Strain Fitness in Sphingobium sp. HT1-2 around GFF2308

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,331,784	-		GFF2307	0.24	+1.0
2,331,789	-		GFF2307	0.24	-0.2
2,331,808	+		GFF2307	0.26	-0.2
2,331,824	-		GFF2307	0.27	-0.6
2,331,829	-		GFF2307	0.27	-1.2
2,331,862	+		GFF2307	0.30	-0.1
2,331,867	+		GFF2307	0.30	-0.2
2,331,867	+		GFF2307	0.30	-2.2
2,331,867	+		GFF2307	0.30	+0.2
2,331,867	+		GFF2307	0.30	-1.1
2,331,875	-		GFF2307	0.31	-2.1
2,331,875	-		GFF2307	0.31	-0.6
2,331,875	-		GFF2307	0.31	-2.2
2,331,927	+		GFF2307	0.35	+1.4
2,331,943	-		GFF2307	0.36	-0.0
2,331,959	+		GFF2307	0.37	-0.0
2,331,969	+		GFF2307	0.38	+0.1
2,331,969	+		GFF2307	0.38	+0.7
2,331,972	-		GFF2307	0.38	+0.4
2,331,977	-		GFF2307	0.39	+0.2
2,332,009	-		GFF2307	0.41	+0.9
2,332,014	-		GFF2307	0.42	+0.4
2,332,057	+		GFF2307	0.45	-1.2
2,332,083	+		GFF2307	0.47	-1.0
2,332,090	+		GFF2307	0.47	+0.0
2,332,090	+		GFF2307	0.47	+0.3
2,332,098	-		GFF2307	0.48	-1.9
2,332,108	+		GFF2307	0.49	-1.1
2,332,127	-		GFF2307	0.50	+2.0
2,332,132	+		GFF2307	0.51	-0.0
2,332,145	+		GFF2307	0.52	-0.1
2,332,153	-		GFF2307	0.52	-2.8
2,332,155	+		GFF2307	0.52	+0.2
2,332,163	-		GFF2307	0.53	-0.9
2,332,168	+		GFF2307	0.53	+0.4
2,332,168	+		GFF2307	0.53	-0.9
2,332,168	+		GFF2307	0.53	-0.9
2,332,176	-		GFF2307	0.54	-1.2
2,332,176	-		GFF2307	0.54	-0.2
2,332,176	-		GFF2307	0.54	-0.7
2,332,176	-		GFF2307	0.54	+0.4
2,332,176	-		GFF2307	0.54	-2.8
2,332,176	-		GFF2307	0.54	-1.6
2,332,176	-		GFF2307	0.54	-1.4
2,332,176	-		GFF2307	0.54	+1.5
2,332,176	-		GFF2307	0.54	-0.2
2,332,176	-		GFF2307	0.54	-1.7
2,332,181	-		GFF2307	0.54	-0.6
2,332,181	-		GFF2307	0.54	-0.3
2,332,181	-		GFF2307	0.54	+0.4
2,332,190	+		GFF2307	0.55	+1.0
2,332,198	-		GFF2307	0.56	-0.4
2,332,203	+		GFF2307	0.56	+0.4
2,332,204	-		GFF2307	0.56	-0.1
2,332,248	+		GFF2307	0.59	-0.3
2,332,266	+		GFF2307	0.61	-2.0
2,332,276	-		GFF2307	0.61	+0.6
2,332,284	-		GFF2307	0.62	-0.4
2,332,287	+		GFF2307	0.62	+0.8
2,332,303	-		GFF2307	0.64	+1.9
2,332,303	-		GFF2307	0.64	+0.5
2,332,329	-		GFF2307	0.66	+0.3
2,332,329	-		GFF2307	0.66	-0.4
2,332,375	-		GFF2307	0.69	+0.1
2,332,385	-		GFF2307	0.70	+1.1
2,332,385	-		GFF2307	0.70	-1.4
2,332,408	+		GFF2307	0.72	-1.0
2,332,408	+		GFF2307	0.72	+0.7
2,332,416	-		GFF2307	0.72	-0.9
2,332,450	+		GFF2307	0.75	-0.6
2,332,458	-		GFF2307	0.75	-1.2
2,332,476	+		GFF2307	0.77	-1.4
2,332,495	-		GFF2307	0.78	+0.9
2,332,501	+		GFF2307	0.79	-0.6
2,332,509	-		GFF2307	0.79	+1.3
2,332,509	-		GFF2307	0.79	+0.7
2,332,528	+		GFF2307	0.81	-1.5
2,332,535	-		GFF2307	0.81	-0.4
2,332,535	-		GFF2307	0.81	-0.9
2,332,535	-		GFF2307	0.81	-0.5
2,332,535	-		GFF2307	0.81	+0.2
2,332,540	-		GFF2307	0.82	-0.3
