Strain Fitness in Sphingobium sp. HT1-2 around GFF216

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF215 and GFF216 are separated by 83 nucleotidesGFF216 and GFF217 overlap by 4 nucleotidesGFF217 and GFF218 overlap by 4 nucleotides GFF215 - 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), C-terminal domain, at 220,743 to 223,346 GFF215 GFF216 - 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), N-terminal domain, at 223,430 to 224,476 GFF216 GFF217 - 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20), at 224,473 to 225,405 GFF217 GFF218 - Transcriptional regulator, ArsR family / Methyltransferase fusion, at 225,402 to 226,373 GFF218 Position (kb) 223 224 225Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 222.430 kb on + strand, within GFF215at 222.438 kb on - strand, within GFF215at 222.440 kb on - strand, within GFF215at 222.440 kb on - strand, within GFF215at 222.471 kb on - strand, within GFF215at 222.522 kb on + strand, within GFF215at 222.528 kb on - strand, within GFF215at 222.530 kb on + strand, within GFF215at 222.530 kb on - strand, within GFF215at 222.530 kb on - strand, within GFF215at 222.549 kb on + strand, within GFF215at 222.562 kb on - strand, within GFF215at 222.577 kb on + strand, within GFF215at 222.587 kb on + strand, within GFF215at 222.587 kb on + strand, within GFF215at 222.592 kb on + strand, within GFF215at 222.592 kb on + strand, within GFF215at 222.600 kb on - strand, within GFF215at 222.600 kb on - strand, within GFF215at 222.622 kb on + strand, within GFF215at 222.626 kb on - strand, within GFF215at 222.630 kb on - strand, within GFF215at 222.636 kb on - strand, within GFF215at 222.638 kb on + strand, within GFF215at 222.638 kb on + strand, within GFF215at 222.696 kb on + strand, within GFF215at 222.762 kb on - strand, within GFF215at 222.834 kb on + strand, within GFF215at 222.856 kb on + strand, within GFF215at 222.866 kb on + strand, within GFF215at 222.866 kb on - strand, within GFF215at 222.895 kb on + strand, within GFF215at 222.908 kb on - strand, within GFF215at 222.913 kb on - strand, within GFF215at 222.934 kb on - strand, within GFF215at 222.936 kb on + strand, within GFF215at 222.937 kb on + strand, within GFF215at 222.957 kb on - strand, within GFF215at 222.963 kb on - strand, within GFF215at 222.971 kb on + strand, within GFF215at 222.979 kb on - strand, within GFF215at 223.004 kb on + strand, within GFF215at 223.004 kb on + strand, within GFF215at 223.004 kb on + strand, within GFF215at 223.004 kb on + strand, within GFF215at 223.004 kb on + strand, within GFF215at 223.004 kb on + strand, within GFF215at 223.004 kb on + strand, within GFF215at 223.004 kb on + strand, within GFF215at 223.004 kb on + strand, within GFF215at 223.004 kb on + strand, within GFF215at 223.004 kb on + strand, within GFF215at 223.004 kb on + strand, within GFF215at 223.012 kb on - strand, within GFF215at 223.012 kb on - strand, within GFF215at 223.012 kb on - strand, within GFF215at 223.012 kb on - strand, within GFF215at 223.012 kb on - strand, within GFF215at 223.026 kb on - strand, within GFF215at 223.026 kb on - strand, within GFF215at 223.026 kb on - strand, within GFF215at 223.047 