Strain Fitness in Sphingobium sp. HT1-2 around GFF2216

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,229,773	-		GFF2215	0.45	+0.0
2,229,773	-		GFF2215	0.45	-2.0
2,229,794	+		GFF2215	0.46	-1.0
2,229,825	+		GFF2215	0.48	-0.1
2,229,825	+		GFF2215	0.48	+0.3
2,229,825	+		GFF2215	0.48	-1.0
2,229,825	+		GFF2215	0.48	-0.5
2,229,830	+		GFF2215	0.48	-0.2
2,229,830	+		GFF2215	0.48	+1.7
2,229,830	+		GFF2215	0.48	-0.4
2,229,833	-		GFF2215	0.48	+0.2
2,229,833	-		GFF2215	0.48	-0.5
2,229,835	+		GFF2215	0.48	+1.5
2,229,877	+		GFF2215	0.50	+0.4
2,229,895	+		GFF2215	0.51	-0.4
2,229,896	+		GFF2215	0.51	-0.1
2,229,896	+		GFF2215	0.51	+0.1
2,229,912	+		GFF2215	0.52	-0.6
2,229,912	+		GFF2215	0.52	-0.2
2,229,919	-		GFF2215	0.53	+0.1
2,229,920	-		GFF2215	0.53	-0.4
2,229,932	+		GFF2215	0.53	-1.0
2,229,957	+		GFF2215	0.55	-0.4
2,229,986	-		GFF2215	0.56	-0.6
2,229,986	-		GFF2215	0.56	-1.2
2,230,011	-		GFF2215	0.58	+0.9
2,230,018	-		GFF2215	0.58	-0.9
2,230,049	+		GFF2215	0.60	-0.3
2,230,049	+		GFF2215	0.60	+0.9
2,230,054	+		GFF2215	0.60	+0.5
2,230,054	+		GFF2215	0.60	-0.6
2,230,062	-		GFF2215	0.61	-1.4
2,230,082	+		GFF2215	0.62	-2.0
2,230,096	-		GFF2215	0.62	-1.7
2,230,106	+		GFF2215	0.63	-2.5
2,230,142	-		GFF2215	0.65	+1.7
2,230,194	-		GFF2215	0.68	+0.4
2,230,218	-		GFF2215	0.69	+0.5
2,230,255	+		GFF2215	0.71	-0.5
2,230,255	+		GFF2215	0.71	-0.0
2,230,260	+		GFF2215	0.72	-0.2
2,230,260	+		GFF2215	0.72	+1.0
2,230,260	+		GFF2215	0.72	-0.1
2,230,260	+		GFF2215	0.72	+0.4
2,230,260	+		GFF2215	0.72	-0.2
2,230,260	+		GFF2215	0.72	-0.2
2,230,260	+		GFF2215	0.72	+0.8
2,230,260	+		GFF2215	0.72	-0.2
2,230,260	+		GFF2215	0.72	+0.2
2,230,260	+		GFF2215	0.72	-0.3
2,230,260	+		GFF2215	0.72	-0.6
2,230,260	+		GFF2215	0.72	+0.3
2,230,260	+		GFF2215	0.72	-0.6
2,230,260	+		GFF2215	0.72	-2.2
2,230,260	+		GFF2215	0.72	+0.1
2,230,260	+		GFF2215	0.72	-2.2
2,230,260	+		GFF2215	0.72	+0.3
2,230,260	+		GFF2215	0.72	+0.5
2,230,260	+		GFF2215	0.72	+0.9
2,230,260	+		GFF2215	0.72	+0.8
2,230,260	+		GFF2215	0.72	-1.4
2,230,261	-		GFF2215	0.72	-1.4
2,230,268	-		GFF2215	0.72	+0.7
2,230,268	-		GFF2215	0.72	-2.4
2,230,268	-		GFF2215	0.72	-1.4
2,230,268	-		GFF2215	0.72	-0.6
2,230,268	-		GFF2215	0.72	+0.6
2,230,268	-		GFF2215	0.72	+0.8