2,332,592	-		GFF2307	0.86	+0.8
2,332,611	-		GFF2307	0.87	-0.1
2,332,612	+		GFF2307	0.87	-1.4
2,332,658	+				-0.6
2,332,658	+				+0.3
2,332,658	+				-0.0
2,332,658	+				+0.4
2,332,658	+				+0.8
2,332,666	-				+0.1
2,332,666	-				+0.1
2,332,666	-				-0.1
2,332,666	-				+0.3
2,332,666	-				+0.1
2,332,666	-				-0.0
2,332,666	-				-1.0
2,332,666	-				-1.0
2,332,666	-				-1.3
2,332,677	+				-0.8
2,332,690	-				+0.7
2,332,704	+				+1.7
2,332,704	+				+0.3
2,332,704	+				+0.4
2,332,704	+				-0.6
2,332,704	+				-1.0
2,332,704	+				-2.7
2,332,704	+				+0.3
2,332,704	+				-0.6
2,332,705	+				+0.2
2,332,705	+				+0.1
2,332,705	+				-0.4
2,332,705	+				-2.0
2,332,705	+				+0.1
2,332,705	+				+0.0
2,332,705	+				-1.0
2,332,705	+				-0.8
2,332,712	-				-1.9
2,332,712	-				-1.7
2,332,712	-				-1.2
2,332,712	-				+0.9
2,332,712	-				-0.7
2,332,712	-				-0.4
2,332,713	-				-0.4
2,332,713	-				+0.2
2,332,713	-				-0.9
2,332,713	-				-0.3
2,332,713	-				+0.7
2,332,723	+				-0.9
2,332,731	-				-0.1
2,332,735	-				+0.1
2,332,745	-				-0.6
2,332,778	-				-0.2
2,332,807	-				-1.2
2,332,810	+				-0.6
2,332,827	-				-0.0
2,332,832	-				-1.3
2,332,833	+				+0.4
2,332,843	-				-1.4
2,332,856	+				+0.7
2,332,864	-				+0.4
2,332,864	-				+0.3
2,332,872	+				+1.3
2,332,872	+				-2.0
2,332,880	-				-0.2
2,332,891	+				+0.1
2,332,891	+				-0.6
2,332,899	+				-0.3
2,332,900	-				+0.3
2,332,900	-				-0.8
2,332,909	-				-1.0
2,332,914	+				-0.3
2,332,914	+				-0.0
2,332,914	+				-0.7
2,332,932	-		GFF2308	0.11	+0.3
2,332,948	+		GFF2308	0.12	+0.1
2,332,948	+		GFF2308	0.12	-1.6
2,332,948	+		GFF2308	0.12	-0.3
2,332,956	-		GFF2308	0.13	-2.2
2,332,961	+		GFF2308	0.13	-1.4
2,332,974	-		GFF2308	0.14	-0.1
2,332,974	-		GFF2308	0.14	-0.2
2,332,979	-		GFF2308	0.14	-0.4
2,332,984	-		GFF2308	0.15	-1.3
2,332,991	-		GFF2308	0.15	-0.0
2,332,991	-		GFF2308	0.15	-0.6
2,332,993	+		GFF2308	0.15	-1.3
2,333,009	+		GFF2308	0.16	-1.3
2,333,017	-		GFF2308	0.17	+0.5
2,333,033	+		GFF2308	0.18	+0.4
2,333,057	+		GFF2308	0.20	-0.4
2,333,072	-		GFF2308	0.21	-1.7
2,333,076	+		GFF2308	0.21	-0.5
2,333,099	+		GFF2308	0.23	+0.5
2,333,119	+		GFF2308	0.24	+1.6
2,333,120	-		GFF2308	0.24	+1.7
2,333,137	-		GFF2308	0.26	-0.8
2,333,170	+		GFF2308	0.28	-0.2
2,333,178	-		GFF2308	0.28	-0.1
2,333,186	+		GFF2308	0.29	+0.7
2,333,191	+		GFF2308	0.29	+1.0
2,333,194	-		GFF2308	0.30	-0.3
2,333,205	+		GFF2308	0.30	-0.2
2,333,205	+		GFF2308	0.30	+0.5
2,333,213	-		GFF2308	0.31	+0.9
2,333,258	+		GFF2308	0.34	+1.5
2,333,258	+		GFF2308	0.34	-0.9
2,333,258	+		GFF2308	0.34	-1.6
2,333,258	+		GFF2308	0.34	+1.7
2,333,266	-		GFF2308	0.35	-1.7
2,333,273	+		GFF2308	0.35	+1.5
2,333,279	+		GFF2308	0.36	-1.2
