Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF240 and GFF241 are separated by 65 nucleotides GFF241 and GFF242 are separated by 142 nucleotides GFF242 and GFF243 overlap by 8 nucleotides
GFF240 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 244,408 to 245,916
GFF240
GFF241 - hypothetical protein, at 245,982 to 246,404
GFF241
GFF242 - Ribonuclease T2 family protein, at 246,547 to 247,254
GFF242
GFF243 - Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19), at 247,247 to 248,101
GFF243
Position (kb) 245
246
247 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 244.983 kb on + strand, within GFF240 at 245.038 kb on - strand, within GFF240 at 245.056 kb on + strand, within GFF240 at 245.059 kb on + strand, within GFF240 at 245.067 kb on - strand, within GFF240 at 245.068 kb on + strand, within GFF240 at 245.074 kb on - strand, within GFF240 at 245.087 kb on + strand, within GFF240 at 245.133 kb on + strand, within GFF240 at 245.134 kb on + strand, within GFF240 at 245.150 kb on + strand, within GFF240 at 245.150 kb on + strand, within GFF240 at 245.158 kb on - strand, within GFF240 at 245.158 kb on - strand, within GFF240 at 245.158 kb on - strand, within GFF240 at 245.197 kb on + strand, within GFF240 at 245.205 kb on - strand, within GFF240 at 245.205 kb on - strand, within GFF240 at 245.207 kb on + strand, within GFF240 at 245.211 kb on + strand, within GFF240 at 245.212 kb on + strand, within GFF240 at 245.212 kb on + strand, within GFF240 at 245.212 kb on + strand, within GFF240 at 245.223 kb on + strand, within GFF240 at 245.223 kb on + strand, within GFF240 at 245.223 kb on + strand, within GFF240 at 245.236 kb on - strand, within GFF240 at 245.236 kb on - strand, within GFF240 at 245.236 kb on - strand, within GFF240 at 245.254 kb on - strand, within GFF240 at 245.297 kb on - strand, within GFF240 at 245.322 kb on - strand, within GFF240 at 245.322 kb on - strand, within GFF240 at 245.370 kb on + strand, within GFF240 at 245.400 kb on + strand, within GFF240 at 245.400 kb on + strand, within GFF240 at 245.400 kb on + strand, within GFF240 at 245.415 kb on + strand, within GFF240 at 245.423 kb on - strand, within GFF240 at 245.423 kb on - strand, within GFF240 at 245.423 kb on - strand, within GFF240 at 245.423 kb on - strand, within GFF240 at 245.439 kb on + strand, within GFF240 at 245.439 kb on + strand, within GFF240 at 245.442 kb on - strand, within GFF240 at 245.447 kb on - strand, within GFF240 at 245.449 kb on + strand, within GFF240 at 245.457 kb on - strand, within GFF240 at 245.457 kb on - strand, within GFF240 at 245.493 kb on + strand, within GFF240 at 245.524 kb on + strand, within GFF240 at 245.524 kb on + strand, within GFF240 at 245.524 kb on + strand, within GFF240 at 245.552 kb on + strand, within GFF240 at 245.561 kb on + strand, within GFF240 at 245.569 kb on - strand, within GFF240 at 245.608 kb on - strand, within GFF240 at 245.614 kb on - strand, within GFF240 at 245.632 kb on + strand, within GFF240 at 245.632 kb on + strand, within GFF240 at 245.632 kb on + strand, within GFF240 at 245.632 kb on + strand, within GFF240 at 245.632 kb on + strand, within GFF240 at 245.632 kb on + strand, within GFF240 at 245.632 kb on + strand, within GFF240 at 245.632 kb on + strand, within GFF240 at 245.640 kb on - strand, within GFF240 at 245.640 kb on - strand, within GFF240 at 245.640 kb on - strand, within GFF240 at 245.640 kb on - strand, within GFF240 at 245.640 kb on - strand, within GFF240 at 245.640 kb on - strand, within GFF240 at 245.645 kb on - strand, within GFF240 at 245.647 kb on + strand, within GFF240 at 245.649 kb on + strand, within GFF240 at 245.691 kb on - strand, within GFF240 at 245.700 kb on + strand, within GFF240 at 245.708 kb on - strand, within GFF240 at 245.720 kb on + strand, within GFF240 at 245.725 kb on + strand, within GFF240 at 245.730 kb on + strand, within GFF240 at 245.730 kb on + strand, within GFF240 at 245.730 kb on + strand, within GFF240 at 245.745 kb on + strand, within GFF240 at 245.795 kb on - strand at 245.796 kb on - strand at 245.806 kb on - strand at 245.806 kb on - strand at 245.806 kb on - strand at 245.828 kb on - strand at 245.847 kb on + strand at 245.870 kb on - strand at 245.884 kb on + strand at 245.885 kb on + strand at 245.904 kb on - strand at 245.906 kb on + strand at 245.911 kb on + strand at 245.911 kb on + strand at 245.911 kb on + strand at 245.911 kb on + strand at 245.914 kb on - strand at 245.931 kb on - strand at 245.931 kb on - strand at 245.955 kb on - strand at 245.957 kb on + strand at 245.962 kb on + strand at 245.964 kb on + strand at 245.964 kb on + strand at 245.964 kb on + strand at 245.964 kb on + strand at 245.964 kb on + strand at 245.964 kb on + strand at 245.964 kb on + strand at 245.964 kb on + strand at 245.964 kb on + strand at 245.964 kb on + strand at 245.965 kb on - strand at 245.972 kb on - strand at 245.972 kb on - strand at 245.972 kb on - strand at 245.972 kb on - strand at 245.972 kb on - strand at 245.974 kb on + strand at 245.982 kb on - strand at 246.023 kb on - strand at 246.072 kb on - strand, within GFF241 at 246.084 kb on + strand, within GFF241 at 246.084 kb on + strand, within GFF241 at 246.092 kb on - strand, within GFF241 at 246.092 kb on - strand, within GFF241 at 246.107 kb on + strand, within GFF241 at 246.129 kb on + strand, within GFF241 at 246.137 kb on - strand, within GFF241 at 246.137 kb on - strand, within GFF241 at 246.137 kb on - strand, within GFF241 at 246.143 kb on + strand, within GFF241 at 246.151 kb on - strand, within GFF241 at 246.156 kb on - strand, within GFF241 at 246.162 kb on + strand, within GFF241 at 246.193 kb on + strand, within GFF241 at 246.193 kb on + strand, within GFF241 at 246.217 kb on + strand, within GFF241 at 246.217 kb on + strand, within GFF241 at 246.253 kb on + strand, within GFF241 at 246.278 kb on + strand, within GFF241 at 246.278 kb on + strand, within GFF241 at 246.286 kb on - strand, within GFF241 at 246.360 kb on - strand, within GFF241 at 246.368 kb on - strand at 246.379 kb on + strand at 246.403 kb on + strand at 246.411 kb on - strand at 246.419 kb on - strand at 246.457 kb on + strand at 246.457 kb on + strand at 246.457 kb on + strand at 246.465 kb on - strand at 246.465 kb on - strand at 246.465 kb on - strand at 246.467 kb on + strand at 246.467 kb on + strand at 246.475 kb on - strand at 246.477 kb on + strand at 246.485 kb on - strand at 246.485 kb on - strand at 246.491 kb on + strand at 246.492 kb on - strand at 246.499 kb on - strand at 246.511 kb on - strand at 246.518 kb on - strand at 246.551 kb on - strand at 246.551 kb on - strand at 246.552 kb on - strand at 246.553 kb on + strand at 246.563 kb on + strand at 246.563 kb on + strand at 246.581 kb on - strand at 246.595 kb on + strand at 246.635 kb on + strand, within GFF242 at 246.635 kb on + strand, within GFF242 at 246.640 kb on + strand, within GFF242 at 246.640 kb on + strand, within GFF242 at 246.640 kb on + strand, within GFF242 at 246.640 kb on + strand, within GFF242 at 246.641 kb on - strand, within GFF242 at 246.643 kb on - strand, within GFF242 at 246.648 kb on - strand, within GFF242 at 246.648 kb on - strand, within GFF242 at 246.648 kb on - strand, within GFF242 at 246.648 kb on - strand, within GFF242 at 246.655 kb on - strand, within GFF242 at 246.665 kb on - strand, within GFF242 at 246.704 kb on + strand, within GFF242 at 246.704 kb on + strand, within GFF242 at 246.704 kb on + strand, within GFF242 at 246.704 kb on + strand, within GFF242 at 246.706 kb on - strand, within GFF242 at 246.709 kb on + strand, within GFF242 at 246.709 kb on + strand, within GFF242 at 246.712 kb on - strand, within GFF242 at 246.712 kb on - strand, within GFF242 at 246.712 kb on - strand, within GFF242 at 246.712 kb on - strand, within GFF242 at 246.712 kb on - strand, within GFF242 at 246.719 kb on + strand, within GFF242 at 246.727 kb on - strand, within GFF242 at 246.731 kb on + strand, within GFF242 at 246.731 kb on + strand, within GFF242 at 246.739 kb on - strand, within GFF242 at 246.777 kb on + strand, within GFF242 at 246.777 kb on + strand, within GFF242 at 246.785 kb on - strand, within GFF242 at 246.790 kb on - strand, within GFF242 at 246.792 kb on + strand, within GFF242 at 246.792 kb on + strand, within GFF242 at 246.795 kb on - strand, within GFF242 at 246.800 kb on - strand, within GFF242 at 246.800 kb on - strand, within GFF242 at 246.802 kb on - strand, within GFF242 at 246.805 kb on - strand, within GFF242 at 246.843 kb on + strand, within GFF242 at 246.858 kb on + strand, within GFF242 at 246.865 kb on - strand, within GFF242 at 246.865 kb on - strand, within GFF242 at 246.874 kb on - strand, within GFF242 at 246.885 kb on + strand, within GFF242 at 246.893 kb on - strand, within GFF242 at 246.899 kb on + strand, within GFF242 at 246.904 kb on - strand, within GFF242 at 246.923 kb on - strand, within GFF242 at 246.924 kb on - strand, within GFF242 at 246.962 kb on - strand, within GFF242 at 246.978 kb on - strand, within GFF242 at 246.983 kb on + strand, within GFF242 at 246.999 kb on + strand, within GFF242 at 246.999 kb on + strand, within GFF242 at 247.030 kb on + strand, within GFF242 at 247.032 kb on + strand, within GFF242 at 247.077 kb on + strand, within GFF242 at 247.087 kb on - strand, within GFF242 at 247.130 kb on - strand, within GFF242 at 247.131 kb on + strand, within GFF242 at 247.131 kb on + strand, within GFF242 at 247.137 kb on + strand, within GFF242 at 247.169 kb on + strand, within GFF242 at 247.187 kb on + strand at 247.187 kb on + strand at 247.193 kb on + strand at 247.193 kb on + strand at 247.197 kb on + strand at 247.198 kb on + strand at 247.208 kb on + strand at 247.222 kb on - strand at 247.237 kb on - strand at 247.252 kb on - strand at 247.257 kb on + strand at 247.257 kb on + strand at 247.265 kb on - strand at 247.274 kb on + strand at 247.284 kb on + strand at 247.285 kb on + strand at 247.321 kb on - strand at 247.321 kb on - strand at 247.359 kb on - strand, within GFF243 at 247.388 kb on - strand, within GFF243 at 247.392 kb on + strand, within GFF243 at 247.392 kb on + strand, within GFF243 at 247.402 kb on + strand, within GFF243 at 247.402 kb on + strand, within GFF243
