Strain Fitness in Sphingobium sp. HT1-2 around GFF2972

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,025,796	+				+1.7
3,025,805	+				-0.7
3,025,816	-				-1.0
3,025,827	-				-0.4
3,025,833	-				-1.4
3,025,833	-				-0.2
3,025,833	-				+0.1
3,025,838	+				+0.3
3,025,854	+				-0.1
3,025,860	+				-0.3
3,025,862	-				+1.0
3,025,862	-				-0.2
3,025,876	+				-1.5
3,025,885	+				-0.1
3,025,900	+				+1.3
3,025,908	-				+0.5
3,025,908	-				-0.1
3,025,921	+				+0.4
3,025,939	-				+0.1
3,025,941	+				+0.3
3,025,941	+				-0.9
3,025,949	-				-1.4
3,025,949	-				+0.0
3,025,949	-				+0.8
3,025,951	+		GFF2971	0.10	-0.2
3,025,956	+		GFF2971	0.11	-0.7
3,025,961	+		GFF2971	0.11	-0.3
3,025,969	-		GFF2971	0.12	-0.4
3,025,969	-		GFF2971	0.12	-0.6
3,026,028	+		GFF2971	0.20	+0.7
3,026,057	+		GFF2971	0.23	+1.3
3,026,076	+		GFF2971	0.26	-0.7
3,026,077	+		GFF2971	0.26	-1.7
3,026,077	+		GFF2971	0.26	-0.4
3,026,084	-		GFF2971	0.27	+0.7
3,026,085	-		GFF2971	0.27	+0.1
3,026,085	-		GFF2971	0.27	+0.7
3,026,085	-		GFF2971	0.27	-1.4
3,026,110	+		GFF2971	0.30	-0.4
3,026,110	+		GFF2971	0.30	-0.3
3,026,118	-		GFF2971	0.31	+1.8
3,026,118	-		GFF2971	0.31	+0.1
3,026,177	+		GFF2971	0.39	-0.8
3,026,200	-		GFF2971	0.42	+0.8
3,026,211	+		GFF2971	0.43	+0.3
3,026,211	+		GFF2971	0.43	-2.0
3,026,219	-		GFF2971	0.44	+0.4
3,026,236	+		GFF2971	0.46	+0.5
3,026,240	+		GFF2971	0.47	-0.2
3,026,240	-		GFF2971	0.47	-0.1
3,026,248	-		GFF2971	0.48	-0.9
3,026,248	-		GFF2971	0.48	+0.4
3,026,248	-		GFF2971	0.48	-1.1
3,026,254	-		GFF2971	0.48	-2.1
3,026,255	-		GFF2971	0.49	+0.3
3,026,255	-		GFF2971	0.49	+1.9
3,026,265	+		GFF2971	0.50	-0.6
3,026,273	-		GFF2971	0.51	-2.3
3,026,286	+		GFF2971	0.52	+0.8
3,026,286	+		GFF2971	0.52	+1.3
3,026,294	-		GFF2971	0.53	-1.5
3,026,305	+		GFF2971	0.55	+0.2
3,026,305	+		GFF2971	0.55	+0.1
3,026,305	+		GFF2971	0.55	-0.5
3,026,313	-		GFF2971	0.56	+0.1
3,026,315	-		GFF2971	0.56	+0.8
3,026,333	+		GFF2971	0.58	+1.3
3,026,341	-		GFF2971	0.59	-2.1
3,026,341	-		GFF2971	0.59	-0.4
3,026,341	-		GFF2971	0.59	-0.4
3,026,341	-		GFF2971	0.59	-0.1
3,026,344	+		GFF2971	0.60	-1.2
3,026,353	+		GFF2971	0.61	-2.4
3,026,354	+		GFF2971	0.61	+0.3
3,026,354	+		GFF2971	0.61	-0.7
