Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF236 and GFF237 are separated by 72 nucleotides GFF237 and GFF238 are separated by 169 nucleotides GFF238 and GFF239 are separated by 15 nucleotides
GFF236 - LSU ribosomal protein L10p (P0), at 240,256 to 240,771
GFF236
GFF237 - LSU ribosomal protein L7p/L12p (P1/P2), at 240,844 to 241,218
GFF237
GFF238 - putative carboxylesterase, at 241,388 to 242,809
GFF238
GFF239 - hypothetical protein, at 242,825 to 244,264
GFF239
Position (kb) 241
242
243 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 241.228 kb on + strand at 241.292 kb on - strand at 241.348 kb on - strand at 241.365 kb on - strand at 241.365 kb on - strand at 241.388 kb on + strand at 241.417 kb on - strand at 241.419 kb on + strand at 241.424 kb on - strand at 241.429 kb on - strand at 241.431 kb on + strand at 241.434 kb on + strand at 241.434 kb on - strand at 241.442 kb on - strand at 241.442 kb on - strand at 241.493 kb on + strand at 241.493 kb on + strand at 241.500 kb on - strand at 241.500 kb on - strand at 241.500 kb on - strand at 241.501 kb on - strand at 241.501 kb on - strand at 241.501 kb on - strand at 241.508 kb on + strand at 241.508 kb on + strand at 241.508 kb on + strand at 241.552 kb on + strand, within GFF238 at 241.553 kb on + strand, within GFF238 at 241.554 kb on - strand, within GFF238 at 241.561 kb on - strand, within GFF238 at 241.593 kb on + strand, within GFF238 at 241.600 kb on + strand, within GFF238 at 241.608 kb on - strand, within GFF238 at 241.616 kb on + strand, within GFF238 at 241.620 kb on + strand, within GFF238 at 241.628 kb on - strand, within GFF238 at 241.637 kb on + strand, within GFF238 at 241.647 kb on + strand, within GFF238 at 241.664 kb on + strand, within GFF238 at 241.701 kb on - strand, within GFF238 at 241.709 kb on + strand, within GFF238 at 241.722 kb on - strand, within GFF238 at 241.722 kb on - strand, within GFF238 at 241.743 kb on - strand, within GFF238 at 241.763 kb on - strand, within GFF238 at 241.774 kb on + strand, within GFF238 at 241.774 kb on + strand, within GFF238 at 241.777 kb on - strand, within GFF238 at 241.782 kb on - strand, within GFF238 at 241.782 kb on - strand, within GFF238 at 241.812 kb on - strand, within GFF238 at 241.815 kb on + strand, within GFF238 at 241.816 kb on + strand, within GFF238 at 241.817 kb on + strand, within GFF238 at 241.817 kb on + strand, within GFF238 at 241.817 kb on + strand, within GFF238 at 241.820 kb on - strand, within GFF238 at 241.825 kb on - strand, within GFF238 at 241.825 kb on - strand, within GFF238 at 241.825 kb on - strand, within GFF238 at 241.843 kb on + strand, within GFF238 at 241.851 kb on - strand, within GFF238 at 241.861 kb on - strand, within GFF238 at 241.869 kb on + strand, within GFF238 at 241.869 kb on + strand, within GFF238 at 241.870 kb on - strand, within GFF238 at 241.899 kb