016	0.70	+1.2
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3,083,485	+		GFF3016	0.73	+0.3
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3,083,498	-		GFF3016	0.75	-1.2
3,083,498	-		GFF3016	0.75	-0.3
3,083,499	+		GFF3016	0.75	-2.1
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3,083,504	+		GFF3016	0.75	-1.5
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3,083,504	+		GFF3016	0.75	-1.5
3,083,504	+		GFF3016	0.75	-1.1
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3,083,554	+		GFF3016	0.81	+0.3
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3,083,633	-				+1.6
3,083,639	+				-2.4
3,083,639	+				+0.8
3,083,639	+				-0.6
3,083,639	+				-0.3
3,083,649	+				-0.9
3,083,658	+				+0.2
3,083,667	+				-0.2
3,083,670	-				-0.3
3,083,675	-				+0.1
3,083,697	-				-1.1
3,083,720	-				+0.2
3,083,725	+				-0.2
3,083,738	+				-0.5
3,083,738	+				+0.2
3,083,738	+				-1.6
3,083,738	+				-0.3
3,083,738	+				-0.1
3,083,740	+				-1.9
3,083,740	+				-0.1
3,083,740	+				-1.8
3,083,746	+				-1.2
3,083,746	-				+0.0
3,083,746	-				-1.0
3,083,746	-				+1.0
3,083,746	-				-0.4
3,083,746	-				-1.1
3,083,748	-				+0.3
3,083,754	-				-1.0
3,083,765	+				+0.5
3,083,765	+				-0.3
3,083,765	+				-1.2
3,083,765	+				-0.8
3,083,765	+				-0.7
3,083,775	+				-2.8
3,083,775	+				-1.1
3,083,775	+				-0.3
3,083,783	-				+0.8
3,083,793	-				+0.3
3,083,793	-				+0.6
3,083,794	+				+0.1
3,083,806	+				-0.4
3,083,840	+				-0.6