Strain Fitness in Sphingobium sp. HT1-2 around GFF2677

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,695,488	-		GFF2676	0.85	-1.2
2,695,543	+		GFF2676	0.89	-0.0
2,695,582	-				+1.2
2,695,595	+				-0.6
2,695,603	-				+0.5
2,695,611	+				+0.0
2,695,619	-				-1.4
2,695,628	+				+0.7
2,695,636	-				-0.4
2,695,636	-				-1.0
2,695,636	-				+1.3
2,695,636	-				+1.1
2,695,677	-				-0.9
2,695,788	+				-1.5
2,695,796	-				-0.2
2,695,799	+				-0.7
2,695,799	+				-1.7
2,695,799	+				+0.3
2,695,799	+				+0.6
2,695,799	+				+0.1
2,695,799	+				-1.6
2,695,807	-				+0.4
2,695,807	-				-1.5
2,695,809	+				-0.3
2,695,861	+				+0.9
2,695,861	+				+1.1
2,695,861	+				+0.6
2,695,914	-				+0.6
2,695,937	+				-1.0
2,695,937	+				-1.0
2,695,937	+				+0.3
2,695,961	-				-0.4
2,696,014	-				+0.2
2,696,035	+				-1.2
2,696,035	+				+0.0
2,696,035	+				+0.4
2,696,036	-				+1.0
2,696,036	-				-0.3
2,696,036	-				-0.0
2,696,043	-				+0.4
2,696,043	-				-0.3
2,696,043	-				-2.2
2,696,043	-				+1.0
2,696,045	+				-1.7
2,696,045	+				-0.6
2,696,053	-				+0.6
2,696,053	-				-1.2
2,696,058	+				-0.7
2,696,058	+				-0.5
2,696,058	+				+0.0
2,696,076	-		GFF2677	0.12	+1.5
2,696,103	+		GFF2677	0.15	-0.4
2,696,110	+		GFF2677	0.16	-0.2
2,696,117	+		GFF2677	0.17	-1.8
2,696,117	+		GFF2677	0.17	-1.0
2,696,117	+		GFF2677	0.17	+0.1
2,696,117	+		GFF2677	0.17	-0.3
2,696,117	+		GFF2677	0.17	+0.4
2,696,117	+		GFF2677	0.17	-0.2
2,696,117	+		GFF2677	0.17	+1.4
2,696,117	+		GFF2677	0.17	-0.3
2,696,122	+		GFF2677	0.17	+0.4
2,696,125	+		GFF2677	0.18	-1.2
2,696,125	-		GFF2677	0.18	+0.3
2,696,125	-		GFF2677	0.18	-1.9
2,696,125	-		GFF2677	0.18	+0.6
2,696,125	-		GFF2677	0.18	+0.6
2,696,125	-		GFF2677	0.18	-0.2
2,696,125	-		GFF2677	0.18	-0.9
2,696,125	-		GFF2677	0.18	+0.2
2,696,129	+		GFF2677	0.18	+0.3
2,696,150	+		GFF2677	0.21	-0.2
2,696,158	-		GFF2677	0.22	+0.4
2,696,162	+		GFF2677	0.22	-1.0
2,696,162	+		GFF2677	0.22	+0.2
2,696,162	+		GFF2677	0.22	-0.1
2,696,162	+		GFF2677	0.22	+0.4
2,696,162	+		GFF2677	0.22	-0.8
2,696,162	+		GFF2677	0.22	-0.4
2,696,170	-		GFF2677	0.23	-1.6
2,696,170	-		GFF2677	0.23	+0.9
2,696,170	-		GFF2677	0.23	-2.7
2,696,172	+		GFF2677	0.24	-0.4
2,696,180	-		GFF2677	0.25	-0.3
2,696,200	+		GFF2677	0.27	-1.3
2,696,200	+		GFF2677	0.27	-0.4
2,696,200	+		GFF2677	0.27	-0.5
2,696,200	+		GFF2677	0.27	-1.4