2,333,281	-		GFF2308	0.36	+0.7
2,333,287	+		GFF2308	0.36	-0.1
2,333,287	+		GFF2308	0.36	+0.8
2,333,288	+		GFF2308	0.36	+0.5
2,333,294	+		GFF2308	0.37	-0.5
2,333,294	+		GFF2308	0.37	+0.5
2,333,295	-		GFF2308	0.37	-2.0
2,333,295	-		GFF2308	0.37	+0.8
2,333,317	-		GFF2308	0.38	+0.9
2,333,327	-		GFF2308	0.39	-1.2
2,333,332	-		GFF2308	0.39	+0.5
2,333,360	-		GFF2308	0.41	-1.6
2,333,363	+		GFF2308	0.42	+1.6
2,333,363	+		GFF2308	0.42	+0.7
2,333,367	-		GFF2308	0.42	-3.0
2,333,379	+		GFF2308	0.43	-1.3
2,333,394	+		GFF2308	0.44	+0.3
2,333,401	-		GFF2308	0.44	-0.7
2,333,404	+		GFF2308	0.45	+0.4
2,333,404	+		GFF2308	0.45	-0.0
2,333,404	+		GFF2308	0.45	-0.6
2,333,404	+		GFF2308	0.45	+1.1
2,333,411	+		GFF2308	0.45	+0.2
2,333,411	+		GFF2308	0.45	+0.1
2,333,411	+		GFF2308	0.45	+0.1
2,333,411	+		GFF2308	0.45	+0.3
2,333,411	+		GFF2308	0.45	-0.2
2,333,411	+		GFF2308	0.45	-1.1
2,333,411	+		GFF2308	0.45	-0.4
2,333,412	-		GFF2308	0.45	-1.5
2,333,419	-		GFF2308	0.46	+1.4
2,333,419	-		GFF2308	0.46	-1.0
2,333,419	-		GFF2308	0.46	-0.2
2,333,419	-		GFF2308	0.46	-1.4
2,333,419	-		GFF2308	0.46	+0.2
2,333,455	+		GFF2308	0.48	-0.6
2,333,455	+		GFF2308	0.48	-0.5
2,333,463	-		GFF2308	0.49	+0.6
2,333,463	-		GFF2308	0.49	+0.0
2,333,467	-		GFF2308	0.49	-0.7
2,333,498	+		GFF2308	0.51	+0.2
2,333,508	+		GFF2308	0.52	+0.4
2,333,512	-		GFF2308	0.52	+0.5
2,333,515	+		GFF2308	0.52	-0.1
2,333,516	-		GFF2308	0.53	+1.2
2,333,532	+		GFF2308	0.54	+1.2
2,333,558	+		GFF2308	0.56	-1.6
2,333,566	-		GFF2308	0.56	+0.2
2,333,566	-		GFF2308	0.56	-0.3
2,333,601	+		GFF2308	0.59	+1.2
2,333,601	+		GFF2308	0.59	-0.5
2,333,606	+		GFF2308	0.59	-0.6
2,333,606	+		GFF2308	0.59	+0.5
2,333,606	+		GFF2308	0.59	-1.0
2,333,609	-		GFF2308	0.59	-0.5
2,333,609	-		GFF2308	0.59	+0.6
2,333,609	-		GFF2308	0.59	-0.2
2,333,609	-		GFF2308	0.59	+0.3
2,333,614	-		GFF2308	0.60	-0.6
2,333,614	-		GFF2308	0.60	-1.4
2,333,614	-		GFF2308	0.60	-1.4
2,333,614	-		GFF2308	0.60	-1.4
2,333,655	-		GFF2308	0.62	-1.3
2,333,666	+		GFF2308	0.63	-0.6
2,333,674	-		GFF2308	0.64	-1.0
2,333,705	+		GFF2308	0.66	+0.5
2,333,729	+		GFF2308	0.68	+0.0
2,333,737	+		GFF2308	0.68	+1.1
2,333,737	-		GFF2308	0.68	-1.5
2,333,745	-		GFF2308	0.69	+0.4
2,333,747	+		GFF2308	0.69	+0.5
2,333,747	+		GFF2308	0.69	+0.6
2,333,750	-		GFF2308	0.69	+1.1
2,333,750	-		GFF2308	0.69	-1.5
2,333,750	-		GFF2308	0.69	+0.3
2,333,755	-		GFF2308	0.70	-1.7
2,333,755	-		GFF2308	0.70	+0.1
2,333,755	-		GFF2308	0.70	-1.9
2,333,757	-		GFF2308	0.70	+0.0
2,333,757	-		GFF2308	0.70	-0.2
2,333,757	-		GFF2308	0.70	-1.6
2,333,762	-		GFF2308	0.70	-0.6
2,333,811	+		GFF2308	0.74	-1.8
2,333,813	-		GFF2308	0.74	-0.3
2,333,818	-		GFF2308	0.74	-0.5
