Strain Fitness in Sphingobium sp. HT1-2 around GFF1995

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,014,373	-		GFF1993	0.39	-0.1
2,014,380	+		GFF1993	0.40	-1.7
2,014,387	+		GFF1993	0.41	+1.1
2,014,388	-		GFF1993	0.41	+0.9
2,014,414	+		GFF1993	0.43	+0.1
2,014,421	+		GFF1993	0.44	-0.8
2,014,452	+		GFF1993	0.46	+0.2
2,014,453	-		GFF1993	0.46	-0.0
2,014,482	-		GFF1993	0.49	-2.1
2,014,482	-		GFF1993	0.49	-0.3
2,014,487	+		GFF1993	0.50	-1.1
2,014,532	-		GFF1993	0.54	-0.6
2,014,556	-		GFF1993	0.56	-0.5
2,014,571	+		GFF1993	0.57	-0.7
2,014,630	+		GFF1993	0.62	+1.8
2,014,633	-		GFF1993	0.62	+0.4
2,014,638	-		GFF1993	0.63	+0.2
2,014,638	-		GFF1993	0.63	+1.0
2,014,646	+		GFF1993	0.64	+0.2
2,014,768	+		GFF1993	0.74	-0.3
2,014,768	+		GFF1993	0.74	+0.8
2,014,770	+		GFF1993	0.75	+0.6
2,014,776	-		GFF1993	0.75	+0.8
2,014,776	-		GFF1993	0.75	-0.8
2,014,776	-		GFF1993	0.75	+1.3
2,014,777	-		GFF1993	0.75	-2.0
2,014,786	+		GFF1993	0.76	+0.2
2,014,802	-		GFF1993	0.78	-0.2
2,014,814	+		GFF1993	0.79	+1.7
2,014,816	-		GFF1993	0.79	-1.4
2,014,816	-		GFF1993	0.79	+0.7
2,014,818	+		GFF1993	0.79	-0.9
2,014,818	+		GFF1993	0.79	+0.0
2,014,823	+		GFF1993	0.79	-0.7
2,014,823	+		GFF1993	0.79	+0.2
2,014,823	+		GFF1993	0.79	+1.0
2,014,823	+		GFF1993	0.79	-0.2
2,014,823	+		GFF1993	0.79	+1.9
2,014,823	+		GFF1993	0.79	-1.3
2,014,823	+		GFF1993	0.79	+0.2
2,014,826	-		GFF1993	0.80	+0.4
2,014,826	-		GFF1993	0.80	+0.1
2,014,831	-		GFF1993	0.80	+1.0
2,014,831	-		GFF1993	0.80	+1.3
2,014,831	-		GFF1993	0.80	+0.3
2,014,831	-		GFF1993	0.80	+0.1
2,014,836	-		GFF1993	0.81	+0.4
2,014,894	-		GFF1993	0.86	-0.0
2,014,942	-				-0.9
2,014,998	-				-0.9
2,015,020	+				-0.6
2,015,068	+				+0.9
2,015,072	+				+0.3
2,015,076	-				+0.6
2,015,076	-				+0.3
2,015,080	-				-2.1
2,015,082	+				-0.5
2,015,126	+		GFF1994	0.28	+0.6
2,015,135	+		GFF1994	0.35	+0.8
2,015,143	-		GFF1994	0.41	-0.4
2,015,143	-		GFF1994	0.41	+0.7
2,015,163	+		GFF1994	0.57	-1.6
2,015,178	+		GFF1994	0.69	-1.4
2,015,178	+		GFF1994	0.69	+0.0
2,015,178	+		GFF1994	0.69	+0.1
2,015,178	+		GFF1994	0.69	-1.1
2,015,183	+		GFF1994	0.73	+0.1
2,015,186	-		GFF1994	0.75	-0.4
2,015,191	-		GFF1994	0.79	-1.1
2,015,199	-		GFF1994	0.86	-0.7
2,015,212	+				-2.3
2,015,212	+				-0.6
2,015,229	+				+0.2
2,015,237	-				+0.2
2,015,251	+				-1.1
2,015,251	+				-1.4
2,015,251	+				-0.9
2,015,253	+				-1.1
2,015,258	-				+1.0
2,015,259	-				+0.5
2,015,259	-				+0.5
2,015,259	-				+0.2
2,015,259	-				+0.4
2,015,259	-				+0.4