3,026,361	-		GFF2971	0.62	-0.5
3,026,362	-		GFF2971	0.62	+0.8
3,026,362	-		GFF2971	0.62	-0.7
3,026,397	+		GFF2971	0.67	+1.2
3,026,405	-		GFF2971	0.68	-1.6
3,026,405	-		GFF2971	0.68	-2.1
3,026,405	-		GFF2971	0.68	-1.3
3,026,405	-		GFF2971	0.68	-1.6
3,026,454	-		GFF2971	0.74	-1.4
3,026,462	-		GFF2971	0.75	-1.2
3,026,467	-		GFF2971	0.75	+0.1
3,026,467	-		GFF2971	0.75	+0.6
3,026,503	+		GFF2971	0.80	+1.1
3,026,513	+		GFF2971	0.81	+0.9
3,026,513	+		GFF2971	0.81	-0.9
3,026,515	+		GFF2971	0.81	-0.1
3,026,518	+		GFF2971	0.82	-0.5
3,026,519	+		GFF2971	0.82	-0.2
3,026,523	+		GFF2971	0.83	-0.9
3,026,523	+		GFF2971	0.83	-0.5
3,026,523	+		GFF2971	0.83	-0.2
3,026,523	+		GFF2971	0.83	-1.7
3,026,526	-		GFF2971	0.83	-2.4
3,026,529	+		GFF2971	0.83	+0.5
3,026,529	+		GFF2971	0.83	-0.5
3,026,529	+		GFF2971	0.83	+1.0
3,026,529	+		GFF2971	0.83	+0.6
3,026,531	-		GFF2971	0.84	-0.5
3,026,531	-		GFF2971	0.84	+0.3
3,026,531	-		GFF2971	0.84	+0.5
3,026,537	-		GFF2971	0.84	-0.0
3,026,537	-		GFF2971	0.84	-0.4
3,026,537	-		GFF2971	0.84	+0.3
3,026,537	-		GFF2971	0.84	+1.5
3,026,537	-		GFF2971	0.84	-0.1
3,026,552	-		GFF2971	0.86	-0.2
3,026,558	+		GFF2971	0.87	-2.1
3,026,558	+		GFF2971	0.87	+0.6
3,026,558	-		GFF2971	0.87	+0.7
3,026,559	-		GFF2971	0.87	-0.3
3,026,563	+		GFF2971	0.88	-1.1
3,026,563	+		GFF2971	0.88	-2.7
3,026,563	+		GFF2971	0.88	-0.6
3,026,563	+		GFF2971	0.88	-1.2
3,026,563	+		GFF2971	0.88	+0.6
3,026,563	+		GFF2971	0.88	+0.1
3,026,563	+		GFF2971	0.88	-0.4
3,026,563	+		GFF2971	0.88	-0.2
3,026,563	+		GFF2971	0.88	+0.2
3,026,563	+		GFF2971	0.88	-0.6
3,026,563	+		GFF2971	0.88	+0.5
3,026,563	+		GFF2971	0.88	-0.3
3,026,563	+		GFF2971	0.88	-1.4
3,026,563	+		GFF2971	0.88	-0.5
3,026,563	+		GFF2971	0.88	+2.1
3,026,566	-		GFF2971	0.88	-1.5
3,026,571	-		GFF2971	0.89	+1.4
3,026,571	-		GFF2971	0.89	-2.9
3,026,571	-		GFF2971	0.89	-0.4
3,026,571	-		GFF2971	0.89	+0.8
3,026,571	-		GFF2971	0.89	-0.2
3,026,571	-		GFF2971	0.89	-1.9
3,026,571	-		GFF2971	0.89	-1.2
3,026,571	-		GFF2971	0.89	+0.7
3,026,571	-		GFF2971	0.89	+0.9
3,026,590	+				-1.2
3,026,593	-				-0.4
3,026,594	+				-0.2
3,026,596	+				+0.5
3,026,597	-				-0.6
3,026,597	-				+0.1
3,026,598	-				+1.1
3,026,598	-				+0.0
3,026,598	-				-0.4
