Strain Fitness in Sphingobium sp. HT1-2 around GFF2398

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,418,582	+				-2.0
2,418,587	+				-0.6
2,418,592	+				+0.5
2,418,592	+				+0.1
2,418,592	+				-0.6
2,418,592	+				+0.2
2,418,592	+				+0.3
2,418,599	-				+0.4
2,418,599	-				+0.8
2,418,599	-				+1.2
2,418,599	-				+0.2
2,418,599	-				-1.8
2,418,599	-				-1.1
2,418,599	-				+0.5
2,418,600	-				+0.6
2,418,600	-				-0.2
2,418,600	-				-0.6
2,418,600	-				-1.4
2,418,600	-				+0.0
2,418,600	-				+1.1
2,418,600	-				-1.5
2,418,600	-				+0.9
2,418,600	-				-0.3
2,418,605	-				-1.6
2,418,621	+				+1.1
2,418,636	-		GFF2397	0.10	+1.1
2,418,636	-		GFF2397	0.10	-1.5
2,418,636	-		GFF2397	0.10	-0.8
2,418,637	+		GFF2397	0.11	-0.2
2,418,645	-		GFF2397	0.11	+1.2
2,418,655	-		GFF2397	0.12	+0.6
2,418,756	+		GFF2397	0.22	-1.2
2,418,764	-		GFF2397	0.23	-1.2
2,418,764	-		GFF2397	0.23	+0.2
2,418,764	-		GFF2397	0.23	-0.5
2,418,793	+		GFF2397	0.26	-0.6
2,418,801	-		GFF2397	0.27	+0.9
2,418,835	+		GFF2397	0.30	-0.3
2,418,837	+		GFF2397	0.30	-0.2
2,418,850	+		GFF2397	0.31	-1.8
2,418,850	+		GFF2397	0.31	-0.9
2,418,850	+		GFF2397	0.31	-0.4
2,418,850	+		GFF2397	0.31	-1.1
2,418,850	+		GFF2397	0.31	+0.9
2,418,850	+		GFF2397	0.31	-0.8
2,418,850	+		GFF2397	0.31	-0.1
2,418,850	+		GFF2397	0.31	-1.9
2,418,850	+		GFF2397	0.31	-0.4
2,418,850	+		GFF2397	0.31	+1.0
2,418,850	+		GFF2397	0.31	-0.2
2,418,855	+		GFF2397	0.32	+1.4
2,418,855	+		GFF2397	0.32	-1.4
2,418,858	-		GFF2397	0.32	+0.2
2,418,858	-		GFF2397	0.32	-2.3
2,418,858	-		GFF2397	0.32	-1.2
2,418,858	-		GFF2397	0.32	-1.1
2,418,858	-		GFF2397	0.32	-2.9
2,418,858	-		GFF2397	0.32	-2.3
2,418,858	-		GFF2397	0.32	-1.2
2,418,860	+		GFF2397	0.32	+0.7
2,418,865	+		GFF2397	0.33	+0.2
2,418,901	-		GFF2397	0.36	-0.5
2,418,918	-		GFF2397	0.38	+1.1
2,418,920	+		GFF2397	0.38	-0.3
2,418,920	+		GFF2397	0.38	+0.2
2,418,920	+		GFF2397	0.38	-1.5
2,418,920	+		GFF2397	0.38	+0.8
2,418,928	-		GFF2397	0.39	-2.0
2,418,928	-		GFF2397	0.39	-1.6
2,418,941	+		GFF2397	0.40	-2.2
2,418,941	+		GFF2397	0.40	-0.4
2,418,947	+		GFF2397	0.41	+0.2
2,418,947	+		GFF2397	0.41	+0.8
2,418,963	-		GFF2397	0.42	+0.4
2,418,967	+		GFF2397	0.43	+0.2
2,418,968	-		GFF2397	0.43	+0.2
2,418,973	-		GFF2397	0.43	-1.4
2,418,975	-		GFF2397	0.43	+0.7
2,418,981	-		GFF2397	0.44	+0.4
2,418,981	-		GFF2397	0.44	-0.1
2,418,985	-		GFF2397	0.44	-0.3
2,418,991	-		GFF2397	0.45	-1.4
2,419,000	+		GFF2397	0.46	-1.9
2,419,000	+		GFF2397	0.46	-0.7
2,419,021	-		GFF2397	0.48	-0.5
2,419,054	+		GFF2397	0.51	-2.2
2,419,085	+		GFF2397	0.54	+0.3
2,419,093	-		GFF2397	0.55	-0.6
2,419,158	-		GFF2397	0.61	+0.9
2,419,275	+		GFF2397	0.73	+0.3