on - strand, within GFF238 at 241.899 kb on - strand, within GFF238 at 241.907 kb on - strand, within GFF238 at 241.907 kb on - strand, within GFF238 at 241.907 kb on - strand, within GFF238 at 241.907 kb on - strand, within GFF238 at 241.907 kb on - strand, within GFF238 at 241.928 kb on + strand, within GFF238 at 241.933 kb on + strand, within GFF238 at 241.972 kb on + strand, within GFF238 at 241.980 kb on - strand, within GFF238 at 241.987 kb on - strand, within GFF238 at 241.992 kb on - strand, within GFF238 at 241.992 kb on - strand, within GFF238 at 241.996 kb on + strand, within GFF238 at 242.004 kb on - strand, within GFF238 at 242.032 kb on + strand, within GFF238 at 242.078 kb on + strand, within GFF238 at 242.078 kb on + strand, within GFF238 at 242.083 kb on + strand, within GFF238 at 242.086 kb on - strand, within GFF238 at 242.086 kb on - strand, within GFF238 at 242.086 kb on - strand, within GFF238 at 242.086 kb on - strand, within GFF238 at 242.086 kb on - strand, within GFF238 at 242.093 kb on - strand, within GFF238 at 242.101 kb on + strand, within GFF238 at 242.103 kb on + strand, within GFF238 at 242.103 kb on + strand, within GFF238 at 242.107 kb on + strand, within GFF238 at 242.111 kb on - strand, within GFF238 at 242.128 kb on - strand, within GFF238 at 242.130 kb on - strand, within GFF238 at 242.159 kb on + strand, within GFF238 at 242.182 kb on + strand, within GFF238 at 242.209 kb on + strand, within GFF238 at 242.209 kb on + strand, within GFF238 at 242.209 kb on + strand, within GFF238 at 242.233 kb on + strand, within GFF238 at 242.277 kb on + strand, within GFF238 at 242.292 kb on - strand, within GFF238 at 242.296 kb on + strand, within GFF238 at 242.315 kb on - strand, within GFF238 at 242.321 kb on + strand, within GFF238 at 242.323 kb on - strand, within GFF238 at 242.344 kb on - strand, within GFF238 at 242.359 kb on + strand, within GFF238 at 242.393 kb on + strand, within GFF238 at 242.401 kb on - strand, within GFF238 at 242.433 kb on - strand, within GFF238 at 242.442 kb on + strand, within GFF238 at 242.501 kb on + strand, within GFF238 at 242.539 kb on + strand, within GFF238 at 242.547 kb on - strand, within GFF238 at 242.550 kb on + strand, within GFF238 at 242.555 kb on + strand, within GFF238 at 242.558 kb on - strand, within GFF238 at 242.563 kb on - strand, within GFF238 at 242.580 kb on - strand, within GFF238 at 242.605 kb on - strand, within GFF238 at 242.631 kb on + strand, within GFF238 at 242.633 kb on + strand, within GFF238 at 242.633 kb on + strand, within GFF238 at 242.633 kb on + strand, within GFF238 at 242.633 kb on + strand, within GFF238 at 242.633 kb on + strand, within GFF238 at 242.641 kb on - strand, within GFF238 at 242.641 kb on - strand, within GFF238 at 242.641 kb on - strand, within GFF238 at 242.641 kb on - strand, within GFF238 at 242.694 kb on + strand