2,696,200	+		GFF2677	0.27	+0.9
2,696,200	+		GFF2677	0.27	+1.1
2,696,201	+		GFF2677	0.27	-1.3
2,696,208	-		GFF2677	0.28	+0.7
2,696,219	+		GFF2677	0.29	-0.2
2,696,224	+		GFF2677	0.30	+0.6
2,696,227	+		GFF2677	0.30	-0.4
2,696,227	-		GFF2677	0.30	-1.0
2,696,232	-		GFF2677	0.31	-1.2
2,696,234	+		GFF2677	0.31	-1.4
2,696,234	+		GFF2677	0.31	-1.1
2,696,242	-		GFF2677	0.32	-2.9
2,696,242	-		GFF2677	0.32	-0.0
2,696,242	-		GFF2677	0.32	-2.0
2,696,242	-		GFF2677	0.32	-0.4
2,696,243	-		GFF2677	0.32	-0.1
2,696,243	-		GFF2677	0.32	+0.9
2,696,245	+		GFF2677	0.33	+0.3
2,696,254	+		GFF2677	0.34	-0.5
2,696,254	+		GFF2677	0.34	+0.3
2,696,254	+		GFF2677	0.34	+1.2
2,696,254	+		GFF2677	0.34	+0.1
2,696,254	+		GFF2677	0.34	-0.4
2,696,254	+		GFF2677	0.34	+1.1
2,696,254	+		GFF2677	0.34	+0.1
2,696,254	+		GFF2677	0.34	-1.2
2,696,262	-		GFF2677	0.35	+0.3
2,696,262	-		GFF2677	0.35	+0.5
2,696,262	-		GFF2677	0.35	+0.8
2,696,262	-		GFF2677	0.35	-0.5
2,696,262	-		GFF2677	0.35	+0.8
2,696,262	-		GFF2677	0.35	-2.7
2,696,262	-		GFF2677	0.35	-1.6
2,696,262	-		GFF2677	0.35	-0.4
2,696,262	-		GFF2677	0.35	+0.5
2,696,262	-		GFF2677	0.35	-1.1
2,696,262	-		GFF2677	0.35	+2.6
2,696,262	-		GFF2677	0.35	-1.3
2,696,262	-		GFF2677	0.35	-1.0
2,696,264	+		GFF2677	0.35	+0.4
2,696,264	+		GFF2677	0.35	-1.2
2,696,273	+		GFF2677	0.36	+0.3
2,696,273	+		GFF2677	0.36	+0.2
2,696,273	+		GFF2677	0.36	+0.1
2,696,273	+		GFF2677	0.36	+0.9
2,696,278	+		GFF2677	0.37	-0.5
2,696,281	-		GFF2677	0.37	+0.5
2,696,281	-		GFF2677	0.37	+0.9
2,696,281	-		GFF2677	0.37	-0.3
2,696,285	+		GFF2677	0.38	+0.4
2,696,285	+		GFF2677	0.38	+1.1
2,696,285	+		GFF2677	0.38	-0.1
2,696,285	+		GFF2677	0.38	-0.0
2,696,285	+		GFF2677	0.38	+0.9
2,696,285	+		GFF2677	0.38	+0.5
2,696,286	-		GFF2677	0.38	+1.2
2,696,292	+		GFF2677	0.39	-0.4
2,696,293	-		GFF2677	0.39	+0.1
2,696,293	-		GFF2677	0.39	-0.2
2,696,293	-		GFF2677	0.39	-0.5
2,696,293	-		GFF2677	0.39	-1.0
2,696,293	-		GFF2677	0.39	-0.1
2,696,293	-		GFF2677	0.39	-0.7
2,696,293	-		GFF2677	0.39	-0.9
2,696,293	-		GFF2677	0.39	-0.8
2,696,293	-		GFF2677	0.39	+0.5
2,696,293	-		GFF2677	0.39	-1.2
2,696,295	+		GFF2677	0.39	+0.3
2,696,305	+		GFF2677	0.40	+1.5
2,696,326	+		GFF2677	0.43	+0.6
2,696,329	-		GFF2677	0.43	+1.5
2,696,341	+		GFF2677	0.45	-0.4
2,696,346	+		GFF2677	0.45	-1.1
2,696,351	+		GFF2677	0.46	-0.2
2,696,354	-		GFF2677	0.46	+0.8