2,419,292	-		GFF2397	0.74	-1.0
2,419,309	+		GFF2397	0.76	-1.1
2,419,314	+		GFF2397	0.76	-2.1
2,419,314	+		GFF2397	0.76	-0.7
2,419,319	+		GFF2397	0.77	-0.5
2,419,322	-		GFF2397	0.77	-1.8
2,419,322	-		GFF2397	0.77	+1.5
2,419,351	+		GFF2397	0.80	+0.7
2,419,351	+		GFF2397	0.80	+1.0
2,419,351	+		GFF2397	0.80	-0.5
2,419,351	+		GFF2397	0.80	-2.6
2,419,359	-		GFF2397	0.81	+0.4
2,419,359	-		GFF2397	0.81	-0.3
2,419,359	-		GFF2397	0.81	-1.4
2,419,359	-		GFF2397	0.81	+2.1
2,419,359	-		GFF2397	0.81	+0.2
2,419,361	+		GFF2397	0.81	-0.2
2,419,389	+		GFF2397	0.84	-0.1
2,419,389	+		GFF2397	0.84	-0.4
2,419,397	-		GFF2397	0.84	-1.9
2,419,397	-		GFF2397	0.84	-0.7
2,419,397	-		GFF2397	0.84	-0.7
2,419,397	-		GFF2397	0.84	+0.8
2,419,425	+		GFF2397	0.87	-2.0
2,419,440	+		GFF2397	0.89	-0.7
2,419,441	-		GFF2397	0.89	-0.7
2,419,468	+				+0.6
2,419,510	+				+0.3
2,419,510	+				+0.7
2,419,514	-				-0.6
2,419,542	-				+0.4
2,419,544	+				-0.0
2,419,544	+				-0.6
2,419,544	+				-0.4
2,419,544	+				-0.5
2,419,544	+				-1.7
2,419,544	+				+0.3
2,419,544	+				-1.2
2,419,544	+				-0.9
2,419,544	+				-0.8
2,419,544	+				-0.3
2,419,544	+				-0.5
2,419,552	-				-0.7
2,419,552	-				+0.1
2,419,552	-				+0.4
2,419,552	-				-0.5
2,419,552	-				+1.3
2,419,552	-				-1.5
2,419,552	-				-0.3
2,419,552	-				+0.1
2,419,552	-				-0.4
2,419,552	-				-1.4
2,419,552	-				+0.1
2,419,552	-				+0.5
2,419,552	-				+0.4
2,419,552	-				-0.4
2,419,558	+				-1.3
2,419,558	+				-2.3
2,419,562	-				-1.3
2,419,628	+				+0.1
2,419,689	-		GFF2398	0.14	-0.1
2,419,695	+		GFF2398	0.14	-0.3
2,419,720	-		GFF2398	0.18	-1.8
2,419,720	-		GFF2398	0.18	+0.4
2,419,754	-		GFF2398	0.22	-0.1
2,419,756	+		GFF2398	0.22	+0.2
2,419,764	-		GFF2398	0.23	+0.2
2,419,784	+		GFF2398	0.26	-0.2
2,419,784	+		GFF2398	0.26	-0.4
2,419,806	-		GFF2398	0.29	-0.1
2,419,808	+		GFF2398	0.29	-0.9
2,419,816	-		GFF2398	0.30	+0.5
2,419,847	+		GFF2398	0.34	+0.6
2,419,855	-		GFF2398	0.35	-0.4
2,419,855	-		GFF2398	0.35	-0.2
2,419,855	-		GFF2398	0.35	-0.9
2,419,855	-		GFF2398	0.35	+0.7
2,419,870	+		GFF2398	0.37	-0.1
2,419,878	-		GFF2398	0.38	-0.9
2,419,878	-		GFF2398	0.38	+0.7
2,419,897	-		GFF2398	0.40	-0.0
2,419,897	-		GFF2398	0.40	+1.1
2,419,898	-		GFF2398	0.41	-1.9
2,419,901	+		GFF2398	0.41	-0.7
2,419,916	+		GFF2398	0.43	+1.6
2,419,928	+		GFF2398	0.44	-0.7
2,419,934	+		GFF2398	0.45	-0.3
2,419,934	+		GFF2398	0.45	+0.4
2,419,934	+		GFF2398	0.45	-1.1
2,419,935	-		GFF2398	0.45	+0.2
2,419,942	-		GFF2398	0.46	+0.3
2,419,949	-		GFF2398	0.47	-0.2
2,419,950	+		GFF2398	0.47	-1.5
2,419,958	-		GFF2398	0.48	-1.5
2,419,958	-		GFF2398	0.48	-0.2
2,419,987	+		GFF2398	0.52	-0.2
