Strain Fitness in Sphingobium sp. HT1-2 around GFF2829

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,872,407	+		GFF2827	0.79	+0.4
2,872,442	+		GFF2827	0.81	+0.4
2,872,446	+		GFF2827	0.82	+0.8
2,872,459	-		GFF2827	0.82	-0.2
2,872,491	-		GFF2827	0.84	-0.8
2,872,541	+		GFF2827	0.87	+0.1
2,872,541	+		GFF2827	0.87	-0.4
2,872,546	+		GFF2827	0.88	+0.1
2,872,549	-		GFF2827	0.88	-1.3
2,872,554	-		GFF2827	0.88	-1.0
2,872,566	-		GFF2827	0.89	-0.4
2,872,574	+		GFF2827	0.89	+0.6
2,872,582	-		GFF2827	0.90	-1.4
2,872,603	-				+1.5
2,872,620	+				-1.3
2,872,622	+				-0.9
2,872,634	+				-0.7
2,872,639	+				+0.0
2,872,644	+				+0.7
2,872,652	-				-0.9
2,872,652	-				+1.2
2,872,655	-				+0.4
2,872,655	-				-0.5
2,872,675	+				-1.6
2,872,684	-				-0.6
2,872,702	-				-0.0
2,872,741	-				-0.3
2,872,741	-				-0.8
2,872,751	-				+0.6
2,872,756	-				-2.0
2,872,761	-				-0.7
2,872,761	-				-0.1
2,872,773	+				-0.4
2,872,828	-				-1.5
2,872,901	-		GFF2828	0.24	-1.0
2,872,904	+		GFF2828	0.24	-1.8
2,872,905	+		GFF2828	0.24	-0.4
2,872,912	-		GFF2828	0.26	-1.8
2,873,033	+		GFF2828	0.52	-0.3
2,873,033	+		GFF2828	0.52	+1.0
2,873,041	-		GFF2828	0.54	-0.5
2,873,045	+		GFF2828	0.55	+0.5
2,873,045	+		GFF2828	0.55	-0.8
2,873,050	+		GFF2828	0.56	-0.8
2,873,050	+		GFF2828	0.56	+0.3
2,873,053	-		GFF2828	0.56	+2.1
2,873,058	-		GFF2828	0.58	-1.2
2,873,077	-		GFF2828	0.62	-1.4
2,873,077	-		GFF2828	0.62	+0.3
2,873,077	-		GFF2828	0.62	+0.1
2,873,114	+		GFF2828	0.70	+0.6
2,873,154	-		GFF2828	0.78	+1.7
2,873,159	+		GFF2828	0.79	-1.8
2,873,159	+		GFF2828	0.79	+0.5
2,873,159	+		GFF2828	0.79	-1.9
2,873,160	+		GFF2828	0.80	-1.4
2,873,160	+		GFF2828	0.80	-1.6
2,873,160	+		GFF2828	0.80	-1.0
2,873,160	+		GFF2828	0.80	+0.3
2,873,167	-		GFF2828	0.81	-0.5
2,873,168	-		GFF2828	0.81	+1.3
2,873,168	-		GFF2828	0.81	-1.5
2,873,188	+		GFF2828	0.86	+0.5
2,873,287	-				-0.3
2,873,374	+				-0.6
2,873,374	+				+0.4
2,873,396	+				-2.5
2,873,401	+				-0.0
2,873,416	+				-0.9
2,873,418	+				+0.2
2,873,420	+				+0.8
2,873,452	-				-0.4
2,873,473	-				+0.2
2,873,475	-				-0.8
2,873,475	-				+0.1
2,873,475	-				+2.4
2,873,519	+		GFF2829	0.13	+0.9
2,873,534	+		GFF2829	0.15	+0.7
2,873,572	-		GFF2829	0.18	+0.5
2,873,572	-		GFF2829	0.18	-0.4
2,873,615	-		GFF2829	0.23	-1.0
2,873,618	+		GFF2829	0.23	-1.6
2,873,618	+		GFF2829	0.23	+0.9
2,873,626	-		GFF2829	0.24	-0.3
2,873,626	-		GFF2829	0.24	-1.2
2,873,626	-		GFF2829	0.24	-0.1
2,873,649	+		GFF2829	0.26	-1.9
2,873,659	+		GFF2829	0.27	+0.6
2,873,659	+		GFF2829	0.27	-0.2
2,873,659	+		GFF2829	0.27	-0.1
2,873,659	+		GFF2829	0.27	-0.3
2,873,659	+		GFF2829	0.27	-1.4
2,873,667	-		GFF2829	0.27	-0.6
2,873,667	-		GFF2829	0.27	-0.2
2,873,667	-		GFF2829	0.27	-0.4
2,873,687	+		GFF2829	0.29	+0.3
2,873,700	+		GFF2829	0.31	-0.6
