Strain Fitness in Sphingobium sp. HT1-2 around GFF2713

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,733,845	+				-1.6
2,733,853	-				-2.0
2,733,853	-				+0.8
2,733,875	-				+2.0
2,733,875	-				-0.0
2,733,875	-				-0.5
2,733,919	-				-0.1
2,733,923	+				+0.3
2,733,923	+				-0.9
2,733,923	+				-0.6
2,733,923	+				+0.4
2,733,931	-				-1.1
2,733,931	-				+0.1
2,733,932	+				-0.5
2,733,932	+				-0.2
2,733,932	+				-0.1
2,733,932	+				-0.5
2,733,932	-				-0.2
2,733,932	-				+0.5
2,733,940	-				-0.8
2,733,940	-				-1.0
2,733,944	+				+0.0
2,733,946	-				-0.3
2,733,952	-				-0.4
2,733,952	-				-1.2
2,734,012	-				+0.1
2,734,022	-				-0.2
2,734,034	-				-1.7
2,734,287	+				-0.2
2,734,312	+				-0.4
2,734,312	+				-0.0
2,734,312	+				-0.6
2,734,312	+				-1.3
2,734,312	+				-2.1
2,734,312	+				-0.0
2,734,312	+				-1.0
2,734,317	+				+0.7
2,734,317	+				-1.0
2,734,320	-		GFF2712	0.11	-1.2
2,734,320	-		GFF2712	0.11	+0.8
2,734,320	-		GFF2712	0.11	+0.5
2,734,320	-		GFF2712	0.11	-0.6
2,734,320	-		GFF2712	0.11	-0.6
2,734,320	-		GFF2712	0.11	+0.1
2,734,320	-		GFF2712	0.11	-0.6
2,734,320	-		GFF2712	0.11	-1.4
2,734,320	-		GFF2712	0.11	+0.7
2,734,320	-		GFF2712	0.11	+0.0
2,734,320	-		GFF2712	0.11	-0.8
2,734,325	-		GFF2712	0.14	-0.2
2,734,325	-		GFF2712	0.14	+1.0
2,734,382	+		GFF2712	0.58	-0.6
2,734,410	-		GFF2712	0.79	-2.0
2,734,415	-		GFF2712	0.83	-1.7
2,734,425	+				-0.8
2,734,433	-				+0.6
2,734,433	-				+1.2
2,734,485	+				-0.9
2,734,593	-				-0.2
2,734,605	+				-0.2
2,734,606	+				-1.1
2,734,610	+				-0.6
2,734,615	+				+0.2
2,734,615	+				-2.0
2,734,615	+				-0.2
2,734,616	+				+1.0
2,734,616	+				+0.7
2,734,623	-				-0.9
2,734,623	-				-0.2
2,734,681	+		GFF2713	0.13	-1.9
2,734,681	+		GFF2713	0.13	-1.6
2,734,684	-		GFF2713	0.13	+1.2
2,734,686	+		GFF2713	0.13	-0.6
2,734,689	-		GFF2713	0.13	-0.6
2,734,689	-		GFF2713	0.13	-0.2
2,734,689	-		GFF2713	0.13	-1.2
2,734,689	-		GFF2713	0.13	-0.2
2,734,705	+		GFF2713	0.15	-1.4
2,734,738	-		GFF2713	0.18	-0.3
2,734,766	-		GFF2713	0.21	+0.8
2,734,789	+		GFF2713	0.24	-0.3
2,734,789	+		GFF2713	0.24	+0.5
2,734,819	+		GFF2713	0.27	+0.3
2,734,822	-		GFF2713	0.27	-1.9
2,734,905	+		GFF2713	0.35	+1.4
2,734,905	+		GFF2713	0.35	+0.5
2,734,915	+		GFF2713	0.36	+0.9
2,734,915	+		GFF2713	0.36	-1.2
2,734,915	+		GFF2713	0.36	-1.2
2,734,915	+		GFF2713	0.36	-0.0
2,734,915	+		GFF2713	0.36	+0.5
2,734,915	+		GFF2713	0.36	+0.9
2,734,915	+		GFF2713	0.36	+0.4
2,734,915	+		GFF2713	0.36	-2.0