kb on + strand, within GFF215at 223.052 kb on + strand, within GFF215at 223.055 kb on - strand, within GFF215at 223.055 kb on - strand, within GFF215at 223.055 kb on - strand, within GFF215at 223.065 kb on - strand, within GFF215at 223.097 kb on + strandat 223.105 kb on - strandat 223.110 kb on - strandat 223.115 kb on + strandat 223.164 kb on + strandat 223.172 kb on - strandat 223.172 kb on - strandat 223.182 kb on + strandat 223.182 kb on - strandat 223.246 kb on - strandat 223.255 kb on + strandat 223.263 kb on - strandat 223.314 kb on + strandat 223.325 kb on + strandat 223.335 kb on - strandat 223.340 kb on - strandat 223.363 kb on + strandat 223.363 kb on + strandat 223.381 kb on - strandat 223.381 kb on - strandat 223.403 kb on - strandat 223.414 kb on - strandat 223.458 kb on - strandat 223.458 kb on - strandat 223.458 kb on - strandat 223.469 kb on + strandat 223.506 kb on + strandat 223.509 kb on - strandat 223.509 kb on - strandat 223.509 kb on - strandat 223.509 kb on - strandat 223.509 kb on - strandat 223.509 kb on - strandat 223.563 kb on + strand, within GFF216at 223.620 kb on - strand, within GFF216at 223.642 kb on - strand, within GFF216at 223.671 kb on + strand, within GFF216at 223.677 kb on + strand, within GFF216at 223.677 kb on + strand, within GFF216at 223.684 kb on - strand, within GFF216at 223.689 kb on - strand, within GFF216at 223.707 kb on + strand, within GFF216at 223.727 kb on + strand, within GFF216at 223.727 kb on + strand, within GFF216at 223.730 kb on - strand, within GFF216at 223.732 kb on + strand, within GFF216at 223.732 kb on + strand, within GFF216at 223.732 kb on + strand, within GFF216at 223.732 kb on + strand, within GFF216at 223.740 kb on - strand, within GFF216at 223.740 kb on - strand, within GFF216at 223.740 kb on - strand, within GFF216at 223.740 kb on - strand, within GFF216at 223.740 kb on - strand, within GFF216at 223.751 kb on + strand, within GFF216at 223.759 kb on - strand, within GFF216at 223.764 kb on - strand, within GFF216at 223.764 kb on - strand, within GFF216at 223.771 kb on + strand, within GFF216at 223.771 kb on + strand, within GFF216at 223.779 kb on - strand, within GFF216at 223.779 kb on - strand, within GFF216at 223.779 kb on - strand, within GFF216at 223.779 kb on - strand, within GFF216at 223.779 kb on - strand, within GFF216at 223.779 kb on - strand, within GFF216at 223.831 kb on - strand, within GFF216at 223.854 kb on - strand, within GFF216at 223.874 kb on - strand, within GFF216at 223.926 kb on - strand, within GFF216at 224.055 kb on - strand, within GFF216at 224.061 kb on - strand, within GFF216at 224.186 kb on + strand, within GFF216at 224.194 kb on - strand, within GFF216at 224.194 kb on - strand, within GFF216at 224.244 kb on + strand, within GFF216at 224.246 kb on - strand, within GFF216at 224.246 kb on - strand, within GFF216at 224.274 kb on - strand, within GFF216at 224.288 kb on - strand, within GFF216at 224.298 kb on + strand, within GFF216at 224.304 kb on + strand, within GFF216at 224.312 kb on - strand, within GFF216at 224.331 kb on - strand, within GFF216at 224.353 kb on + strand, within GFF216at 224.353 kb on + strand, within GFF216at 224.388 kb on - strandat 224.406 kb on + strandat 224.408 kb on + strandat 224.416 kb on - strandat 224.434 kb on - strandat 224.514 kb on + strandat 224.539 kb on + strandat 224.539 kb on + strandat 224.547 kb on - strandat 224.547 kb on - strandat 224.608 kb on - strand, within GFF217at 224.666 kb on - strand, within GFF217at 224.697 kb on + strand, within GFF217at 224.702 kb on + strand, within GFF217at 224.702 kb on + strand, within GFF217at 224.702 kb on + strand, within GFF217at 224.702 kb on + strand, within GFF217at 224.702 kb on + strand, within GFF217at 224.702 kb on + strand, within GFF217at 224.710 kb on - strand, within GFF217at 224.710 kb on - strand, within GFF217at 224.710 kb on - strand, within GFF217at 224.730 kb on - strand, within GFF217at 224.797 kb on - strand, within GFF217at 224.844 kb on - strand, within GFF217at 224.863 kb on + strand, within GFF217at 224.975 kb on + strand, within GFF217at 224.975 kb on + strand, within GFF217at 225.065 kb on - strand, within GFF217at 225.078 kb on - strand, within GFF217at 225.100 kb on - strand, within GFF217at 225.110 kb on + strand, within GFF217at 225.136 kb on + strand, within GFF217at 225.144 kb on - strand, within GFF217at 225.188 kb on + strand, within GFF217at 225.189 kb on + strand, within GFF217at 225.197 kb on - strand, within GFF217at 225.222 kb on + strand, within GFF217at 225.278 kb on + strand, within GFF217at 225.351 kb on + strandat 225.361 kb on + strandat 225.374 kb on + strandat 225.395 kb on + strandat 225.403 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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222,430 + GFF215 0.65 -3.1
222,438 - GFF215 0.65 -2.4
222,440 - GFF215 0.65 -2.0
222,440 - GFF215 0.65 -2.0
222,471 - GFF215 0.66 -2.5
222,522 + GFF215 0.68 -0.8
222,528 - GFF215 0.69 -0.6
222,530 + GFF215 0.69 -1.2
222,530 - GFF215 0.69 -3.3
222,530 - GFF215 0.69 -2.2
222,549 + GFF215 0.69 -2.3
222,562 - GFF215 0.70 -2.0
222,577 + GFF215 0.70 -3.3
222,587 + GFF215 0.71 -1.7
222,587 + GFF215 0.71 -1.5
222,592 + GFF215 0.71 -2.8
222,592 + GFF215 0.71 -1.3
222,600 - GFF215 0.71 -1.9
222,600 - GFF215 0.71 -0.9
222,622 + GFF215 0.72 -2.0
222,626 - GFF215 0.72 -0.4
222,630 - GFF215 0.72 -3.8
222,636 - GFF215 0.73 -3.7
222,638 + GFF215 0.73 +0.4
222,638 + GFF215 0.73 -2.0
222,696 + GFF215 0.75 -1.8
222,762 - GFF215 0.78 -2.2
222,834 + GFF215 0.80 -1.2
222,856 + GFF215 0.81 -0.8
222,866 + GFF215 0.82 +0.8
222,866 - GFF215 0.82 -2.9
222,895 + GFF215 0.83 -0.9
222,908 - GFF215 0.83 -2.2
222,913 - GFF215 0.83 -1.3
222,934 - GFF215 0.84 -1.5
222,936 + GFF215 0.84 -1.5
222,937 + GFF215 0.84 -1.8
222,957 - GFF215 0.85 -2.0
222,963 - GFF215 0.85 -0.5
222,971 + GFF215 0.86 -2.0
222,979 - GFF215 0.86 -1.8
223,004 + GFF215 0.87 -0.6
223,004 + GFF215 0.87 -2.7
223,004 + GFF215 0.87 -0.9
223,004 + GFF215 0.87 -1.6
223,004 + GFF215 0.87 -2.8
223,004 + GFF215 0.87 -1.2
223,004 + GFF215 0.87 -0.8
223,004 + GFF215 0.87 -2.4
223,004 + GFF215 0.87 -0.2
223,004 + GFF215 0.87 -1.4
223,004 + GFF215 0.87 -1.0
223,004 + GFF215 0.87 -2.9
223,012 - GFF215 0.87 -2.3
223,012 - GFF215 0.87 -1.6
223,012 - GFF215 0.87 -3.0
223,012 - GFF215 0.87 -2.7
223,012 - GFF215 0.87 -1.8
223,026 - GFF215 0.88 -2.2