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 244,983 + GFF240 0.38 +0.1 245,038 - GFF240 0.42 +1.1 245,056 + GFF240 0.43 +0.9 245,059 + GFF240 0.43 +1.6 245,067 - GFF240 0.44 +0.6 245,068 + GFF240 0.44 -1.3 245,074 - GFF240 0.44 -0.3 245,087 + GFF240 0.45 -0.6 245,133 + GFF240 0.48 -0.1 245,134 + GFF240 0.48 +0.9 245,150 + GFF240 0.49 +0.5 245,150 + GFF240 0.49 -0.1 245,158 - GFF240 0.50 -0.4 245,158 - GFF240 0.50 -0.5 245,158 - GFF240 0.50 +0.4 245,197 + GFF240 0.52 +0.1 245,205 - GFF240 0.53 -0.2 245,205 - GFF240 0.53 -0.1 245,207 + GFF240 0.53 +1.2 245,211 + GFF240 0.53 -0.1 245,212 + GFF240 0.53 +0.3 245,212 + GFF240 0.53 +1.2 245,212 + GFF240 0.53 -0.4 245,223 + GFF240 0.54 +0.4 245,223 + GFF240 0.54 -0.6 245,223 + GFF240 0.54 +1.4 245,236 - GFF240 0.55 -1.5 245,236 - GFF240 0.55 -0.2 245,236 - GFF240 0.55 +2.2 245,254 - GFF240 0.56 +0.9 245,297 - GFF240 0.59 +0.5 245,322 - GFF240 0.61 +0.1 245,322 - GFF240 0.61 -0.7 245,370 + GFF240 0.64 -1.2 245,400 + GFF240 0.66 +0.7 245,400 + GFF240 0.66 +0.8 245,400 + GFF240 0.66 -1.4 245,415 + GFF240 0.67 +0.4 245,423 - GFF240 0.67 +0.9 245,423 - GFF240 0.67 +0.5 245,423 - GFF240 0.67 +0.5 245,423 - GFF240 0.67 -0.8 245,439 + GFF240 0.68 -1.6 245,439 + GFF240 0.68 +0.4 245,442 - GFF240 0.69 -1.8 245,447 - GFF240 0.69 +0.8 245,449 + GFF240 0.69 -0.3 245,457 - GFF240 0.70 -2.0 245,457 - GFF240 0.70 -1.3 245,493 + GFF240 0.72 +0.1 245,524 + GFF240 0.74 -1.0 245,524 + GFF240 0.74 -0.5 245,524 + GFF240 0.74 -0.0 245,552 + GFF240 0.76 -0.6 245,561 + GFF240 0.76 -1.2 245,569 - GFF240 0.77 +1.3 245,608 - GFF240 0.80 +0.9 245,614 - GFF240 0.80 -2.2 245,632 + GFF240 0.81 -1.2 245,632 + GFF240 0.81 -1.9 245,632 + GFF240 0.81 +0.2 245,632 + GFF240 0.81 -0.1 245,632 + GFF240 0.81 -0.5 245,632 + GFF240 0.81 -0.7 245,632 + GFF240 0.81 -0.4 245,632 + GFF240 0.81 +0.6 245,640 - GFF240 0.82 +1.1 245,640 - GFF240 0.82 -1.2 245,640 - GFF240 0.82 +2.1 245,640 - GFF240 0.82 -1.2 245,640 - GFF240 0.82 +1.0 245,640 - GFF240 0.82 -0.1 245,645 - GFF240 0.82 +1.0 245,647 + GFF240 0.82 -1.2 245,649 + GFF240 0.82 -1.4 245,691 - GFF240 0.85 +0.8 245,700 + GFF240 0.86 +1.0 245,708 - GFF240 0.86 +0.5 245,720 + GFF240 0.87 +0.4 245,725 + GFF240 0.87 -2.1 245,730 + GFF240 0.88 +0.1 245,730 + GFF240 0.88 +1.3 245,730 + GFF240 0.88 +1.1 245,745 + GFF240 0.89 +2.4 245,795 - -0.4 245,796 - +0.2 245,806 - -0.5 245,806 - -1.5 245,806 - -2.1 245,828 - +1.1 245,847 + -1.7 245,870 - +0.4 245,884 + +0.4 245,885 + -1.1 245,904 - +0.7 245,906 + +0.8 245,911 + -0.4 245,911 + -2.7 245,911 + -0.9 245,911 + +0.3 245,914 - +0.3 245,931 - -0.8 245,931 - +0.2 245,955 - +0.2 245,957 + +0.2 245,962 + -3.4 245,964 + -2.0 245,964 + +0.2 245,964 + +0.1 245,964 + -1.1 245,964 + -0.4 245,964 + -1.5 245,964 + +1.0 245,964 + -0.7 245,964 + -0.8 245,964 + -0.9 245,965 - -0.7 245,972 - +0.7 245,972 - +0.8 245,972 - -1.2 245,972 - +0.1 245,972 - -0.9 245,974 + -1.4 245,982 - +0.1 246,023 - -1.5 246,072 - GFF241 0.21 +0.6 246,084 + GFF241 0.24 -0.2 246,084 + GFF241 0.24 +0.9 246,092 - GFF241 0.26 -0.4 246,092 - GFF241 0.26 -0.3 246,107 + GFF241 0.30 +0.3 246,129 + GFF241 0.35 +1.1 246,137 - GFF241 0.37 +0.1 246,137 - GFF241 0.37 -2.1 246,137 - GFF241 0.37 -0.2 246,143 + GFF241 0.38 +0.5 246,151 - GFF241 0.40 -1.2 246,156 - GFF241 0.41 -1.3 246,162 + GFF241 0.43 -1.4 246,193 + GFF241 0.50 +0.6 246,193 + GFF241 0.50 -2.2 246,217 + GFF241 0.56 -1.0 246,217 + GFF241 0.56 -0.4 246,253 + GFF241 0.64 +1.6 246,278 + GFF241 0.70 -0.7 246,278 + GFF241 0.70 -0.3 246,286 - GFF241 0.72 -1.4 246,360 - GFF241 0.89 -0.3 246,368 - +0.1 246,379 + -1.3 246,403 + -0.0 246,411 - -0.4 246,419 - -0.6 246,457 + +0.2 246,457 + -0.5 246,457 + +0.8 246,465 - -1.2 246,465 - +1.1 246,465 - -0.2 246,467 + +1.2 246,467 + -0.8 246,475 - -0.1 246,477 + -0.2 246,485 - -0.1 246,485 - -0.6 246,491 + +1.3 246,492 - +0.5 246,499 - -1.4 246,511 - +0.4 246,518 - +1.4 246,551 - -0.3 246,551 - +1.1 246,552 - +0.0 246,553 + -0.4 246,563 + -0.0 246,563 + +0.1 246,581 - -2.0 246,595 + +0.6 246,635 + GFF242 0.12 -1.6 246,635 + GFF242 0.12 +0.7 246,640 + GFF242 0.13 +0.5 246,640 + GFF242 0.13 -0.6 246,640 + GFF242 0.13 -1.0 246,640 + GFF242 0.13 -2.5 246,641 - GFF242 0.13 -0.6 246,643 - GFF242 0.14 -1.0 246,648 - GFF242 0.14 +0.5 246,648 - GFF242 0.14 -0.0 246,648 - GFF242 0.14 -0.7 246,648 - GFF242 0.14 -0.2 246,655 - GFF242 0.15 +0.9 246,665 - GFF242 0.17 +1.2 246,704 + GFF242 0.22 +0.1 246,704 + GFF242 0.22 -0.9 246,704 + GFF242 0.22 -0.7 246,704 + GFF242 0.22 -0.7 246,706 - GFF242 0.22 -0.2 246,709 + GFF242 0.23 -1.0 246,709 + GFF242 0.23 -0.1 246,712 - GFF242 0.23 +0.5 246,712 - GFF242 0.23 -1.7 246,712 - GFF242 0.23 +0.7 246,712 - GFF242 0.23 -0.1 246,712 - GFF242 0.23 +0.3 246,719 + GFF242 0.24 +1.0 246,727 - GFF242 0.25 -1.7 246,731 + GFF242 0.26 +0.2 246,731 + GFF242 0.26 -0.6 246,739 - GFF242 0.27 +0.1 246,777 + GFF242 0.32 -1.2 246,777 + GFF242 0.32 -0.0 246,785 - GFF242 0.34 -1.4 246,790 - GFF242 0.34 -0.2 246,792 + GFF242 0.35 -0.8 246,792 + GFF242 0.35 -0.7 246,795 - GFF242 0.35 +1.0 246,800 - GFF242 0.36 -0.5 246,800 - GFF242 0.36 -0.6 246,802 - GFF242 0.36 +0.3 246,805 - GFF242 0.36 +1.0 246,843 + GFF242 0.42 +1.2 246,858 + GFF242 0.44 +0.9 246,865 - GFF242 0.45 +1.0 246,865 - GFF242 0.45 -0.7 246,874 - GFF242 0.46 -0.8 246,885 + GFF242 0.48 +0.2 246,893 - GFF242 0.49 -0.3 246,899 + GFF242 0.50 -0.0 246,904 - GFF242 0.50 -1.0 246,923 - GFF242 0.53 +0.1 246,924 - GFF242 0.53 -1.5 246,962 - GFF242 0.59 -0.5 246,978 - GFF242 0.61 -2.2 246,983 + GFF242 0.62 +0.5 246,999 + GFF242 0.64 +0.9 246,999 + GFF242 0.64 +0.1 247,030 + GFF242 0.68 +0.0 247,032 + GFF242 0.69 -1.2 247,077 + GFF242 0.75 +0.4 247,087 - GFF242 0.76 +0.4 247,130 - GFF242 0.82 -1.8 247,131 + GFF242 0.82 +0.7 247,131 + GFF242 0.82 +0.7 247,137 + GFF242 0.83 +0.8 247,169 + GFF242 0.88 +1.1 247,187 + +0.0 247,187 + +0.3 247,193 + +0.7 247,193 + -0.2 247,197 + -0.3 247,198 + -0.9 247,208 + +0.6 247,222 - -0.9 247,237 - +1.6 247,252 - -2.8 247,257 + +0.2 247,257 + -1.3 247,265 - -1.4 247,274 + -1.5 247,284 + -1.5 247,285 + -1.9 247,321 - -1.3 247,321 - -1.4 247,359 - GFF243 0.13 -1.9 247,388 - GFF243 0.16 -1.6 247,392 + GFF243 0.17 -2.2 247,392 + GFF243 0.17 -2.5 247,402 + GFF243 0.18 -0.7 247,402 + GFF243 0.18 -2.0
Or see this region's nucleotide sequence