at 242.694 kb on + strand at 242.694 kb on + strand at 242.697 kb on - strand at 242.702 kb on - strand at 242.702 kb on - strand at 242.729 kb on + strand at 242.729 kb on + strand at 242.734 kb on + strand at 242.734 kb on + strand at 242.737 kb on - strand at 242.737 kb on - strand at 242.737 kb on - strand at 242.747 kb on - strand at 242.749 kb on + strand at 242.749 kb on + strand at 242.757 kb on - strand at 242.757 kb on - strand at 242.769 kb on + strand at 242.774 kb on + strand at 242.774 kb on + strand at 242.774 kb on + strand at 242.782 kb on - strand at 242.782 kb on - strand at 242.782 kb on - strand at 242.802 kb on + strand at 242.802 kb on + strand at 242.802 kb on + strand at 242.802 kb on + strand at 242.802 kb on + strand at 242.806 kb on - strand at 242.810 kb on - strand at 242.839 kb on + strand at 242.855 kb on - strand at 242.866 kb on + strand at 242.872 kb on + strand at 242.885 kb on + strand at 242.887 kb on - strand at 242.912 kb on + strand at 242.921 kb on - strand at 242.924 kb on + strand at 242.925 kb on - strand at 242.925 kb on - strand at 242.930 kb on + strand at 242.945 kb on - strand at 243.007 kb on - strand, within GFF239 at 243.077 kb on + strand, within GFF239 at 243.081 kb on + strand, within GFF239 at 243.086 kb on + strand, within GFF239 at 243.086 kb on + strand, within GFF239 at 243.086 kb on + strand, within GFF239 at 243.086 kb on + strand, within GFF239 at 243.086 kb on + strand, within GFF239 at 243.086 kb on + strand, within GFF239 at 243.086 kb on + strand, within GFF239 at 243.086 kb on + strand, within GFF239 at 243.086 kb on + strand, within GFF239 at 243.086 kb on + strand, within GFF239 at 243.086 kb on + strand, within GFF239 at 243.086 kb on + strand, within GFF239 at 243.091 kb on + strand, within GFF239 at 243.094 kb on - strand, within GFF239 at 243.094 kb on - strand, within GFF239 at 243.094 kb on - strand, within GFF239 at 243.094 kb on - strand, within GFF239 at 243.094 kb on - strand, within GFF239 at 243.099 kb on - strand, within GFF239 at 243.140 kb on + strand, within GFF239 at 243.146 kb on + strand, within GFF239 at 243.153 kb on + strand, within GFF239 at 243.161 kb on - strand, within GFF239 at 243.176 kb on - strand, within GFF239 at 243.195 kb on + strand, within GFF239 at 243.195 kb on + strand, within GFF239 at 243.195 kb on + strand, within GFF239 at 243.203 kb on - strand, within GFF239 at 243.203 kb on - strand, within GFF239 at 243.203 kb on - strand, within GFF239 at 243.203 kb on - strand, within GFF239 at 243.251 kb on - strand, within GFF239 at 243.258 kb on - strand, within GFF239 at 243.263 kb on - strand, within GFF239 at 243.279 kb on + strand, within GFF239 at 243.287 kb on - strand, within GFF239 at 243.292 kb on - strand, within GFF239 at 243.320 kb on + strand, within GFF239 at 243.320 kb on + strand, within GFF239 at 243.327 kb on + strand, within GFF239 at 243.335 kb on - strand, within GFF239 at 243.338 kb on - strand, within GFF239 at 243.345 kb on + strand, within GFF239 at 243.372 kb on + strand, within GFF239 at 243.374 kb on - strand, within GFF239 at 243.380 kb on - strand, within GFF239 at 243.380 kb on - strand, within GFF239 at 243.380 kb on - strand, within GFF239 at 243.380 kb on - strand, within GFF239 at 243.380 kb on - strand, within GFF239 at 243.397 kb on - strand, within GFF239 at 243.410 kb on + strand, within GFF239 at 243.410 kb on + strand, within GFF239 at 243.411 kb on - strand, within GFF239 at 243.418 kb on - strand, within GFF239 at 243.450 kb on + strand, within GFF239 at 243.478 kb on - strand, within GFF239 at 243.511 kb on + strand, within GFF239 at 243.511 kb on + strand, within GFF239 at 243.530 kb on + strand, within GFF239 at 243.533 kb on - strand, within GFF239 at 243.555 kb on + strand, within GFF239 at 243.561 kb on - strand, within GFF239 at 243.573 kb on + strand, within GFF239 at 243.573 kb on + strand, within GFF239 at 243.577 kb on + strand, within GFF239 at 243.577 kb on + strand, within GFF239 at 243.585 kb on - strand, within GFF239 at 243.597 kb on + strand, within GFF239 at 243.597 kb on + strand, within GFF239 at 243.597 kb on + strand, within GFF239 at 243.605 kb on - strand, within GFF239 at 243.605 kb on - strand, within GFF239 at 243.605 kb on - strand, within GFF239 at 243.605 kb on - strand, within GFF239 at 243.630 kb on + strand, within GFF239 at 243.630 kb on + strand, within GFF239 at 243.638 kb on - strand, within GFF239 at 243.638 kb on - strand, within GFF239 at 243.648 kb on - strand, within GFF239 at 243.690 kb on - strand, within GFF239 at 243.707 kb on + strand, within GFF239 at 243.711 kb on - strand, within GFF239 at 243.711 kb on - strand, within GFF239 at 243.711 kb on - strand, within GFF239 at 243.721 kb on - strand, within GFF239 at 243.737 kb on - strand, within GFF239 at 243.782 kb on + strand, within GFF239 at 243.803 kb on + strand, within GFF239
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 241,228 + -0.4 241,292 - -0.4 241,348 - +0.8 241,365 - -0.6 241,365 - +0.1 241,388 + +0.9 241,417 - -1.1 241,419 + -1.4 241,424 - +0.7 241,429 - -2.0 241,431 + -0.4 241,434 + -0.8 241,434 - -1.0 241,442 - -0.6 241,442 - +0.7 241,493 + -0.5 241,493 + -0.6 241,500 - -2.7 241,500 - -0.6 241,500 - -0.5 241,501 - -1.0 241,501 - -2.3 241,501 - -0.3 241,508 + -0.2 241,508 + -0.4 241,508 + +0.3 241,552 + GFF238 0.12 -0.4 241,553 + GFF238 0.12 -0.8 241,554 - GFF238 0.12 -0.3 241,561 - GFF238 0.12 +1.2 241,593 + GFF238 0.14 -1.0 241,600 + GFF238 0.15 -1.4 241,608 - GFF238 0.15 -1.3 241,616 + GFF238 0.16 +0.3 241,620 + GFF238 0.16 -1.2 241,628 - GFF238 0.17 -1.0 241,637 + GFF238 0.18 +1.4 241,647 + GFF238 0.18 -1.3 241,664 + GFF238 0.19 -0.9 241,701 - GFF238 0.22 -1.9 241,709 + GFF238 0.23 +0.8 