Strain Fitness in Sphingobium sp. HT1-2 around GFF2752

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,777,589	-				+1.6
2,777,589	-				+0.1
2,777,591	+				-2.0
2,777,591	+				-0.5
2,777,591	+				-0.9
2,777,591	+				-1.4
2,777,599	-				+0.0
2,777,599	-				+0.8
2,777,599	-				+0.2
2,777,619	+				-0.0
2,777,619	+				-1.3
2,777,627	-				-0.0
2,777,627	-				+0.4
2,777,629	+				+0.1
2,777,644	+				-1.5
2,777,652	+				+0.1
2,777,652	+				+0.3
2,777,652	+				-0.3
2,777,657	+				-0.5
2,777,660	-				-0.3
2,777,660	-				+0.4
2,777,660	-				-0.7
2,777,662	+				-0.7
2,777,662	+				+0.2
2,777,663	+				-0.1
2,777,665	-				+0.3
2,777,666	-				-1.1
2,777,670	-				+0.3
2,777,670	-				-1.4
2,777,675	-				-0.6
2,777,681	+				+0.4
2,777,691	+				+0.6
2,777,691	+				-0.6
2,777,697	-				-1.2
2,777,699	+				+0.3
2,777,699	-				-1.7
2,777,699	-				-0.3
2,777,759	+				+0.1
2,777,768	+				+1.2
2,777,770	+				-0.3
2,777,777	+				+1.4
2,777,794	-		GFF2750	0.11	-0.7
2,777,816	+		GFF2750	0.17	-0.0
2,777,823	+		GFF2750	0.19	+0.2
2,777,823	+		GFF2750	0.19	+0.5
2,777,823	+		GFF2750	0.19	-0.1
2,777,823	+		GFF2750	0.19	-1.0
2,777,823	+		GFF2750	0.19	-0.2
2,777,823	+		GFF2750	0.19	+0.5
2,777,823	+		GFF2750	0.19	-2.4
2,777,823	+		GFF2750	0.19	+0.7
2,777,823	+		GFF2750	0.19	+0.5
2,777,823	+		GFF2750	0.19	-0.2
2,777,823	+		GFF2750	0.19	+0.8
2,777,824	-		GFF2750	0.19	+0.3
2,777,824	-		GFF2750	0.19	-1.9
2,777,829	-		GFF2750	0.20	-0.5
2,777,829	-		GFF2750	0.20	-2.3
2,777,831	-		GFF2750	0.21	-1.2
2,777,831	-		GFF2750	0.21	-0.3
2,777,831	-		GFF2750	0.21	-0.2
2,777,831	-		GFF2750	0.21	+0.1
2,777,831	-		GFF2750	0.21	-0.1
2,777,831	-		GFF2750	0.21	-0.3
2,777,831	-		GFF2750	0.21	+0.1
2,777,831	-		GFF2750	0.21	+0.1
2,777,831	-		GFF2750	0.21	-1.8
2,777,831	-		GFF2750	0.21	-0.9
2,777,831	-		GFF2750	0.21	-0.7
2,777,831	-		GFF2750	0.21	+0.1
2,777,831	-		GFF2750	0.21	-0.1
2,777,831	-		GFF2750	0.21	+1.3
2,777,831	-		GFF2750	0.21	-1.6
2,777,833	+		GFF2750	0.21	-1.3
2,777,833	+		GFF2750	0.21	+0.2
2,777,841	-		GFF2750	0.24	-0.1
2,777,866	-		GFF2750	0.30	+0.3
2,777,892	-		GFF2750	0.37	-1.5
2,777,907	+		GFF2750	0.41	+0.3
2,777,910	-		GFF2750	0.42	+0.1
2,777,929	-		GFF2750	0.47	+0.3
2,777,938	-		GFF2750	0.49	+0.3