2,873,705	-		GFF2829	0.31	-2.4
2,873,708	-		GFF2829	0.31	+0.4
2,873,717	-		GFF2829	0.32	-0.2
2,873,728	-		GFF2829	0.33	-1.0
2,873,805	+		GFF2829	0.41	+0.4
2,873,818	+		GFF2829	0.42	+0.8
2,873,823	+		GFF2829	0.42	+1.4
2,873,826	-		GFF2829	0.43	-0.4
2,873,826	-		GFF2829	0.43	-0.3
2,873,826	-		GFF2829	0.43	+0.2
2,873,891	+		GFF2829	0.49	-1.1
2,873,896	+		GFF2829	0.49	-1.1
2,873,903	+		GFF2829	0.50	-0.7
2,873,906	+		GFF2829	0.50	+0.5
2,873,933	+		GFF2829	0.53	-0.1
2,873,951	+		GFF2829	0.54	-0.3
2,873,998	+		GFF2829	0.59	+0.6
2,874,072	+		GFF2829	0.66	+0.2
2,874,080	-		GFF2829	0.67	+1.6
2,874,114	+		GFF2829	0.70	+0.3
2,874,179	+		GFF2829	0.76	-2.0
2,874,193	-		GFF2829	0.77	-0.9
2,874,216	-		GFF2829	0.80	-0.4
2,874,250	-		GFF2829	0.83	-1.5
2,874,250	-		GFF2829	0.83	-0.1
2,874,272	+		GFF2829	0.85	-2.0
2,874,286	-		GFF2829	0.86	-0.1
2,874,308	-		GFF2829	0.88	+0.4
2,874,327	+				+1.4
2,874,333	+				+0.6
2,874,337	+				-1.1
2,874,363	+				-0.1
2,874,363	+				+0.1
2,874,388	+				-0.4
2,874,448	-				-0.5
2,874,462	-				+1.1
2,874,463	+				+0.4
2,874,466	-				+0.2
2,874,520	+				-0.5
2,874,520	+				+1.4
2,874,549	+				+0.2
2,874,604	+				+0.2
2,874,604	+				+1.8
2,874,604	+				+0.8
2,874,604	+				-1.2
2,874,604	+				+0.6
2,874,614	+		GFF2830	0.10	+0.1
2,874,614	+		GFF2830	0.10	+0.3
2,874,617	-		GFF2830	0.11	-1.5
2,874,622	-		GFF2830	0.11	-1.5
2,874,622	-		GFF2830	0.11	+0.1
2,874,624	-		GFF2830	0.11	-2.1
2,874,655	-		GFF2830	0.13	+0.7
2,874,664	+		GFF2830	0.14	-0.0
2,874,675	+		GFF2830	0.14	-0.9
2,874,677	-		GFF2830	0.15	+0.4
2,874,677	-		GFF2830	0.15	-0.8
2,874,682	+		GFF2830	0.15	+0.5
2,874,683	-		GFF2830	0.15	+0.7
2,874,688	-		GFF2830	0.15	-0.1
2,874,690	-		GFF2830	0.15	-0.5
2,874,690	-		GFF2830	0.15	-0.4
2,874,728	+		GFF2830	0.18	-0.6
2,874,729	-		GFF2830	0.18	+2.6
2,874,736	-		GFF2830	0.18	-1.5
2,874,739	-		GFF2830	0.19	-0.8
2,874,743	+		GFF2830	0.19	+0.5
2,874,748	+		GFF2830	0.19	-1.5
2,874,751	-		GFF2830	0.19	-0.2
2,874,751	-		GFF2830	0.19	-0.0
2,874,751	-		GFF2830	0.19	+1.1
2,874,751	-		GFF2830	0.19	-1.0
2,874,751	-		GFF2830	0.19	+0.6
2,874,769	-		GFF2830	0.21	+0.5
2,874,786	-		GFF2830	0.22	-2.2
2,874,788	+		GFF2830	0.22	-1.9
2,874,796	+		GFF2830	0.22	-0.2
2,874,796	+		GFF2830	0.22	+1.5
2,874,796	+		GFF2830	0.22	-1.2
2,874,796	+		GFF2830	0.22	-0.0
2,874,796	+		GFF2830	0.22	+0.2
2,874,796	+		GFF2830	0.22	+0.1
2,874,796	+		GFF2830	0.22	+0.1
2,874,801	+		GFF2830	0.23	+0.9
2,874,803	-		GFF2830	0.23	-0.2
2,874,804	-		GFF2830	0.23	+0.2
2,874,804	-		GFF2830	0.23	+0.7
2,874,870	-		GFF2830	0.27	-0.3
2,874,921	+		GFF2830	0.31	-2.2
2,874,921	+		GFF2830	0.31	+0.2
2,874,967	+		GFF2830	0.34	-1.4
2,874,975	-		GFF2830	0.34	-1.0
2,874,975	-		GFF2830	0.34	+2.3
2,874,975	-		GFF2830	0.34	-1.2