2,230,268	-		GFF2215	0.72	-2.2
2,230,268	-		GFF2215	0.72	+0.9
2,230,268	-		GFF2215	0.72	-1.3
2,230,268	-		GFF2215	0.72	+0.3
2,230,268	-		GFF2215	0.72	-1.6
2,230,268	-		GFF2215	0.72	-0.8
2,230,268	-		GFF2215	0.72	-2.1
2,230,268	-		GFF2215	0.72	-0.0
2,230,268	-		GFF2215	0.72	-0.1
2,230,268	-		GFF2215	0.72	+0.2
2,230,268	-		GFF2215	0.72	-0.0
2,230,268	-		GFF2215	0.72	+1.4
2,230,268	-		GFF2215	0.72	+1.5
2,230,268	-		GFF2215	0.72	-0.1
2,230,271	+		GFF2215	0.72	+0.7
2,230,271	+		GFF2215	0.72	+0.3
2,230,271	+		GFF2215	0.72	+0.6
2,230,271	+		GFF2215	0.72	+0.7
2,230,273	+		GFF2215	0.72	-0.3
2,230,278	-		GFF2215	0.72	+0.3
2,230,279	-		GFF2215	0.73	+0.9
2,230,279	-		GFF2215	0.73	-0.4
2,230,334	-		GFF2215	0.76	+0.6
2,230,338	-		GFF2215	0.76	-1.7
2,230,340	-		GFF2215	0.76	-0.3
2,230,340	-		GFF2215	0.76	+0.5
2,230,351	-		GFF2215	0.77	-0.5
2,230,393	+		GFF2215	0.79	-0.3
2,230,419	+		GFF2215	0.80	-0.3
2,230,432	+		GFF2215	0.81	+0.5
2,230,432	+		GFF2215	0.81	-0.7
2,230,432	+		GFF2215	0.81	-0.2
2,230,440	-		GFF2215	0.81	-1.0
2,230,440	-		GFF2215	0.81	-1.5
2,230,440	-		GFF2215	0.81	+0.9
2,230,440	-		GFF2215	0.81	-0.8
2,230,440	-		GFF2215	0.81	+0.1
2,230,440	-		GFF2215	0.81	-0.0
2,230,440	-		GFF2215	0.81	-0.3
2,230,449	+		GFF2215	0.82	+0.3
2,230,449	+		GFF2215	0.82	-2.6
2,230,449	+		GFF2215	0.82	-0.9
2,230,449	+		GFF2215	0.82	+0.1
2,230,457	-		GFF2215	0.82	-0.5
2,230,457	-		GFF2215	0.82	-1.7
2,230,457	-		GFF2215	0.82	-0.6
2,230,457	-		GFF2215	0.82	-0.1
2,230,457	-		GFF2215	0.82	+0.3
2,230,477	+		GFF2215	0.83	+0.7
2,230,511	+		GFF2215	0.85	-0.6
2,230,529	-		GFF2215	0.86	-1.9
2,230,542	+		GFF2215	0.87	+0.2
2,230,547	+		GFF2215	0.87	-1.9
2,230,550	-		GFF2215	0.87	-0.2
2,230,550	-		GFF2215	0.87	+0.5
2,230,552	+		GFF2215	0.88	-1.5
2,230,552	+		GFF2215	0.88	+0.6
2,230,552	+		GFF2215	0.88	+0.2
2,230,560	-		GFF2215	0.88	-0.7
2,230,577	-		GFF2215	0.89	-1.0
2,230,577	-		GFF2215	0.89	-1.4
2,230,579	+		GFF2215	0.89	-1.3
2,230,579	+		GFF2215	0.89	+1.1
2,230,579	+		GFF2215	0.89	+0.6
2,230,579	+		GFF2215	0.89	-0.4
2,230,579	+		GFF2215	0.89	-1.2
2,230,579	+		GFF2215	0.89	-0.4
2,230,579	+		GFF2215	0.89	-1.3
2,230,587	-		GFF2215	0.89	-1.3
2,230,587	-		GFF2215	0.89	-1.3
2,230,587	-		GFF2215	0.89	+0.7