2,734,915	+		GFF2713	0.36	+1.2
2,734,915	+		GFF2713	0.36	+0.9
2,734,915	+		GFF2713	0.36	+0.7
2,734,915	+		GFF2713	0.36	-0.5
2,734,920	+		GFF2713	0.37	-0.4
2,734,920	+		GFF2713	0.37	-0.0
2,734,920	+		GFF2713	0.37	-0.5
2,734,920	+		GFF2713	0.37	-0.5
2,734,920	+		GFF2713	0.37	+0.1
2,734,920	+		GFF2713	0.37	+0.1
2,734,920	+		GFF2713	0.37	-1.9
2,734,920	+		GFF2713	0.37	-1.0
2,734,920	+		GFF2713	0.37	-0.3
2,734,920	+		GFF2713	0.37	+0.8
2,734,923	-		GFF2713	0.37	-0.9
2,734,923	-		GFF2713	0.37	-0.5
2,734,923	-		GFF2713	0.37	-0.4
2,734,923	-		GFF2713	0.37	+0.0
2,734,923	-		GFF2713	0.37	-0.4
2,734,923	-		GFF2713	0.37	+0.6
2,734,923	-		GFF2713	0.37	-0.1
2,734,923	-		GFF2713	0.37	-1.2
2,734,926	+		GFF2713	0.38	-1.5
2,734,928	-		GFF2713	0.38	-1.5
2,734,928	-		GFF2713	0.38	-0.1
2,734,928	-		GFF2713	0.38	+0.0
2,734,928	-		GFF2713	0.38	-0.4
2,734,928	-		GFF2713	0.38	-0.5
2,734,928	-		GFF2713	0.38	+0.7
2,734,928	-		GFF2713	0.38	-1.0
2,734,933	-		GFF2713	0.38	+0.2
2,734,933	-		GFF2713	0.38	-0.4
2,734,958	+		GFF2713	0.41	-1.1
2,734,958	+		GFF2713	0.41	-1.1
2,734,966	-		GFF2713	0.42	-0.2
2,734,966	-		GFF2713	0.42	-0.9
2,734,966	-		GFF2713	0.42	-0.9
2,734,966	-		GFF2713	0.42	-1.8
2,734,967	+		GFF2713	0.42	+1.1
2,734,972	+		GFF2713	0.42	+1.2
2,734,980	-		GFF2713	0.43	-1.4
2,734,980	-		GFF2713	0.43	-1.1
2,735,025	-		GFF2713	0.48	-0.9
2,735,032	-		GFF2713	0.48	+0.7
2,735,069	-		GFF2713	0.52	+0.3
2,735,074	-		GFF2713	0.53	-0.2
2,735,080	-		GFF2713	0.53	-1.1
2,735,100	+		GFF2713	0.55	+0.6
2,735,114	+		GFF2713	0.57	-1.2
2,735,114	+		GFF2713	0.57	-1.3
2,735,114	+		GFF2713	0.57	-2.7
2,735,114	+		GFF2713	0.57	+0.4
2,735,114	+		GFF2713	0.57	-0.8
2,735,114	+		GFF2713	0.57	-1.2
2,735,120	+		GFF2713	0.57	+0.2
2,735,122	-		GFF2713	0.57	-0.9
2,735,122	-		GFF2713	0.57	-0.4
2,735,122	-		GFF2713	0.57	-1.0
2,735,122	-		GFF2713	0.57	+0.3
2,735,122	-		GFF2713	0.57	-0.8
2,735,122	-		GFF2713	0.57	+0.1
2,735,145	+		GFF2713	0.60	+1.1
2,735,145	+		GFF2713	0.60	-0.5
2,735,145	+		GFF2713	0.60	-0.2
2,735,145	+		GFF2713	0.60	+0.7
2,735,145	+		GFF2713	0.60	-2.4
2,735,145	+		GFF2713	0.60	-0.5
2,735,153	-		GFF2713	0.61	-0.6
2,735,153	-		GFF2713	0.61	+0.6
2,735,153	-		GFF2713	0.61	-1.5
2,735,153	-		GFF2713	0.61	+0.3
2,735,153	-		GFF2713	0.61	-0.2
2,735,153	-		GFF2713	0.61	-0.2
2,735,153	-		GFF2713	0.61	-0.2
2,735,153	-		GFF2713	0.61	-2.4
2,735,153	-		GFF2713	0.61	-2.5
2,735,153	-		GFF2713	0.61	-0.0
2,735,153	-		GFF2713	0.61	-1.2
2,735,155	-		GFF2713	0.61	-0.2
