Strain Fitness in Sphingobium sp. HT1-2 around GFF2034

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,063,537	-		GFF2033	0.54	-1.0
2,063,546	-		GFF2033	0.54	-0.2
2,063,610	+		GFF2033	0.57	+0.1
2,063,610	+		GFF2033	0.57	-0.7
2,063,618	-		GFF2033	0.58	+0.3
2,063,618	-		GFF2033	0.58	-0.0
2,063,632	+		GFF2033	0.59	-2.0
2,063,633	-		GFF2033	0.59	+1.4
2,063,633	-		GFF2033	0.59	-1.1
2,063,640	-		GFF2033	0.59	-1.0
2,063,645	-		GFF2033	0.59	-0.4
2,063,645	-		GFF2033	0.59	-0.3
2,063,645	-		GFF2033	0.59	+0.6
2,063,665	+		GFF2033	0.60	+0.0
2,063,677	+		GFF2033	0.61	+0.8
2,063,677	+		GFF2033	0.61	+0.5
2,063,704	+		GFF2033	0.62	-0.6
2,063,704	+		GFF2033	0.62	+0.7
2,063,704	+		GFF2033	0.62	+1.1
2,063,743	+		GFF2033	0.64	-0.7
2,063,791	+		GFF2033	0.67	-1.6
2,063,794	-		GFF2033	0.67	-0.0
2,063,799	-		GFF2033	0.67	-2.4
2,063,799	-		GFF2033	0.67	+1.0
2,063,803	+		GFF2033	0.68	+0.7
2,063,806	-		GFF2033	0.68	+0.7
2,063,816	-		GFF2033	0.68	+0.5
2,063,932	+		GFF2033	0.74	-0.6
2,063,959	-		GFF2033	0.76	-0.1
2,064,039	+		GFF2033	0.80	-1.4
2,064,051	+		GFF2033	0.81	-0.1
2,064,059	+		GFF2033	0.81	+1.0
2,064,059	+		GFF2033	0.81	-0.1
2,064,067	-		GFF2033	0.81	+1.3
2,064,087	+		GFF2033	0.82	-0.5
2,064,087	+		GFF2033	0.82	+0.7
2,064,087	+		GFF2033	0.82	+1.1
2,064,095	-		GFF2033	0.83	+1.2
2,064,095	-		GFF2033	0.83	+1.2
2,064,106	+		GFF2033	0.83	-0.5
2,064,111	+		GFF2033	0.84	-1.0
2,064,138	-		GFF2033	0.85	+0.2
2,064,192	-		GFF2033	0.88	+0.6
2,064,225	+		GFF2033	0.90	+0.1
2,064,225	+		GFF2033	0.90	+0.2
2,064,227	+		GFF2033	0.90	-0.4
2,064,233	-				-0.3
2,064,233	-				-0.2
2,064,233	-				+0.7
2,064,233	-				+1.0
2,064,233	-				-0.2
2,064,233	-				+0.3
2,064,233	-				-1.3
2,064,233	-				-1.0
2,064,233	-				-0.8
2,064,233	-				-0.2
2,064,250	-				-0.1
2,064,276	+				-0.3
2,064,335	+				+0.4
2,064,335	+				+0.3
2,064,343	-				+0.2
2,064,343	-				+1.6
2,064,343	-				+2.0
2,064,343	-				+0.5
2,064,343	-				+0.8
2,064,343	-				-0.5
2,064,353	-				-1.3
2,064,403	+				+0.8
2,064,432	-				+1.1
2,064,500	+				-2.0
2,064,543	+				-1.7
2,064,568	-		GFF2034	0.10	-1.7
2,064,583	-		GFF2034	0.11	-1.0
2,064,602	+		GFF2034	0.13	-1.8
2,064,627	-		GFF2034	0.15	+0.6
2,064,658	-		GFF2034	0.17	-2.2
2,064,702	+		GFF2034	0.20	-1.6
2,064,709	+		GFF2034	0.20	-0.1
2,064,717	-		GFF2034	0.21	+1.4