2,230,587	-		GFF2215	0.89	+0.3
2,230,587	-		GFF2215	0.89	-1.9
2,230,587	-		GFF2215	0.89	-1.9
2,230,608	+				-0.5
2,230,613	+				+1.2
2,230,614	+				-1.8
2,230,639	-				-0.1
2,230,640	-				+0.9
2,230,684	+				+0.2
2,230,685	+				-0.7
2,230,685	+				+0.3
2,230,687	-				-1.2
2,230,693	-				+0.7
2,230,693	-				+0.6
2,230,694	-				+1.0
2,230,698	+				-0.5
2,230,718	-				-0.7
2,230,769	+				-0.6
2,230,778	+				-0.7
2,230,782	-				+0.5
2,230,787	-				-0.1
2,230,852	+				-2.4
2,230,911	-		GFF2216	0.17	+0.7
2,230,928	+		GFF2216	0.19	+0.2
2,230,928	+		GFF2216	0.19	+0.7
2,230,936	+		GFF2216	0.20	-0.8
2,230,936	-		GFF2216	0.20	-0.8
2,230,936	-		GFF2216	0.20	+1.0
2,230,941	+		GFF2216	0.20	-0.4
2,230,949	-		GFF2216	0.21	-0.5
2,230,968	-		GFF2216	0.23	+0.1
2,230,968	-		GFF2216	0.23	+0.2
2,230,968	-		GFF2216	0.23	-0.6
2,230,968	-		GFF2216	0.23	-0.0
2,230,973	+		GFF2216	0.24	-1.1
2,230,973	+		GFF2216	0.24	-1.3
2,230,973	+		GFF2216	0.24	-0.5
2,230,973	+		GFF2216	0.24	-0.8
2,230,981	-		GFF2216	0.25	-0.8
2,230,981	-		GFF2216	0.25	-0.6
2,230,981	-		GFF2216	0.25	-1.0
2,230,981	-		GFF2216	0.25	+1.1
2,230,981	-		GFF2216	0.25	-1.5
2,230,986	+		GFF2216	0.25	-0.5
2,230,989	+		GFF2216	0.26	+0.0
2,230,990	+		GFF2216	0.26	-0.6
2,230,998	-		GFF2216	0.27	+0.0
2,231,000	+		GFF2216	0.27	-0.0
2,231,023	+		GFF2216	0.30	+0.4
2,231,023	+		GFF2216	0.30	+0.8
2,231,031	-		GFF2216	0.31	-1.1
2,231,034	+		GFF2216	0.31	-0.2
2,231,042	-		GFF2216	0.32	-0.3
2,231,072	+		GFF2216	0.35	+1.3
2,231,080	+		GFF2216	0.36	+0.9
2,231,080	-		GFF2216	0.36	-1.7
2,231,093	-		GFF2216	0.38	+0.9
2,231,100	-		GFF2216	0.39	-0.8
2,231,107	+		GFF2216	0.39	-1.5
2,231,153	-		GFF2216	0.45	-1.3
2,231,204	+		GFF2216	0.51	-2.0
2,231,208	+		GFF2216	0.51	+0.3
2,231,210	+		GFF2216	0.51	-0.4
2,231,218	+		GFF2216	0.52	-1.3
2,231,220	+		GFF2216	0.53	-1.5
2,231,220	+		GFF2216	0.53	+0.2
2,231,228	-		GFF2216	0.54	+0.5
2,231,228	-		GFF2216	0.54	-0.5
2,231,228	-		GFF2216	0.54	-1.0
2,231,228	-		GFF2216	0.54	+0.2
2,231,228	-		GFF2216	0.54	-0.4
2,231,237	+		GFF2216	0.55	-0.8
2,231,237	+		GFF2216	0.55	-2.5
2,231,237	+		GFF2216	0.55	-0.8
2,231,237	+		GFF2216	0.55	+0.6
2,231,237	+		GFF2216	0.55	+0.8
2,231,237	+		GFF2216	0.55	-0.5
2,231,246	-		GFF2216	0.56	-2.1
2,231,246	-		GFF2216	0.56	+0.5