2,874,975	-		GFF2830	0.34	-1.4
2,875,006	+		GFF2830	0.36	+0.3
2,875,007	-		GFF2830	0.36	-1.4
2,875,013	-		GFF2830	0.37	-1.9
2,875,061	+		GFF2830	0.40	-1.0
2,875,061	+		GFF2830	0.40	+1.4
2,875,061	+		GFF2830	0.40	+0.5
2,875,069	-		GFF2830	0.40	-0.3
2,875,084	+		GFF2830	0.41	-1.0
2,875,084	+		GFF2830	0.41	-0.5
2,875,128	+		GFF2830	0.44	+0.2
2,875,136	-		GFF2830	0.45	+0.2
2,875,141	-		GFF2830	0.45	+0.5
2,875,173	-		GFF2830	0.47	+1.4
2,875,177	+		GFF2830	0.48	-0.0
2,875,182	+		GFF2830	0.48	+1.0
2,875,182	+		GFF2830	0.48	+0.2
2,875,185	-		GFF2830	0.48	+0.6
2,875,185	-		GFF2830	0.48	-0.8
2,875,190	-		GFF2830	0.48	-0.8
2,875,227	-		GFF2830	0.51	+0.4
2,875,227	-		GFF2830	0.51	-2.0
2,875,256	+		GFF2830	0.53	-0.6
2,875,273	+		GFF2830	0.54	-1.5
2,875,273	+		GFF2830	0.54	-0.9
2,875,273	+		GFF2830	0.54	+0.1
2,875,273	+		GFF2830	0.54	-0.1
2,875,273	+		GFF2830	0.54	-0.5
2,875,278	+		GFF2830	0.54	+1.5
2,875,278	+		GFF2830	0.54	+0.3
2,875,281	-		GFF2830	0.54	-1.3
2,875,283	+		GFF2830	0.55	+0.1
2,875,283	+		GFF2830	0.55	+0.7
2,875,286	-		GFF2830	0.55	-0.9
2,875,286	-		GFF2830	0.55	+0.9
2,875,286	-		GFF2830	0.55	-0.1
2,875,286	-		GFF2830	0.55	+0.5
2,875,291	-		GFF2830	0.55	-1.9
2,875,328	+		GFF2830	0.58	-0.2
2,875,329	-		GFF2830	0.58	+0.4
2,875,333	+		GFF2830	0.58	+0.2
2,875,333	+		GFF2830	0.58	-1.8
2,875,333	+		GFF2830	0.58	-0.3
2,875,333	+		GFF2830	0.58	-1.2
2,875,333	+		GFF2830	0.58	+1.2
2,875,333	+		GFF2830	0.58	-0.5
2,875,333	+		GFF2830	0.58	-0.8
2,875,333	+		GFF2830	0.58	-1.0
2,875,333	+		GFF2830	0.58	+0.1
2,875,341	-		GFF2830	0.58	-0.8
2,875,341	-		GFF2830	0.58	-0.4
2,875,341	-		GFF2830	0.58	+1.4
2,875,341	-		GFF2830	0.58	+0.9
2,875,341	-		GFF2830	0.58	-1.2
2,875,341	-		GFF2830	0.58	-0.6
2,875,341	-		GFF2830	0.58	+0.3
2,875,341	-		GFF2830	0.58	-0.3
2,875,341	-		GFF2830	0.58	-0.5
2,875,341	-		GFF2830	0.58	-0.4
2,875,341	-		GFF2830	0.58	-1.4
2,875,341	-		GFF2830	0.58	-0.4
2,875,341	-		GFF2830	0.58	+0.4
2,875,341	-		GFF2830	0.58	-0.6
2,875,341	-		GFF2830	0.58	-0.3
2,875,341	-		GFF2830	0.58	+0.5
2,875,341	-		GFF2830	0.58	+2.1
2,875,341	-		GFF2830	0.58	-0.3
2,875,341	-		GFF2830	0.58	-1.4
2,875,341	-		GFF2830	0.58	+2.0
2,875,341	-		GFF2830	0.58	-0.1
2,875,341	-		GFF2830	0.58	+0.3
2,875,341	-		GFF2830	0.58	+1.1
2,875,345	+		GFF2830	0.59	+0.5
2,875,345	+		GFF2830	0.59	+0.1
2,875,345	+		GFF2830	0.59	+0.4
2,875,345	+		GFF2830	0.59	+0.5
2,875,345	+		GFF2830	0.59	+0.4
2,875,350	+		GFF2830	0.59	+0.0
2,875,353	-		GFF2830	0.59	-0.2
2,875,353	-		GFF2830	0.59	+1.2
2,875,353	-		GFF2830	0.59	-0.2
2,875,353	-		GFF2830	0.59	+1.0
2,875,353	-		GFF2830	0.59	+0.1
2,875,353	-		GFF2830	0.59	-0.2
2,875,353	-		GFF2830	0.59	-0.6
2,875,370	+		GFF2830	0.60	+0.9
2,875,400	-		GFF2830	0.62	-1.9
2,875,430	-		GFF2830	0.64	+2.0