2,064,734	+		GFF2034	0.22	-1.9
2,064,758	-		GFF2034	0.24	+0.4
2,064,789	-		GFF2034	0.26	-0.9
2,064,789	-		GFF2034	0.26	-1.0
2,064,885	-		GFF2034	0.32	-2.0
2,064,888	-		GFF2034	0.33	-2.4
2,064,915	-		GFF2034	0.34	-1.4
2,064,915	-		GFF2034	0.34	-1.6
2,064,939	-		GFF2034	0.36	-0.6
2,064,942	+		GFF2034	0.36	-2.3
2,064,944	-		GFF2034	0.36	-0.6
2,064,950	-		GFF2034	0.37	+0.1
2,064,968	-		GFF2034	0.38	-1.6
2,064,968	-		GFF2034	0.38	-1.0
2,065,016	-		GFF2034	0.41	-0.5
2,065,066	+		GFF2034	0.45	-2.1
2,065,066	+		GFF2034	0.45	+0.4
2,065,066	+		GFF2034	0.45	-1.4
2,065,066	+		GFF2034	0.45	-2.3
2,065,066	+		GFF2034	0.45	-0.6
2,065,066	+		GFF2034	0.45	-1.8
2,065,074	-		GFF2034	0.45	-2.2
2,065,074	-		GFF2034	0.45	-0.9
2,065,074	-		GFF2034	0.45	-1.5
2,065,074	-		GFF2034	0.45	-0.7
2,065,140	-		GFF2034	0.50	-1.6
2,065,142	-		GFF2034	0.50	-0.1
2,065,143	-		GFF2034	0.50	-1.6
2,065,177	-		GFF2034	0.53	-0.8
2,065,178	-		GFF2034	0.53	-1.7
2,065,178	-		GFF2034	0.53	+0.1
2,065,178	-		GFF2034	0.53	-0.6
2,065,214	+		GFF2034	0.55	-0.2
2,065,218	-		GFF2034	0.55	-2.7
2,065,220	+		GFF2034	0.56	+0.6
2,065,296	+		GFF2034	0.61	-1.7
2,065,304	-		GFF2034	0.61	-1.8
2,065,370	+		GFF2034	0.66	-2.4
2,065,370	+		GFF2034	0.66	-1.7
2,065,381	+		GFF2034	0.67	-2.6
2,065,402	-		GFF2034	0.68	-1.5
2,065,402	-		GFF2034	0.68	-2.0
2,065,404	+		GFF2034	0.68	-1.6
2,065,463	-		GFF2034	0.72	-2.1
2,065,495	+		GFF2034	0.75	-0.9
2,065,573	+		GFF2034	0.80	-2.0
2,065,581	-		GFF2034	0.80	-1.6
2,065,587	-		GFF2034	0.81	-1.5
2,065,674	-		GFF2034	0.87	-1.8
2,065,676	+		GFF2034	0.87	+0.4
2,065,682	-		GFF2034	0.87	-0.1
2,065,691	+		GFF2034	0.88	-1.3
2,065,696	+		GFF2034	0.88	-0.2
2,065,704	-		GFF2034	0.89	-0.2
2,065,704	-		GFF2034	0.89	+0.1
2,065,704	-		GFF2034	0.89	-1.5
2,065,704	-		GFF2034	0.89	-1.9
2,065,704	-		GFF2034	0.89	-2.0
2,065,710	-		GFF2034	0.89	-2.4
2,065,710	-		GFF2034	0.89	-2.3
2,065,710	-		GFF2034	0.89	-1.0
2,065,739	+				-0.2
2,065,752	+				-1.7
2,065,754	-				+0.6
2,065,754	-				-0.4
2,065,760	-				-1.9
2,065,811	+				+0.2
2,065,816	+				-0.2
2,065,816	+				-1.7
2,065,816	+				+0.5
2,065,824	-				+0.4
2,065,824	-				-1.2
2,065,824	-				-2.0
2,065,824	-				-0.7
2,065,824	-				-2.0
2,065,824	-				+0.2
2,065,824	-				-2.6
2,065,824	-				-1.4
2,065,857	-				-0.9