2,735,158	+		GFF2713	0.61	-0.3
2,735,158	+		GFF2713	0.61	+0.1
2,735,181	+		GFF2713	0.64	+0.0
2,735,181	+		GFF2713	0.64	-0.0
2,735,214	-		GFF2713	0.67	-1.0
2,735,214	-		GFF2713	0.67	+0.9
2,735,214	-		GFF2713	0.67	-0.7
2,735,214	-		GFF2713	0.67	+0.4
2,735,214	-		GFF2713	0.67	+0.4
2,735,232	+		GFF2713	0.69	+0.3
2,735,240	-		GFF2713	0.70	-0.8
2,735,250	-		GFF2713	0.71	+0.0
2,735,251	+		GFF2713	0.71	-0.5
2,735,319	+		GFF2713	0.78	-0.1
2,735,323	+		GFF2713	0.78	+0.7
2,735,324	+		GFF2713	0.78	+0.2
2,735,327	-		GFF2713	0.78	+0.7
2,735,329	+		GFF2713	0.79	+0.0
2,735,332	-		GFF2713	0.79	-0.6
2,735,337	-		GFF2713	0.79	+0.2
2,735,363	+		GFF2713	0.82	-1.4
2,735,371	+		GFF2713	0.83	+0.4
2,735,376	+		GFF2713	0.83	+0.4
2,735,381	-		GFF2713	0.84	+0.1
2,735,389	-		GFF2713	0.85	-1.4
2,735,389	-		GFF2713	0.85	-1.3
2,735,463	+				-0.0
2,735,463	+				-0.7
2,735,471	-				+0.1
2,735,491	-				-2.0
2,735,496	-				+0.7
2,735,511	+				-2.2
2,735,521	+				-0.5
2,735,529	-				+1.0
2,735,529	-				-0.2
2,735,543	-				-0.8
2,735,587	+				+0.4
2,735,587	+				-1.0
2,735,587	+				-0.2
2,735,589	+				+0.1
2,735,595	+				-0.2
2,735,595	-				-0.9
2,735,595	-				-0.4
2,735,635	-				-0.4
2,735,654	+				-0.8
2,735,676	-				+1.4
2,735,676	-				+0.3
2,735,688	-				+1.0
2,735,689	-				-1.8
2,735,708	+		GFF2714	0.12	-0.8
2,735,746	+		GFF2714	0.19	-1.2
2,735,751	+		GFF2714	0.20	-0.3
2,735,758	-		GFF2714	0.22	-0.1
2,735,758	-		GFF2714	0.22	+0.8
2,735,759	-		GFF2714	0.22	-2.8
2,735,775	+		GFF2714	0.25	-0.4
2,735,775	+		GFF2714	0.25	+0.1
2,735,783	-		GFF2714	0.27	-1.1
2,735,783	-		GFF2714	0.27	+0.0
2,735,786	+		GFF2714	0.27	+0.8
2,735,811	-		GFF2714	0.32	-0.2
2,735,831	+		GFF2714	0.36	-0.5
2,735,841	+		GFF2714	0.38	-2.2
2,735,853	+		GFF2714	0.40	-1.3
2,735,853	+		GFF2714	0.40	-2.7
2,735,861	-		GFF2714	0.42	-0.7
2,735,861	-		GFF2714	0.42	-0.3
2,735,861	-		GFF2714	0.42	-0.3
2,735,861	-		GFF2714	0.42	-1.2
2,735,861	-		GFF2714	0.42	-0.7
2,735,861	-		GFF2714	0.42	-0.3
2,735,861	-		GFF2714	0.42	-0.9
2,735,861	-		GFF2714	0.42	-1.8
2,735,861	-		GFF2714	0.42	+0.1
2,735,861	-		GFF2714	0.42	-0.8
2,735,864	+		GFF2714	0.42	-0.4
2,735,864	+		GFF2714	0.42	-0.6
2,735,872	-		GFF2714	0.44	+0.3
2,735,872	-		GFF2714	0.44	+0.1
2,735,872	-		GFF2714	0.44	-0.2
2,735,872	-		GFF2714	0.44	-1.3
2,735,872	-		GFF2714	0.44	-1.7
2,735,872	-		GFF2714	0.44	-1.7
2,735,901	+		GFF2714	0.50	-0.8
2,735,909	+		GFF2714	0.51	+0.4
2,735,909	+		GFF2714	0.51	-2.0