2,777,956	+		GFF2750	0.54	+0.6
2,777,964	-		GFF2750	0.56	+0.3
2,777,970	-		GFF2750	0.58	-0.2
2,777,990	-		GFF2750	0.63	-1.6
2,777,995	+		GFF2750	0.64	-0.4
2,778,020	+		GFF2750	0.71	-0.5
2,778,020	+		GFF2750	0.71	-0.5
2,778,028	-		GFF2750	0.73	-0.9
2,778,028	-		GFF2750	0.73	-0.5
2,778,033	-		GFF2750	0.74	+0.2
2,778,033	-		GFF2750	0.74	+0.9
2,778,051	-		GFF2750	0.79	+1.2
2,778,064	+		GFF2750	0.83	+0.8
2,778,072	-		GFF2750	0.85	-1.3
2,778,079	+		GFF2750	0.87	-1.3
2,778,082	-		GFF2750	0.87	-0.6
2,778,084	+		GFF2750	0.88	-2.6
2,778,092	-				-0.2
2,778,092	-				+0.6
2,778,092	-				+0.2
2,778,092	-				-1.1
2,778,092	-				-1.2
2,778,092	-				-1.2
2,778,092	-				+0.1
2,778,107	+				-1.3
2,778,112	+				-1.9
2,778,112	+				-1.2
2,778,112	+				+0.4
2,778,112	+				-0.5
2,778,112	+				+0.6
2,778,112	+				-1.2
2,778,112	+				+0.4
2,778,119	+				-0.2
2,778,119	+				-0.0
2,778,119	+				-1.8
2,778,119	+				-2.2
2,778,119	+				-0.8
2,778,119	+				-1.5
2,778,119	+				+0.3
2,778,119	+				-1.3
2,778,119	+				-0.3
2,778,119	+				-0.8
2,778,124	+				-0.7
2,778,124	+				-0.2
2,778,124	+				-0.2
2,778,149	+				-1.8
2,778,185	-				-1.4
2,778,185	-				-0.4
2,778,294	+				-0.9
2,778,336	+				-0.1
2,778,336	+				-1.6
2,778,357	-				+0.4
2,778,362	+				-0.5
2,778,362	+				-2.4
2,778,370	-				-2.0
2,778,380	-				-1.2
2,778,405	+				-0.9
2,778,405	+				-2.1
2,778,405	+				+1.1
2,778,405	+				+0.2
2,778,405	+				-0.2
2,778,405	+				-1.3
2,778,405	+				-0.8
2,778,405	+				-0.2
2,778,405	+				-0.5
2,778,405	+				+0.4
2,778,405	+				+0.6
2,778,405	+				-0.2
2,778,405	+				-1.5
2,778,405	+				-1.2
2,778,405	+				-0.7
2,778,413	-				-1.4
2,778,413	-				-1.3
2,778,413	-				-1.9
2,778,413	-				-1.3
2,778,413	-				-0.2
2,778,413	-				-1.6
2,778,413	-				-1.3
2,778,417	+				-0.7
2,778,417	+				-0.2
2,778,417	+				-1.6
2,778,417	+				-1.2
2,778,420	-				+0.1
2,778,420	-				+0.7
2,778,425	-				-0.9
2,778,460	+				-0.7
2,778,468	-				+0.8
2,778,472	+				-0.7
2,778,472	+				+0.4
2,778,499	+		GFF2751	0.25	+0.8
2,778,524	+		GFF2751	0.46	-0.8
2,778,526	+		GFF2751	0.48	-0.0
2,778,559	+		GFF2751	0.76	+1.1
2,778,714	+				+1.1
2,778,722	-				-1.2
2,778,770	-		GFF2752	0.12	+1.6
2,778,785	+		GFF2752	0.13	-0.3
2,778,959	-		GFF2752	0.24	-1.1