2,231,256	+		GFF2216	0.57	-0.4
2,231,264	-		GFF2216	0.58	+0.7
2,231,295	-		GFF2216	0.61	-0.4
2,231,322	+		GFF2216	0.64	+0.0
2,231,323	+		GFF2216	0.65	+0.3
2,231,329	+		GFF2216	0.65	-2.0
2,231,331	-		GFF2216	0.66	+0.2
2,231,331	-		GFF2216	0.66	+0.4
2,231,337	-		GFF2216	0.66	-0.1
2,231,337	-		GFF2216	0.66	-0.8
2,231,337	-		GFF2216	0.66	+0.3
2,231,341	+		GFF2216	0.67	-2.9
2,231,431	-		GFF2216	0.77	+0.6
2,231,458	-		GFF2216	0.80	-1.3
2,231,464	+		GFF2216	0.81	-0.3
2,231,476	-		GFF2216	0.82	-0.1
2,231,477	-		GFF2216	0.82	-0.4
2,231,484	+		GFF2216	0.83	+1.7
2,231,488	+		GFF2216	0.84	+1.0
2,231,488	+		GFF2216	0.84	+0.2
2,231,492	-		GFF2216	0.84	-2.0
2,231,498	+		GFF2216	0.85	+0.0
2,231,503	-		GFF2216	0.85	+1.2
2,231,554	+				+0.6
2,231,585	+				-0.5
2,231,585	+				-0.2
2,231,589	+				-1.1
2,231,593	-				-1.4
2,231,628	-				-0.8
2,231,628	-				-0.2
2,231,647	+				-0.3
2,231,652	+				-1.4
2,231,655	-				-1.6
2,231,660	-				+0.6
2,231,662	-				+0.3
2,231,726	+				-0.6
2,231,767	-				-0.0
2,231,775	+				-1.1
2,231,775	+				+0.3
2,231,775	+				-0.6
2,231,775	+				-0.3
2,231,776	-				+0.9
2,231,781	-				-1.6
2,231,783	-				+0.3
2,231,783	-				+0.3
2,231,783	-				-0.7
2,231,783	-				-2.6
2,231,783	-				-0.4
2,231,783	-				+1.3
2,231,783	-				+0.6
2,231,806	+				-1.0
2,231,814	-				-0.6
2,231,850	+				-1.1
2,231,870	+				+1.1
2,231,880	+				+0.6
2,231,880	+				-1.1
2,231,903	+				+1.1
2,231,927	+				+0.1
2,231,929	+				+0.3
2,231,929	+				-0.0
2,231,929	+				-1.1
2,231,930	-				-1.0
2,231,935	-				-1.8
2,231,937	-				-0.4
2,232,055	+		GFF2217	0.13	+0.7
2,232,055	+		GFF2217	0.13	+0.2
2,232,055	+		GFF2217	0.13	-0.4
2,232,060	+		GFF2217	0.13	-1.3
2,232,060	+		GFF2217	0.13	-0.9
2,232,060	+		GFF2217	0.13	-1.7
2,232,060	+		GFF2217	0.13	-1.7
2,232,070	+		GFF2217	0.13	-0.6
2,232,078	-		GFF2217	0.13	-0.8
2,232,078	-		GFF2217	0.13	+1.5
2,232,078	-		GFF2217	0.13	+0.7
2,232,078	-		GFF2217	0.13	-0.2
2,232,087	-		GFF2217	0.13	-2.4
2,232,151	+		GFF2217	0.15	-1.2
2,232,151	+		GFF2217	0.15	+0.5
2,232,151	+		GFF2217	0.15	-2.3
2,232,151	+		GFF2217	0.15	-0.0
2,232,159	-		GFF2217	0.16	-0.3
2,232,159	-		GFF2217	0.16	-0.0
2,232,159	-		GFF2217	0.16	+1.4
2,232,159	-		GFF2217	0.16	+0.1
2,232,159	-		GFF2217	0.16	-0.5