2,735,909	+		GFF2714	0.51	-0.2
2,735,909	+		GFF2714	0.51	-0.4
2,735,909	+		GFF2714	0.51	-1.4
2,735,914	+		GFF2714	0.52	-0.0
2,735,914	+		GFF2714	0.52	-1.4
2,735,914	+		GFF2714	0.52	-0.3
2,735,914	+		GFF2714	0.52	-0.0
2,735,914	+		GFF2714	0.52	-0.0
2,735,917	-		GFF2714	0.53	-0.5
2,735,917	-		GFF2714	0.53	-0.5
2,735,917	-		GFF2714	0.53	-0.5
2,735,917	-		GFF2714	0.53	+1.5
2,735,919	+		GFF2714	0.53	-0.1
2,735,919	+		GFF2714	0.53	+0.7
2,735,922	-		GFF2714	0.54	-0.8
2,735,922	-		GFF2714	0.54	-0.6
2,735,927	-		GFF2714	0.55	+0.9
2,735,927	-		GFF2714	0.55	-0.9
2,735,935	-		GFF2714	0.56	+1.0
2,735,944	+		GFF2714	0.58	-0.3
2,735,945	+		GFF2714	0.58	-0.5
2,735,947	-		GFF2714	0.58	-0.9
2,735,953	-		GFF2714	0.60	+0.0
2,735,972	+		GFF2714	0.63	+1.8
2,735,973	+		GFF2714	0.64	+1.4
2,735,974	+		GFF2714	0.64	-1.8
2,735,977	+		GFF2714	0.64	+0.1
2,735,980	-		GFF2714	0.65	-0.0
2,735,980	-		GFF2714	0.65	-2.5
2,735,980	-		GFF2714	0.65	-0.4
2,735,985	-		GFF2714	0.66	+0.5
2,735,985	-		GFF2714	0.66	+1.0
2,736,022	+		GFF2714	0.73	-0.5
2,736,029	+		GFF2714	0.74	-1.5
2,736,030	-		GFF2714	0.75	-0.9
2,736,032	-		GFF2714	0.75	-0.3
2,736,034	+		GFF2714	0.75	-0.4
2,736,044	-		GFF2714	0.77	-2.6
2,736,103	-		GFF2714	0.89	+0.5
2,736,103	-		GFF2714	0.89	-0.0
2,736,124	+				-0.0
2,736,140	-				-0.1
2,736,146	+				-0.0
2,736,151	+				-1.9
2,736,159	-				-0.8
2,736,227	+				-0.9
2,736,227	+				-1.4
2,736,232	+				-0.6
2,736,232	+				-0.4
2,736,235	-				-0.6
2,736,240	-				+0.7
2,736,245	-				+1.0
2,736,261	-				+0.1
2,736,263	+				+0.2
2,736,273	+				+0.0
2,736,291	+				-0.7
2,736,294	-				-1.6
2,736,298	+				-1.2
2,736,299	-				-1.1
2,736,299	-				-1.0
2,736,299	-				+0.5
2,736,310	+				+0.4
2,736,310	-				-0.7
2,736,311	-				-0.1
2,736,315	-				-2.4
2,736,338	-				-2.3
2,736,338	-				-0.9
2,736,338	-				-1.7
2,736,341	+				-0.0
2,736,345	+				+1.1
2,736,348	-				-1.4
2,736,353	-				-0.7
2,736,381	+				-0.3
2,736,396	+				-1.2
2,736,401	+				-2.2
2,736,421	-				-3.6
2,736,431	-				-0.5
2,736,452	-				-0.3
2,736,452	-				-1.2
2,736,452	-				+1.0
2,736,467	-				-1.3
2,736,469	+				-0.9
2,736,484	-		GFF2715	0.10	-1.0
2,736,494	-		GFF2715	0.12	-1.8
2,736,514	+		GFF2715	0.16	-0.6
2,736,519	+		GFF2715	0.17	-1.2
2,736,522	-		GFF2715	0.18	-1.6
2,736,524	+		GFF2715	0.18	-1.4
2,736,524	+		GFF2715	0.18	-2.0
2,736,526	+		GFF2715	0.18	-0.6
2,736,526	+		GFF2715	0.18	-0.2
2,736,527	-		GFF2715	0.19	-0.2
2,736,527	-		GFF2715	0.19	-0.6
2,736,527	-		GFF2715	0.19	-1.3