2,696,354	-		GFF2677	0.46	-0.3
2,696,356	-		GFF2677	0.47	+0.4
2,696,378	+		GFF2677	0.49	+0.1
2,696,433	+		GFF2677	0.56	+0.9
2,696,434	-		GFF2677	0.56	-1.3
2,696,555	-		GFF2677	0.71	-2.0
2,696,556	-		GFF2677	0.72	-0.6
2,696,563	+		GFF2677	0.72	-0.9
2,696,566	-		GFF2677	0.73	+0.6
2,696,573	+		GFF2677	0.74	-0.1
2,696,573	+		GFF2677	0.74	-2.1
2,696,587	+		GFF2677	0.75	-0.8
2,696,608	+		GFF2677	0.78	-0.3
2,696,628	+		GFF2677	0.81	-0.4
2,696,628	+		GFF2677	0.81	-0.8
2,696,636	-		GFF2677	0.82	+0.1
2,696,644	-		GFF2677	0.83	-0.7
2,696,682	+		GFF2677	0.87	-0.7
2,696,701	-		GFF2677	0.90	-2.4
2,696,722	+				+0.3
2,696,723	-				-2.0
2,696,735	-				-0.1
2,696,737	+				-0.8
2,696,737	+				+0.3
2,696,741	+				+1.3
2,696,747	+				+1.1
2,696,749	-				-1.4
2,696,755	-				+0.1
2,696,756	-				-1.0
2,696,808	+				-0.4
2,696,831	+				-0.8
2,696,863	+				+0.7
2,696,991	+				+0.8
2,696,993	+				-0.2
2,696,993	+				-0.8
2,697,017	-				-2.0
2,697,019	+				-2.6
2,697,048	+				-0.4
2,697,048	+				-1.0
2,697,048	+				-1.0
2,697,048	+				+1.2
2,697,048	+				-0.0
2,697,048	+				+1.6
2,697,048	+				-0.6
2,697,048	+				-1.5
2,697,056	-				+0.4
2,697,056	-				+0.2
2,697,056	-				-0.4
2,697,056	-				-1.3
2,697,056	-				-0.2
2,697,056	-				-0.5
2,697,056	-				-1.6
2,697,056	-				+0.0
2,697,056	-				+1.3
2,697,056	-				-0.5
2,697,064	-				-2.1
2,697,077	-				-0.0
2,697,082	-				+0.5
2,697,110	+				-1.3
2,697,115	+				-1.9
2,697,146	+				-0.3
2,697,146	+				-1.6
2,697,146	+				-0.4
2,697,146	+				+0.7
2,697,146	+				-0.4
2,697,154	-				-0.2
2,697,154	-				+0.1
2,697,174	+				-0.4
2,697,178	+				-0.6
2,697,181	-				-0.3
2,697,188	-		GFF2678	0.10	-1.1
2,697,196	-		GFF2678	0.11	-1.8
2,697,277	+		GFF2678	0.14	+0.6
2,697,277	+		GFF2678	0.14	+0.7
2,697,277	+		GFF2678	0.14	-0.1
2,697,277	+		GFF2678	0.14	-0.7
2,697,277	+		GFF2678	0.14	+0.2
2,697,277	+		GFF2678	0.14	+0.7
2,697,277	+		GFF2678	0.14	-0.3
2,697,285	-		GFF2678	0.14	-0.8
2,697,285	-		GFF2678	0.14	+0.1
2,697,285	-		GFF2678	0.14	-0.1
2,697,285	-		GFF2678	0.14	+0.4
2,697,285	-		GFF2678	0.14	-0.0
2,697,285	-		GFF2678	0.14	+1.3
2,697,285	-		GFF2678	0.14	+0.2
2,697,300	+		GFF2678	0.15	-1.4
2,697,328	-		GFF2678	0.16	+0.7
2,697,344	+		GFF2678	0.17	-1.0
2,697,344	+		GFF2678	0.17	+0.5
2,697,344	+		GFF2678	0.17	-0.0
2,697,344	+		GFF2678	0.17	-1.3
2,697,344	+		GFF2678	0.17	+0.5