2,232,175	+		GFF2217	0.16	+0.6
2,232,178	-		GFF2217	0.16	+1.8
2,232,181	+		GFF2217	0.16	+0.1
2,232,184	-		GFF2217	0.16	-0.8
2,232,186	+		GFF2217	0.16	+0.5
2,232,204	+		GFF2217	0.17	+0.1
2,232,204	+		GFF2217	0.17	+0.3
2,232,204	+		GFF2217	0.17	+1.2
2,232,204	+		GFF2217	0.17	-0.4
2,232,209	+		GFF2217	0.17	-0.1
2,232,212	-		GFF2217	0.17	+0.2
2,232,228	-		GFF2217	0.18	-0.4
2,232,243	+		GFF2217	0.18	+1.3
2,232,243	+		GFF2217	0.18	+0.1
2,232,252	+		GFF2217	0.18	-0.5
2,232,262	+		GFF2217	0.19	-0.3
2,232,262	+		GFF2217	0.19	-0.7
2,232,262	+		GFF2217	0.19	+0.3
2,232,270	-		GFF2217	0.19	-0.1
2,232,270	-		GFF2217	0.19	+0.6
2,232,286	+		GFF2217	0.19	-1.0
2,232,286	+		GFF2217	0.19	-0.0
2,232,290	-		GFF2217	0.19	-1.6
2,232,294	-		GFF2217	0.20	+0.8
2,232,294	-		GFF2217	0.20	+0.9
2,232,294	-		GFF2217	0.20	-0.5
2,232,294	-		GFF2217	0.20	+1.0
2,232,294	-		GFF2217	0.20	-0.9
2,232,308	+		GFF2217	0.20	-2.2
2,232,308	+		GFF2217	0.20	-1.1
2,232,316	-		GFF2217	0.20	-0.7
2,232,316	-		GFF2217	0.20	-0.4
2,232,323	+		GFF2217	0.20	-0.7
2,232,323	+		GFF2217	0.20	+1.2
2,232,331	-		GFF2217	0.21	+0.3
2,232,356	-		GFF2217	0.21	-1.6
2,232,402	+		GFF2217	0.23	-0.9
2,232,417	+		GFF2217	0.23	-1.1
2,232,430	-		GFF2217	0.24	+0.3
2,232,431	-		GFF2217	0.24	-0.1
2,232,431	-		GFF2217	0.24	-0.4
2,232,462	-		GFF2217	0.24	-0.6
2,232,462	-		GFF2217	0.24	-1.0
2,232,464	-		GFF2217	0.25	-1.2
2,232,464	-		GFF2217	0.25	-0.0
2,232,474	+		GFF2217	0.25	+0.0
2,232,491	-		GFF2217	0.25	+0.3
2,232,501	+		GFF2217	0.26	-0.1
2,232,510	+		GFF2217	0.26	-0.8
2,232,510	+		GFF2217	0.26	-2.0
2,232,518	-		GFF2217	0.26	-2.1
2,232,518	-		GFF2217	0.26	-0.9
2,232,518	-		GFF2217	0.26	-1.4
2,232,518	-		GFF2217	0.26	+0.0
2,232,527	-		GFF2217	0.26	-1.3
2,232,534	+		GFF2217	0.27	-2.0
2,232,534	+		GFF2217	0.27	-1.4
2,232,542	-		GFF2217	0.27	-0.6
2,232,542	-		GFF2217	0.27	-0.5
2,232,544	+		GFF2217	0.27	-0.5
2,232,547	-		GFF2217	0.27	+0.2
2,232,547	-		GFF2217	0.27	-2.1
2,232,547	-		GFF2217	0.27	-0.5
2,232,547	-		GFF2217	0.27	-2.1
2,232,549	+		GFF2217	0.27	-0.3
2,232,549	+		GFF2217	0.27	-0.0
2,232,557	-		GFF2217	0.27	+0.0
2,232,576	+		GFF2217	0.28	+0.5
2,232,604	-		GFF2217	0.29	+0.8
2,232,609	+		GFF2217	0.29	-1.2
2,232,624	+		GFF2217	0.29	-0.7