2,333,871	+		GFF2308	0.78	-0.8
2,333,873	+		GFF2308	0.78	-0.5
2,333,881	-		GFF2308	0.79	-0.5
2,333,896	+		GFF2308	0.80	-1.2
2,333,905	+		GFF2308	0.80	-1.3
2,333,923	+		GFF2308	0.82	+1.0
2,333,972	+		GFF2308	0.85	+0.9
2,333,980	-		GFF2308	0.86	-0.8
2,333,980	-		GFF2308	0.86	-0.3
2,333,987	-		GFF2308	0.86	-0.2
2,334,016	+		GFF2308	0.88	-0.2
2,334,024	-		GFF2308	0.89	+0.3
2,334,026	+		GFF2308	0.89	-1.4
2,334,042	+				-0.4
2,334,042	+				-1.3
2,334,043	+				-0.5
2,334,043	+				+0.3
2,334,050	-				+1.5
2,334,050	-				-1.6
2,334,071	+				-1.4
2,334,079	-				-0.0
2,334,079	-				-2.5
2,334,079	-				-0.0
2,334,084	+				+0.4
2,334,092	-				+0.4
2,334,098	-				+1.8
2,334,134	-				-2.7
2,334,150	+				-0.5
2,334,150	+				-1.7
2,334,153	-				+0.3
2,334,153	-				-2.3
2,334,153	-				-0.7
2,334,162	+				+0.4
2,334,176	+				-0.0
2,334,184	-				+1.8
2,334,239	+				-0.4
2,334,255	-				-0.1
2,334,255	-				-1.5
2,334,260	-				+1.0
2,334,312	+				-0.8
2,334,320	-				-0.3
2,334,394	-		GFF2309	0.14	-1.0
2,334,419	-		GFF2309	0.16	+0.6
2,334,485	+		GFF2309	0.20	-1.3
2,334,485	+		GFF2309	0.20	+1.4
2,334,485	+		GFF2309	0.20	-1.5
2,334,493	-		GFF2309	0.21	-0.5
2,334,524	+		GFF2309	0.23	+0.8
2,334,532	-		GFF2309	0.23	-1.7
2,334,585	+		GFF2309	0.27	+0.3
2,334,585	+		GFF2309	0.27	+0.2
2,334,593	-		GFF2309	0.27	-0.4
2,334,593	-		GFF2309	0.27	-0.5
2,334,593	-		GFF2309	0.27	+1.6
2,334,594	-		GFF2309	0.27	+0.6
2,334,629	-		GFF2309	0.29	-0.4
2,334,647	+		GFF2309	0.31	+0.8
2,334,647	+		GFF2309	0.31	-1.7
2,334,647	+		GFF2309	0.31	-1.2
2,334,655	-		GFF2309	0.31	+0.2
2,334,655	-		GFF2309	0.31	-1.7
2,334,678	+		GFF2309	0.33	+0.7
2,334,686	-		GFF2309	0.33	+0.4
2,334,709	-		GFF2309	0.35	-1.3
2,334,725	+		GFF2309	0.36	-1.3
2,334,730	+		GFF2309	0.36	+0.1
2,334,733	-		GFF2309	0.36	-1.3
2,334,738	-		GFF2309	0.37	+0.7
2,334,738	-		GFF2309	0.37	-1.3
2,334,757	-		GFF2309	0.38	+0.7
2,334,757	-		GFF2309	0.38	-2.0
2,334,779	+		GFF2309	0.39	-1.0
2,334,785	-		GFF2309	0.40	-1.6
2,334,798	+		GFF2309	0.41	-0.4
2,334,800	+		GFF2309	0.41	-2.7
2,334,800	+		GFF2309	0.41	-2.5
2,334,821	-		GFF2309	0.42	-0.2
2,334,865	+		GFF2309	0.45	+1.2
2,334,873	-		GFF2309	0.45	-1.6
2,334,873	-		GFF2309	0.45	+0.5
2,334,873	-		GFF2309	0.45	+0.2
2,334,873	-		GFF2309	0.45	+0.8
2,334,873	-		GFF2309	0.45	+0.3
2,334,881	-		GFF2309	0.46	+0.9
2,334,909	+		GFF2309	0.48	-0.5
2,334,914	+		GFF2309	0.48	-0.0
2,334,917	-		GFF2309	0.48	+0.3
2,334,917	-		GFF2309	0.48	+0.9
2,334,929	+		GFF2309	0.49	-1.0
2,334,935	-		GFF2309	0.49	-0.5
2,334,937	-		GFF2309	0.50	+0.1
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2,335,067	+		GFF2309	0.58	+0.9
2,335,075	-		GFF2309	0.59	-1.2
2,335,075	-		GFF2309	0.59	-1.3