2,015,308	+				-1.0
2,015,308	+				+0.3
2,015,316	-				+0.5
2,015,316	-				-2.3
2,015,318	+				-0.4
2,015,443	-				+0.0
2,015,468	-				-0.3
2,015,484	+				-0.0
2,015,513	-				-0.1
2,015,516	-		GFF1995	0.10	+1.3
2,015,517	+		GFF1995	0.10	+1.3
2,015,529	+		GFF1995	0.11	-0.6
2,015,529	+		GFF1995	0.11	+0.1
2,015,534	+		GFF1995	0.11	+0.3
2,015,534	+		GFF1995	0.11	-0.8
2,015,534	+		GFF1995	0.11	+0.1
2,015,539	+		GFF1995	0.12	-0.5
2,015,539	+		GFF1995	0.12	+1.1
2,015,542	-		GFF1995	0.12	+0.0
2,015,547	-		GFF1995	0.12	-0.7
2,015,547	-		GFF1995	0.12	+0.5
2,015,547	-		GFF1995	0.12	-0.1
2,015,547	-		GFF1995	0.12	+0.4
2,015,569	+		GFF1995	0.14	-0.9
2,015,592	+		GFF1995	0.15	+0.9
2,015,594	+		GFF1995	0.16	+0.2
2,015,594	+		GFF1995	0.16	-1.8
2,015,595	-		GFF1995	0.16	-0.6
2,015,602	-		GFF1995	0.16	-0.6
2,015,606	+		GFF1995	0.16	+0.6
2,015,614	+		GFF1995	0.17	-0.1
2,015,614	-		GFF1995	0.17	+0.5
2,015,635	+		GFF1995	0.18	-1.1
2,015,635	+		GFF1995	0.18	-0.9
2,015,640	+		GFF1995	0.19	+1.1
2,015,643	-		GFF1995	0.19	+1.3
2,015,643	-		GFF1995	0.19	-2.7
2,015,643	-		GFF1995	0.19	-0.5
2,015,643	-		GFF1995	0.19	-0.4
2,015,643	-		GFF1995	0.19	+0.3
2,015,645	-		GFF1995	0.19	+1.3
2,015,661	-		GFF1995	0.20	+0.4
2,015,702	-		GFF1995	0.23	-0.4
2,015,708	+		GFF1995	0.23	+1.0
2,015,708	+		GFF1995	0.23	+0.5
2,015,716	-		GFF1995	0.24	-0.3
2,015,730	+		GFF1995	0.25	-0.9
2,015,745	+		GFF1995	0.26	-1.3
2,015,795	-		GFF1995	0.30	-0.9
2,015,797	+		GFF1995	0.30	+0.9
2,015,838	-		GFF1995	0.32	-1.7
2,015,843	-		GFF1995	0.33	-0.1
2,015,845	+		GFF1995	0.33	-2.5
2,015,853	-		GFF1995	0.34	-0.3
2,015,867	-		GFF1995	0.35	+0.0
2,015,914	+		GFF1995	0.38	-0.4
2,015,923	+		GFF1995	0.38	+2.0
2,015,923	+		GFF1995	0.38	+1.4
2,016,014	+		GFF1995	0.45	+0.0
2,016,096	-		GFF1995	0.50	-0.3
2,016,144	+		GFF1995	0.54	-0.5
2,016,144	+		GFF1995	0.54	-1.6
2,016,144	+		GFF1995	0.54	-0.8
2,016,144	+		GFF1995	0.54	-0.9
2,016,144	+		GFF1995	0.54	-0.1
2,016,144	+		GFF1995	0.54	-1.0
2,016,152	-		GFF1995	0.54	+0.1
2,016,152	-		GFF1995	0.54	+0.1
2,016,152	-		GFF1995	0.54	-0.9
2,016,152	-		GFF1995	0.54	+0.4
2,016,152	-		GFF1995	0.54	+0.4
2,016,152	-		GFF1995	0.54	-0.4
2,016,152	-		GFF1995	0.54	+2.1
2,016,152	-		GFF1995	0.54	-1.2
2,016,152	-		GFF1995	0.54	-0.3
2,016,152	-		GFF1995	0.54	-0.9
2,016,152	-		GFF1995	0.54	+0.7
2,016,152	-		GFF1995	0.54	-0.2
2,016,152	-		GFF1995	0.54	+1.2
2,016,152	-		GFF1995	0.54	-2.2
2,016,152	-		GFF1995	0.54	-0.7
2,016,152	-		GFF1995	0.54	+1.2