223,026 - GFF215 0.88 -3.1
223,026 - GFF215 0.88 -2.1
223,047 + GFF215 0.88 -3.3
223,052 + GFF215 0.89 -0.9
223,055 - GFF215 0.89 -2.2
223,055 - GFF215 0.89 -1.8
223,055 - GFF215 0.89 -2.4
223,065 - GFF215 0.89 -1.9
223,097 + -0.8
223,105 - -0.5
223,110 - -1.5
223,115 + -1.4
223,164 + -2.3
223,172 - -1.5
223,172 - -1.9
223,182 + +0.4
223,182 - -2.4
223,246 - -2.5
223,255 + -2.0
223,263 - -0.8
223,314 + -0.4
223,325 + -0.8
223,335 - -2.6
223,340 - -1.0
223,363 + +0.6
223,363 + +1.0
223,381 - +0.0
223,381 - +0.5
223,403 - +0.5
223,414 - +0.6
223,458 - -1.0
223,458 - -0.9
223,458 - +0.2
223,469 + -0.9
223,506 + -1.0
223,509 - -1.7
223,509 - -2.5
223,509 - -2.6
223,509 - -1.0
223,509 - -2.1
223,509 - -1.3
223,563 + GFF216 0.13 -2.6
223,620 - GFF216 0.18 -1.6
223,642 - GFF216 0.20 -0.7
223,671 + GFF216 0.23 -1.9
223,677 + GFF216 0.24 -1.0
223,677 + GFF216 0.24 -3.1
223,684 - GFF216 0.24 -1.2
223,689 - GFF216 0.25 -0.6
223,707 + GFF216 0.26 -2.3
223,727 + GFF216 0.28 -2.0
223,727 + GFF216 0.28 -2.5
223,730 - GFF216 0.29 +0.4
223,732 + GFF216 0.29 -2.1
223,732 + GFF216 0.29 -1.8
223,732 + GFF216 0.29 -1.4
223,732 + GFF216 0.29 -1.5
223,740 - GFF216 0.30 -1.0
223,740 - GFF216 0.30 -1.8
223,740 - GFF216 0.30 -1.2
223,740 - GFF216 0.30 -1.2
223,740 - GFF216 0.30 -1.8
223,751 + GFF216 0.31 -1.1
223,759 - GFF216 0.31 -2.4
223,764 - GFF216 0.32 -0.9
223,764 - GFF216 0.32 -1.5
223,771 + GFF216 0.33 -2.6
223,771 + GFF216 0.33 -2.8
223,779 - GFF216 0.33 +0.1
223,779 - GFF216 0.33 -2.3
223,779 - GFF216 0.33 +0.0
223,779 - GFF216 0.33 -0.3
223,779 - GFF216 0.33 -1.4
223,779 - GFF216 0.33 -2.0
223,831 - GFF216 0.38 -1.7
223,854 - GFF216 0.40 -2.0
223,874 - GFF216 0.42 -1.7
223,926 - GFF216 0.47 -2.9
224,055 - GFF216 0.60 -1.0
224,061 - GFF216 0.60 -2.3
224,186 + GFF216 0.72 -1.3
224,194 - GFF216 0.73 -1.4
224,194 - GFF216 0.73 +0.4
224,244 + GFF216 0.78 -0.6
224,246 - GFF216 0.78 -1.0
224,246 - GFF216 0.78 -1.5
224,274 - GFF216 0.81 -0.2
224,288 - GFF216 0.82 -2.8
224,298 + GFF216 0.83 -2.1
224,304 + GFF216 0.83 -2.4
224,312 - GFF216 0.84 -0.8
224,331 - GFF216 0.86 -0.9
224,353 + GFF216 0.88 -1.5
224,353 + GFF216 0.88 -2.0
224,388 - -0.2
224,406 + -3.1
224,408 + -0.2
224,416 - -2.2
224,434 - -3.3
224,514 + -2.0
224,539 + -2.0
224,539 + -2.1
224,547 - -1.3
224,547 - -1.8
224,608 - GFF217 0.14 -2.7
224,666 - GFF217 0.21 -3.7
224,697 + GFF217 0.24 -2.5
224,702 + GFF217 0.25 -2.8
224,702 + GFF217 0.25 -3.4
224,702 + GFF217 0.25 -1.6
224,702 + GFF217 0.25 -0.2
224,702 + GFF217 0.25 -3.4
224,702 + GFF217 0.25 -2.8
224,710 - GFF217 0.25 -0.8
224,710 - GFF217 0.25 -2.4
224,710 - GFF217 0.25 -2.5
224,730 - GFF217 0.28 -0.9
224,797 - GFF217 0.35 -2.5
224,844 - GFF217 0.40 -1.7
224,863 + GFF217 0.42 -2.0
224,975 + GFF217 0.54 -3.7
224,975 + GFF217 0.54 -0.7
225,065 - GFF217 0.63 -2.0
225,078 - GFF217 0.65 -2.0
225,100 - GFF217 0.67 -2.3
225,110 + GFF217 0.68 +0.7
225,136 + GFF217 0.71 -1.4
225,144 - GFF217 0.72 -3.2
225,188 + GFF217 0.77 -3.4
225,189 + GFF217 0.77 -2.3
225,197 - GFF217 0.78 -2.2
225,222 + GFF217 0.80 -2.7
225,278 + GFF217 0.86 -2.6
225,351 + -1.3
225,361 + -1.4
225,374 + -0.2
225,395 + -0.7
225,403 - -0.5

Or see this region's nucleotide sequence