241,722 - GFF238 0.23 -1.0 241,722 - GFF238 0.23 -0.8 241,743 - GFF238 0.25 +0.9 241,763 - GFF238 0.26 -0.3 241,774 + GFF238 0.27 +0.2 241,774 + GFF238 0.27 -0.9 241,777 - GFF238 0.27 -1.0 241,782 - GFF238 0.28 -0.1 241,782 - GFF238 0.28 -1.0 241,812 - GFF238 0.30 -0.8 241,815 + GFF238 0.30 -0.5 241,816 + GFF238 0.30 +0.4 241,817 + GFF238 0.30 +0.2 241,817 + GFF238 0.30 -0.2 241,817 + GFF238 0.30 +0.8 241,820 - GFF238 0.30 -1.0 241,825 - GFF238 0.31 +0.3 241,825 - GFF238 0.31 +0.5 241,825 - GFF238 0.31 -0.4 241,843 + GFF238 0.32 -0.8 241,851 - GFF238 0.33 +0.6 241,861 - GFF238 0.33 -0.9 241,869 + GFF238 0.34 -0.3 241,869 + GFF238 0.34 -0.3 241,870 - GFF238 0.34 +0.3 241,899 - GFF238 0.36 +0.2 241,899 - GFF238 0.36 +1.1 241,907 - GFF238 0.36 +0.2 241,907 - GFF238 0.36 -1.3 241,907 - GFF238 0.36 +1.0 241,907 - GFF238 0.36 -0.9 241,907 - GFF238 0.36 -0.7 241,928 + GFF238 0.38 +0.8 241,933 + GFF238 0.38 -1.3 241,972 + GFF238 0.41 +0.6 241,980 - GFF238 0.42 -2.4 241,987 - GFF238 0.42 -2.3 241,992 - GFF238 0.42 +0.1 241,992 - GFF238 0.42 -0.8 241,996 + GFF238 0.43 -1.8 242,004 - GFF238 0.43 -0.5 242,032 + GFF238 0.45 -0.2 242,078 + GFF238 0.49 +0.2 242,078 + GFF238 0.49 +0.5 242,083 + GFF238 0.49 +0.0 242,086 - GFF238 0.49 +1.1 242,086 - GFF238 0.49 -0.2 242,086 - GFF238 0.49 +0.3 242,086 - GFF238 0.49 +1.1 242,086 - GFF238 0.49 -1.2 242,093 - GFF238 0.50 -0.9 242,101 + GFF238 0.50 +0.1 242,103 + GFF238 0.50 -0.6 242,103 + GFF238 0.50 -0.5 242,107 + GFF238 0.51 +0.1 242,111 - GFF238 0.51 +1.0 242,128 - GFF238 0.52 +0.3 242,130 - GFF238 0.52 +0.4 242,159 + GFF238 0.54 +0.7 242,182 + GFF238 0.56 +2.4 242,209 + GFF238 0.58 +0.2 242,209 + GFF238 0.58 +0.1 242,209 + GFF238 0.58 -0.0 242,233 + GFF238 0.59 +0.9 242,277 + GFF238 0.63 +0.3 242,292 - GFF238 0.64 -0.5 242,296 + GFF238 0.64 -0.3 242,315 - GFF238 0.65 -0.3 242,321 + GFF238 0.66 -0.6 242,323 - GFF238 0.66 +0.9 242,344 - GFF238 0.67 +0.8 242,359 + GFF238 0.68 -0.0 242,393 + GFF238 0.71 -0.1 242,401 - GFF238 0.71 +1.6 242,433 - GFF238 0.73 -0.5 242,442 + GFF238 0.74 -0.6 242,501 + GFF238 0.78 -0.3 242,539 + GFF238 0.81 +0.2 242,547 - GFF238 0.82 +0.6 242,550 + GFF238 0.82 +0.1 242,555 + GFF238 0.82 -0.3 242,558 - GFF238 0.82 +0.1 242,563 - GFF238 0.83 +0.0 242,580 - GFF238 0.84 -1.2 242,605 - GFF238 0.86 +0.3 242,631 + GFF238 0.87 -0.3 242,633 + GFF238 0.88 -0.8 242,633 + GFF238 0.88 -0.2 242,633 + GFF238 0.88 -0.8 242,633 + GFF238 0.88 +0.6 242,633 + GFF238 0.88 -2.5 242,641 - GFF238 0.88 -1.7 242,641 - GFF238 0.88 -1.8 242,641 - GFF238 0.88 -2.1 242,641 - GFF238 0.88 -1.4 242,694 + +1.8 242,694 + -0.1 242,694 + -0.7 242,697 - +1.2 242,702 - -0.5 242,702 - +1.0 242,729 + +1.4 242,729 + -0.8 242,734 + -0.1 242,734 + +0.4 242,737 - -0.2 242,737 - -0.1 242,737 - -1.7 242,747 - +0.5 242,749 + -1.3 242,749 + -1.1 242,757 - -0.7 242,757 - -0.2 242,769 + +0.4 242,774 + -0.7 242,774 + -1.0 