2,065,896	+				-1.6
2,065,919	-				-0.1
2,065,981	+				-0.0
2,065,984	-				-0.2
2,066,016	+		GFF2035	0.11	+0.7
2,066,024	-		GFF2035	0.12	-0.3
2,066,024	-		GFF2035	0.12	+0.3
2,066,049	-		GFF2035	0.14	+0.1
2,066,057	-		GFF2035	0.14	+1.0
2,066,059	+		GFF2035	0.14	+2.0
2,066,077	-		GFF2035	0.16	+0.3
2,066,094	+		GFF2035	0.17	+0.2
2,066,133	-		GFF2035	0.20	+0.1
2,066,211	-		GFF2035	0.27	+0.8
2,066,216	-		GFF2035	0.27	-0.8
2,066,227	+		GFF2035	0.28	-1.5
2,066,227	+		GFF2035	0.28	-0.7
2,066,227	+		GFF2035	0.28	+0.2
2,066,227	+		GFF2035	0.28	-0.2
2,066,235	-		GFF2035	0.28	-0.3
2,066,235	-		GFF2035	0.28	+0.6
2,066,237	+		GFF2035	0.29	-0.7
2,066,245	-		GFF2035	0.29	+0.2
2,066,245	-		GFF2035	0.29	+1.2
2,066,258	+		GFF2035	0.30	-1.0
2,066,266	+		GFF2035	0.31	+1.8
2,066,266	+		GFF2035	0.31	-0.1
2,066,268	-		GFF2035	0.31	+0.3
2,066,271	+		GFF2035	0.31	-0.2
2,066,271	+		GFF2035	0.31	-1.4
2,066,274	-		GFF2035	0.32	+0.5
2,066,274	-		GFF2035	0.32	+0.1
2,066,274	-		GFF2035	0.32	-1.3
2,066,274	-		GFF2035	0.32	-0.4
2,066,284	-		GFF2035	0.32	-1.3
2,066,284	-		GFF2035	0.32	-0.4
2,066,293	+		GFF2035	0.33	+0.7
2,066,293	+		GFF2035	0.33	-2.7
2,066,306	-		GFF2035	0.34	-1.2
2,066,306	-		GFF2035	0.34	+0.6
2,066,348	-		GFF2035	0.37	+2.0
2,066,353	-		GFF2035	0.38	+0.4
2,066,456	+		GFF2035	0.46	+0.5
2,066,546	-		GFF2035	0.53	+1.2
2,066,548	+		GFF2035	0.53	+0.1
2,066,556	-		GFF2035	0.54	+0.8
2,066,556	-		GFF2035	0.54	+1.0
2,066,568	+		GFF2035	0.55	-0.2
2,066,570	-		GFF2035	0.55	-1.1
2,066,576	-		GFF2035	0.55	+0.4
2,066,594	+		GFF2035	0.57	-0.1
2,066,626	-		GFF2035	0.59	-0.5
2,066,626	-		GFF2035	0.59	-0.2
2,066,631	-		GFF2035	0.60	+0.8
2,066,635	-		GFF2035	0.60	-0.3
2,066,645	-		GFF2035	0.61	-0.8
2,066,645	-		GFF2035	0.61	-2.7
2,066,645	-		GFF2035	0.61	-0.7
2,066,645	-		GFF2035	0.61	+0.1
2,066,653	+		GFF2035	0.62	-1.2
2,066,653	+		GFF2035	0.62	-0.8
2,066,653	+		GFF2035	0.62	-1.2
2,066,653	+		GFF2035	0.62	-1.4
2,066,653	+		GFF2035	0.62	-2.4
2,066,661	-		GFF2035	0.62	-0.2
2,066,661	-		GFF2035	0.62	+1.6
2,066,661	-		GFF2035	0.62	-0.4
2,066,661	-		GFF2035	0.62	-0.1
2,066,687	+		GFF2035	0.64	+0.2
2,066,703	+		GFF2035	0.66	-1.0
2,066,816	-		GFF2035	0.75	-0.6
2,066,816	-		GFF2035	0.75	+1.0
2,066,823	-		GFF2035	0.75	+0.6
2,066,835	+		GFF2035	0.76	+0.4
2,066,860	-		GFF2035	0.78	+0.2