2,016,178	+		GFF1995	0.56	-0.7
2,016,183	+		GFF1995	0.57	-0.0
2,016,208	-		GFF1995	0.58	-0.7
2,016,236	+		GFF1995	0.60	+0.2
2,016,237	-		GFF1995	0.60	-0.0
2,016,246	+		GFF1995	0.61	-0.2
2,016,246	+		GFF1995	0.61	+1.6
2,016,266	-		GFF1995	0.62	-0.7
2,016,267	-		GFF1995	0.62	-0.2
2,016,276	-		GFF1995	0.63	+0.7
2,016,318	-		GFF1995	0.66	+0.4
2,016,383	+		GFF1995	0.70	-1.0
2,016,400	-		GFF1995	0.72	+1.0
2,016,400	-		GFF1995	0.72	+0.1
2,016,407	+		GFF1995	0.72	+0.4
2,016,407	+		GFF1995	0.72	+1.7
2,016,407	+		GFF1995	0.72	-0.4
2,016,407	+		GFF1995	0.72	+0.2
2,016,432	+		GFF1995	0.74	+1.0
2,016,441	-		GFF1995	0.74	+0.7
2,016,445	+		GFF1995	0.75	+0.7
2,016,482	-		GFF1995	0.77	+0.9
2,016,484	+		GFF1995	0.77	-1.5
2,016,484	+		GFF1995	0.77	-0.2
2,016,484	+		GFF1995	0.77	-1.5
2,016,488	-		GFF1995	0.78	+0.4
2,016,489	+		GFF1995	0.78	+1.6
2,016,497	-		GFF1995	0.78	-0.7
2,016,497	-		GFF1995	0.78	-1.7
2,016,499	+		GFF1995	0.78	+0.4
2,016,499	+		GFF1995	0.78	-2.6
2,016,507	+		GFF1995	0.79	-0.7
2,016,507	+		GFF1995	0.79	+1.6
2,016,507	-		GFF1995	0.79	-0.1
2,016,511	-		GFF1995	0.79	-0.4
2,016,535	-		GFF1995	0.81	+0.0
2,016,626	+		GFF1995	0.87	-0.6
2,016,626	+		GFF1995	0.87	+1.7
2,016,626	+		GFF1995	0.87	+1.6
2,016,626	+		GFF1995	0.87	-0.6
2,016,626	+		GFF1995	0.87	-0.6
2,016,634	-		GFF1995	0.88	+1.2
2,016,634	-		GFF1995	0.88	+0.4
2,016,636	+		GFF1995	0.88	-1.6
2,016,636	+		GFF1995	0.88	+1.5
2,016,644	-		GFF1995	0.89	-0.3
2,016,651	-		GFF1995	0.89	-0.1
2,016,666	+				+1.0
2,016,745	+				-0.6
2,016,795	-				+0.3
2,016,863	-				+1.4
2,016,871	-				-0.3
2,016,888	-				+1.3
2,016,909	+				-0.7
2,016,950	+				-1.1
2,017,003	-		GFF1996	0.16	+1.3
2,017,016	-		GFF1996	0.18	+0.4
2,017,036	+		GFF1996	0.21	-0.7
2,017,039	-		GFF1996	0.22	-0.3
2,017,130	-		GFF1996	0.36	-1.2
2,017,229	+		GFF1996	0.51	+1.1
2,017,260	-		GFF1996	0.56	+0.3
2,017,336	-		GFF1996	0.68	+1.1
2,017,394	-		GFF1996	0.77	+0.9
2,017,443	-		GFF1996	0.85	+0.8
2,017,447	-		GFF1996	0.86	+0.5
2,017,447	-		GFF1996	0.86	-0.0
2,017,449	-		GFF1996	0.86	+0.0
2,017,451	+		GFF1996	0.86	+1.2
2,017,590	-				+0.5
2,017,603	+				-2.0
2,017,603	+				+1.3
2,017,603	+				-0.7
2,017,603	+				+0.1
2,017,603	+				-0.1
2,017,611	-				+0.5
2,017,616	+				-1.2
2,017,621	+				+1.8
2,017,662	+				+0.7
2,017,664	-		GFF1997	0.10	+0.1
2,017,727	-		GFF1997	0.23	-0.3
2,017,727	-		GFF1997	0.23	-2.4
2,017,727	-		GFF1997	0.23	-0.6
2,017,727	-		GFF1997	0.23	+0.9
2,017,737	-		GFF1997	0.25	-1.3
2,017,773	+		GFF1997	0.32	-0.6