242,774 + +0.8 242,782 - -1.2 242,782 - -0.6 242,782 - +0.8 242,802 + +0.7 242,802 + -0.2 242,802 + -0.8 242,802 + +0.7 242,802 + -0.1 242,806 - +0.4 242,810 - -2.7 242,839 + -0.5 242,855 - -0.7 242,866 + -1.9 242,872 + -1.3 242,885 + +1.2 242,887 - -0.8 242,912 + -1.7 242,921 - -0.4 242,924 + -0.6 242,925 - -2.7 242,925 - +1.6 242,930 + +0.3 242,945 - +0.5 243,007 - GFF239 0.13 -2.2 243,077 + GFF239 0.17 -0.6 243,081 + GFF239 0.18 -0.8 243,086 + GFF239 0.18 -1.7 243,086 + GFF239 0.18 +1.0 243,086 + GFF239 0.18 -0.9 243,086 + GFF239 0.18 +0.6 243,086 + GFF239 0.18 -1.7 243,086 + GFF239 0.18 -0.8 243,086 + GFF239 0.18 +1.6 243,086 + GFF239 0.18 +1.0 243,086 + GFF239 0.18 +0.4 243,086 + GFF239 0.18 -1.3 243,086 + GFF239 0.18 -0.3 243,086 + GFF239 0.18 +0.3 243,091 + GFF239 0.18 -1.6 243,094 - GFF239 0.19 +1.2 243,094 - GFF239 0.19 -0.6 243,094 - GFF239 0.19 -0.1 243,094 - GFF239 0.19 +1.3 243,094 - GFF239 0.19 +1.0 243,099 - GFF239 0.19 +0.6 243,140 + GFF239 0.22 -0.8 243,146 + GFF239 0.22 -0.1 243,153 + GFF239 0.23 -2.0 243,161 - GFF239 0.23 +0.5 243,176 - GFF239 0.24 +0.3 243,195 + GFF239 0.26 -0.4 243,195 + GFF239 0.26 +1.6 243,195 + GFF239 0.26 -0.8 243,203 - GFF239 0.26 -0.2 243,203 - GFF239 0.26 -0.6 243,203 - GFF239 0.26 -2.1 243,203 - GFF239 0.26 +1.0 243,251 - GFF239 0.30 -1.5 243,258 - GFF239 0.30 -0.8 243,263 - GFF239 0.30 +0.3 243,279 + GFF239 0.32 +1.0 243,287 - GFF239 0.32 -0.5 243,292 - GFF239 0.32 +0.4 243,320 + GFF239 0.34 +1.1 243,320 + GFF239 0.34 -1.0 243,327 + GFF239 0.35 -0.3 243,335 - GFF239 0.35 +1.4 243,338 - GFF239 0.36 -0.8 243,345 + GFF239 0.36 -0.5 243,372 + GFF239 0.38 +0.4 243,374 - GFF239 0.38 -0.3 243,380 - GFF239 0.39 +1.3 243,380 - GFF239 0.39 +0.5 243,380 - GFF239 0.39 -0.2 243,380 - GFF239 0.39 +1.3 243,380 - GFF239 0.39 -0.6 243,397 - GFF239 0.40 +1.4 243,410 + GFF239 0.41 -0.3 243,410 + GFF239 0.41 +0.2 243,411 - GFF239 0.41 +0.1 243,418 - GFF239 0.41 +0.2 243,450 + GFF239 0.43 -0.3 243,478 - GFF239 0.45 -0.4 243,511 + GFF239 0.48 -0.5 243,511 + GFF239 0.48 +0.2 243,530 + GFF239 0.49 -1.0 243,533 - GFF239 0.49 +0.2 243,555 + GFF239 0.51 -0.8 243,561 - GFF239 0.51 -1.7 243,573 + GFF239 0.52 -1.3 243,573 + GFF239 0.52 +0.1 243,577 + GFF239 0.52 -1.8 243,577 + GFF239 0.52 -0.2 243,585 - GFF239 0.53 -0.3 243,597 + GFF239 0.54 -1.0 243,597 + GFF239 0.54 -1.3 243,597 + GFF239 0.54 +0.2 243,605 - GFF239 0.54 -2.2 243,605 - GFF239 0.54 -0.7 243,605 - GFF239 0.54 -0.4 243,605 - GFF239 0.54 -1.1 243,630 + GFF239 0.56 +0.4 243,630 + GFF239 0.56 -0.7 243,638 - GFF239 0.56 -0.3 243,638 - GFF239 0.56 +0.2 243,648 - GFF239 0.57 -0.5 243,690 - GFF239 0.60 -3.1 243,707 + GFF239 0.61 -0.9 243,711 - GFF239 0.62 +0.9 243,711 - GFF239 0.62 +1.1 243,711 - GFF239 0.62 +0.8 243,721 - GFF239 0.62 -0.8 243,737 - GFF239 0.63 -0.0 243,782 + GFF239 0.66 +0.6 243,803 + GFF239 0.68 +0.0
Or see this region's nucleotide sequence