2,779,018	-		GFF2752	0.28	+0.3
2,779,076	+		GFF2752	0.32	+0.4
2,779,087	+		GFF2752	0.33	-1.6
2,779,102	+		GFF2752	0.34	+0.5
2,779,105	-		GFF2752	0.34	-1.3
2,779,105	-		GFF2752	0.34	-1.4
2,779,115	-		GFF2752	0.35	+1.0
2,779,293	+		GFF2752	0.46	-1.7
2,779,425	+		GFF2752	0.55	-1.2
2,779,430	+		GFF2752	0.55	+0.4
2,779,524	+		GFF2752	0.61	-0.3
2,779,524	+		GFF2752	0.61	+1.4
2,779,524	+		GFF2752	0.61	-1.2
2,779,524	+		GFF2752	0.61	+0.1
2,779,532	-		GFF2752	0.62	-0.1
2,779,532	-		GFF2752	0.62	+1.1
2,779,549	-		GFF2752	0.63	-1.8
2,779,562	+		GFF2752	0.64	+0.2
2,779,621	+		GFF2752	0.68	-2.0
2,779,621	+		GFF2752	0.68	-1.2
2,779,629	+		GFF2752	0.68	+0.5
2,779,629	+		GFF2752	0.68	+0.7
2,779,629	+		GFF2752	0.68	-0.1
2,779,637	-		GFF2752	0.69	-1.3
2,779,637	-		GFF2752	0.69	-1.5
2,779,637	-		GFF2752	0.69	-1.2
2,779,639	-		GFF2752	0.69	-1.3
2,779,639	-		GFF2752	0.69	-1.9
2,779,649	-		GFF2752	0.69	-1.2
2,779,690	-		GFF2752	0.72	-1.6
2,779,799	-		GFF2752	0.79	+0.4
2,779,878	-		GFF2752	0.84	+0.7
2,779,898	-		GFF2752	0.86	-1.4
2,779,924	+		GFF2752	0.87	+0.8
2,779,924	+		GFF2752	0.87	-1.3
2,779,926	-		GFF2752	0.88	-0.2
2,779,932	-		GFF2752	0.88	-1.8
2,779,965	+				+0.4
2,780,056	+				+1.5
2,780,056	+				-1.3
2,780,056	+				+0.6
2,780,124	+				-0.5
2,780,132	-				-0.9
2,780,132	-				+0.7
2,780,204	+		GFF2753	0.15	+0.6
2,780,245	-		GFF2753	0.21	-1.2
2,780,245	-		GFF2753	0.21	-0.0
2,780,329	-		GFF2753	0.33	-2.0
2,780,343	+		GFF2753	0.36	-1.8
2,780,343	+		GFF2753	0.36	-1.7
2,780,351	-		GFF2753	0.37	-1.3
2,780,351	-		GFF2753	0.37	-2.4
2,780,351	-		GFF2753	0.37	-0.0
2,780,423	-		GFF2753	0.48	-2.0
2,780,447	+		GFF2753	0.51	-1.3
2,780,447	+		GFF2753	0.51	+0.0
2,780,455	-		GFF2753	0.52	-1.3
2,780,455	-		GFF2753	0.52	-1.3
2,780,455	-		GFF2753	0.52	-1.7
2,780,606	+		GFF2753	0.75	-1.3
2,780,665	-		GFF2753	0.84	-0.5
2,780,673	-		GFF2753	0.85	-0.4
2,780,676	+		GFF2753	0.85	+0.3
2,780,676	+		GFF2753	0.85	-1.6
2,780,686	+		GFF2753	0.87	-1.9
2,780,733	+				+1.4
2,780,739	+				-2.5
2,780,743	+				+1.4
2,780,743	+				+1.4
2,780,754	+				-0.2
2,780,794	-				-1.2
2,780,805	-				-1.5
2,780,832	-				+0.6
2,780,865	-				-0.5
2,781,009	+				+0.8
2,781,009	+				-0.0
2,781,098	+				-1.2
2,781,098	+				+0.3
2,781,098	+				-1.3