3,026,619	+				-0.5
3,026,627	-				-0.6
3,026,630	+				-0.1
3,026,630	+				-1.6
3,026,642	+				+0.9
3,026,650	-				-0.1
3,026,655	-				+0.8
3,026,656	+				-1.5
3,026,657	+				+0.4
3,026,665	+				+0.3
3,026,673	-				-0.3
3,026,675	+				-1.7
3,026,675	+				-2.0
3,026,675	+				-1.5
3,026,675	+				+0.3
3,026,675	+				-1.4
3,026,675	+				+1.0
3,026,683	-				+0.5
3,026,683	-				-2.5
3,026,702	+				+0.3
3,026,730	-				-1.4
3,026,791	+				-0.7
3,026,791	+				-0.0
3,026,794	-				+0.6
3,026,799	-				+0.0
3,026,799	-				+0.3
3,026,836	+		GFF2972	0.27	-0.5
3,026,840	+		GFF2972	0.29	-0.8
3,026,841	+		GFF2972	0.30	-1.2
3,026,841	+		GFF2972	0.30	+0.6
3,026,841	+		GFF2972	0.30	+0.1
3,026,841	+		GFF2972	0.30	+0.5
3,026,841	+		GFF2972	0.30	-0.3
3,026,841	+		GFF2972	0.30	+0.7
3,026,841	+		GFF2972	0.30	+0.3
3,026,849	-		GFF2972	0.35	-1.1
3,026,849	-		GFF2972	0.35	-0.9
3,026,849	-		GFF2972	0.35	-1.5
3,026,849	-		GFF2972	0.35	-0.9
3,026,849	-		GFF2972	0.35	-1.3
3,026,849	-		GFF2972	0.35	-1.8
3,026,849	-		GFF2972	0.35	-0.4
3,026,849	-		GFF2972	0.35	+0.1
3,026,849	-		GFF2972	0.35	-0.3
3,026,851	+		GFF2972	0.36	-0.8
3,026,851	+		GFF2972	0.36	+1.1
3,026,851	+		GFF2972	0.36	+1.7
3,026,851	+		GFF2972	0.36	-0.6
3,026,858	+		GFF2972	0.40	+0.0
3,026,859	-		GFF2972	0.41	+0.7
3,026,859	-		GFF2972	0.41	-1.0
3,026,865	+		GFF2972	0.44	-2.1
3,026,865	+		GFF2972	0.44	+0.6
3,026,873	-		GFF2972	0.49	+0.0
3,026,876	+		GFF2972	0.51	-1.5
3,026,882	+		GFF2972	0.55	-0.5
3,026,884	-		GFF2972	0.56	-2.6
3,026,891	+		GFF2972	0.60	-1.1
3,026,905	+		GFF2972	0.68	+0.1
3,026,907	+		GFF2972	0.70	+1.4
3,026,951	+				-0.8
3,027,149	+				-0.2
3,027,152	-				+0.8
3,027,157	-				-0.2
3,027,159	+				+0.6
3,027,159	+				+0.3
3,027,159	+				+1.1
3,027,159	+				+0.7
3,027,164	+				-0.6
3,027,167	-				+0.0
3,027,167	-				-0.0
3,027,167	-				-0.4
3,027,171	+				-0.7
3,027,192	+				+0.7
3,027,199	+				+0.6
3,027,200	-				-0.5
3,027,207	+				-2.4
3,027,224	-				-0.9
3,027,227	-				+1.0
3,027,251	+				-0.7
3,027,253	+				-0.9
3,027,253	+				+0.1
3,027,257	+				-1.6
3,027,446	-		GFF2974	0.39	-1.3
3,027,450	-		GFF2974	0.39	-0.9
3,027,808	+				-0.1
3,027,826	-				-1.3
3,027,833	-				-0.2
3,027,929	+				+0.1