2,697,344	+		GFF2678	0.17	-0.2
2,697,347	+		GFF2678	0.17	-0.7
2,697,352	+		GFF2678	0.17	-0.6
2,697,352	+		GFF2678	0.17	+0.1
2,697,352	-		GFF2678	0.17	-1.5
2,697,352	-		GFF2678	0.17	-1.3
2,697,354	+		GFF2678	0.17	+0.9
2,697,354	+		GFF2678	0.17	-1.9
2,697,360	-		GFF2678	0.18	+0.3
2,697,362	-		GFF2678	0.18	+0.7
2,697,362	-		GFF2678	0.18	-0.4
2,697,362	-		GFF2678	0.18	+1.1
2,697,374	+		GFF2678	0.18	-0.3
2,697,395	-		GFF2678	0.19	-0.1
2,697,397	-		GFF2678	0.19	-1.2
2,697,399	+		GFF2678	0.19	+0.9
2,697,405	-		GFF2678	0.20	-0.4
2,697,405	-		GFF2678	0.20	+1.1
2,697,417	-		GFF2678	0.20	-0.6
2,697,417	-		GFF2678	0.20	-1.3
2,697,417	-		GFF2678	0.20	+0.7
2,697,429	+		GFF2678	0.21	-0.8
2,697,445	+		GFF2678	0.22	+0.4
2,697,447	+		GFF2678	0.22	-0.0
2,697,447	+		GFF2678	0.22	-0.4
2,697,468	+		GFF2678	0.23	-0.9
2,697,475	-		GFF2678	0.23	-2.0
2,697,489	+		GFF2678	0.23	-2.1
2,697,509	+		GFF2678	0.24	-1.1
2,697,515	+		GFF2678	0.25	-0.9
2,697,522	+		GFF2678	0.25	-1.7
2,697,522	+		GFF2678	0.25	-0.4
2,697,522	+		GFF2678	0.25	+0.1
2,697,522	+		GFF2678	0.25	+0.1
2,697,529	+		GFF2678	0.25	+0.4
2,697,529	+		GFF2678	0.25	-0.2
2,697,530	-		GFF2678	0.25	+0.1
2,697,530	-		GFF2678	0.25	+0.7
2,697,545	-		GFF2678	0.26	+0.5
2,697,567	+		GFF2678	0.27	-0.3
2,697,567	+		GFF2678	0.27	-0.3
2,697,567	+		GFF2678	0.27	-2.5
2,697,572	+		GFF2678	0.27	-1.5
2,697,572	+		GFF2678	0.27	-0.9
2,697,575	-		GFF2678	0.27	-0.8
2,697,599	+		GFF2678	0.28	-1.1
2,697,599	+		GFF2678	0.28	-0.8
2,697,636	-		GFF2678	0.30	+0.6
2,697,642	+		GFF2678	0.30	-0.6
2,697,653	+		GFF2678	0.31	-0.2
2,697,658	+		GFF2678	0.31	-1.2
2,697,658	+		GFF2678	0.31	-1.2
2,697,666	-		GFF2678	0.31	-1.7
2,697,691	-		GFF2678	0.32	-0.6
2,697,696	-		GFF2678	0.33	-0.4
2,697,702	+		GFF2678	0.33	-0.2
2,697,733	+		GFF2678	0.34	+1.2
2,697,733	+		GFF2678	0.34	+0.3
2,697,733	+		GFF2678	0.34	+0.4
2,697,736	-		GFF2678	0.34	+0.7
2,697,736	-		GFF2678	0.34	+0.1
2,697,737	-		GFF2678	0.34	-0.5
2,697,741	-		GFF2678	0.35	+0.1
2,697,741	-		GFF2678	0.35	-1.3
2,697,753	+		GFF2678	0.35	-1.0
2,697,753	+		GFF2678	0.35	-2.0
2,697,753	+		GFF2678	0.35	-0.2
2,697,753	+		GFF2678	0.35	+0.6
2,697,753	+		GFF2678	0.35	-1.8
2,697,753	+		GFF2678	0.35	-1.2
2,697,757	-		GFF2678	0.35	+0.5
2,697,761	-		GFF2678	0.35	-0.5
2,697,761	-		GFF2678	0.35	+0.7
2,697,761	-		GFF2678	0.35	-0.2
2,697,761	-		GFF2678	0.35	-0.7