2,419,995	-		GFF2398	0.53	-0.3
2,420,028	+		GFF2398	0.57	+0.6
2,420,031	-		GFF2398	0.58	-0.9
2,420,031	-		GFF2398	0.58	-2.3
2,420,033	+		GFF2398	0.58	-0.0
2,420,041	+		GFF2398	0.59	+0.3
2,420,065	-		GFF2398	0.62	-2.4
2,420,065	-		GFF2398	0.62	-1.2
2,420,072	+		GFF2398	0.63	+0.1
2,420,084	-		GFF2398	0.64	+0.1
2,420,084	-		GFF2398	0.64	+0.9
2,420,100	+		GFF2398	0.66	+0.1
2,420,128	-		GFF2398	0.70	-1.3
2,420,229	+		GFF2398	0.83	+0.3
2,420,279	+		GFF2398	0.89	-0.9
2,420,279	+		GFF2398	0.89	+0.5
2,420,287	-				+0.4
2,420,287	-				+1.0
2,420,287	-				+0.1
2,420,300	+				-1.1
2,420,324	-				+1.4
2,420,324	-				-0.4
2,420,331	+				-2.0
2,420,339	-				+0.2
2,420,344	-				-1.2
2,420,344	-				-0.1
2,420,357	+				+0.5
2,420,359	+				-0.6
2,420,359	+				-1.3
2,420,375	+				+0.2
2,420,375	+				-0.9
2,420,394	+				+0.3
2,420,395	+				+0.2
2,420,395	+				-2.2
2,420,395	+				-0.4
2,420,395	+				-0.0
2,420,403	-				+0.7
2,420,403	-				+0.3
2,420,403	-				+0.5
2,420,403	-				+0.8
2,420,420	+				-0.3
2,420,456	-				-1.6
2,420,487	-				+0.7
2,420,493	+				-0.3
2,420,493	+				-0.8
2,420,501	-				+0.5
2,420,522	-				-0.0
2,421,004	-				-1.4
2,421,010	+				-0.2
2,421,010	+				+0.0
2,421,012	+				-1.3
2,421,012	+				-1.3
2,421,012	+				-0.6
2,421,012	+				-0.8
2,421,020	-				-0.5
2,421,020	-				-1.6
2,421,037	+				-0.2
2,421,040	-				-0.3
2,421,045	-				+0.5
2,421,045	-				-1.0
2,421,049	-				+0.5
2,421,062	-				+0.6
2,421,064	-				-0.3
2,421,074	+				-1.5
2,421,074	+				-0.3
2,421,074	+				+0.7
2,421,074	+				+0.2
2,421,074	+				+0.4
2,421,074	+				+0.3
2,421,077	-				+1.2
2,421,082	-				+0.8
2,421,082	-				+1.1
2,421,082	-				+0.9
2,421,082	-				-0.0
2,421,082	-				-0.2
2,421,082	-				-1.7
2,421,082	-				-0.3
2,421,082	-				+0.3
2,421,082	-				+1.8
2,421,082	-				-0.7
2,421,082	-				+0.3
2,421,082	-				-1.8
2,421,082	-				-0.5
2,421,082	-				+0.5
2,421,087	-				+0.2
2,421,105	+		GFF2400	0.12	-0.5
2,421,108	-		GFF2400	0.12	+0.7
2,421,122	+		GFF2400	0.14	+0.7
2,421,122	+		GFF2400	0.14	-0.8
2,421,125	-		GFF2400	0.14	-1.6
2,421,126	-		GFF2400	0.14	-0.6
2,421,130	-		GFF2400	0.15	-1.2
2,421,130	-		GFF2400	0.15	-0.3
2,421,130	-		GFF2400	0.15	-1.2
2,421,130	-		GFF2400	0.15	-0.2
2,421,130	-		GFF2400	0.15	-1.7
2,421,130	-		GFF2400	0.15	+0.2
2,421,130	-		GFF2400	0.15	+0.7
2,421,130	-		GFF2400	0.15	+0.5
2,421,135	+		GFF2400	0.15	-1.0
2,421,158	+		GFF2400	0.18	+0.9
2,421,164	+		GFF2400	0.18	-0.8
2,421,172	-		GFF2400	0.19	+1.0
2,421,172	-		GFF2400	0.19	+1.4
2,421,172	-		GFF2400	0.19	-1.0
2,421,172	-		GFF2400	0.19	-0.4
2,421,260	-		GFF2400	0.29	+0.3
2,421,292	-		GFF2400	0.32	-0.3
2,421,292	-		GFF2400	0.32	-1.7