Strain Fitness in Sphingobium sp. HT1-2 around GFF1993

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
2,012,970	+		GFF1990	0.87	-0.7
2,012,974	-		GFF1990	0.88	-0.4
2,012,975	-		GFF1990	0.88	-0.0
2,012,982	+		GFF1990	0.88	-2.3
2,012,983	-		GFF1990	0.88	+0.8
2,012,984	-		GFF1990	0.88	-0.7
2,012,991	-		GFF1990	0.89	+1.1
2,012,992	+		GFF1990	0.89	-0.4
2,013,013	+				-0.7
2,013,033	-				-0.5
2,013,056	-				-1.3
2,013,081	+				-1.3
2,013,081	+				+0.2
2,013,089	-				-1.6
2,013,111	-				+0.5
2,013,111	-				-1.7
2,013,116	-				-0.3
2,013,116	-				+0.7
2,013,121	-				-1.1
2,013,122	+				+1.1
2,013,131	-				-0.4
2,013,131	-				-1.9
2,013,150	+				-1.3
2,013,160	+				-1.3
2,013,168	-				+1.6
2,013,168	-				-0.8
2,013,170	+				-0.1
2,013,173	-				-0.5
2,013,177	+				+0.7
2,013,185	+		GFF1991	0.13	+0.4
2,013,196	+		GFF1991	0.16	-0.2
2,013,196	+		GFF1991	0.16	-1.6
2,013,204	-		GFF1991	0.19	+0.4
2,013,212	+		GFF1991	0.22	-1.5
2,013,221	-		GFF1991	0.25	+0.7
2,013,221	-		GFF1991	0.25	-0.9
2,013,234	+		GFF1991	0.30	+1.4
2,013,243	+		GFF1991	0.33	-1.4
2,013,251	-		GFF1991	0.36	-0.1
2,013,265	+		GFF1991	0.41	-1.9
2,013,267	+		GFF1991	0.41	+0.5
2,013,274	-		GFF1991	0.44	-0.1
2,013,277	+		GFF1991	0.45	-1.3
2,013,285	-		GFF1991	0.48	-0.4
2,013,285	-		GFF1991	0.48	+0.4
2,013,285	-		GFF1991	0.48	-2.0
2,013,343	-		GFF1991	0.68	-0.3
2,013,347	+		GFF1991	0.69	-0.1
2,013,347	+		GFF1991	0.69	-1.4
2,013,352	+		GFF1991	0.71	+0.5
2,013,355	-		GFF1991	0.72	-0.6
2,013,360	-		GFF1991	0.74	-0.1
2,013,366	+		GFF1991	0.76	-0.6
2,013,366	+		GFF1991	0.76	+0.7
2,013,366	+		GFF1991	0.76	+0.3
2,013,371	+		GFF1991	0.78	+0.2
2,013,379	-		GFF1991	0.81	-0.2
2,013,381	-		GFF1991	0.81	+0.9
2,013,390	+		GFF1991	0.85	-1.6
2,013,398	-		GFF1991	0.87	-0.4
2,013,443	+				-0.4
2,013,450	+				-1.1
2,013,460	+				+0.3
2,013,465	+				+0.9
2,013,465	+				-1.4
2,013,465	+				-0.3
2,013,468	-				+0.9
2,013,468	-				-1.9
2,013,468	-				-2.2
2,013,468	-				+0.4
2,013,468	-				-2.8
2,013,468	-				+1.5
2,013,473	-		GFF1992	0.11	-0.7
2,013,473	-		GFF1992	0.11	-1.8
2,013,484	+		GFF1992	0.14	+0.6
2,013,484	+		GFF1992	0.14	-0.4
2,013,489	+		GFF1992	0.15	+1.7
2,013,492	-		GFF1992	0.16	-0.9
2,013,566	+		GFF1992	0.37	+0.2
2,013,566	+		GFF1992	0.37	-1.2
2,013,566	+		GFF1992	0.37	+0.4
2,013,566	+		GFF1992	0.37	-1.5
2,013,566	+		GFF1992	0.37	+0.7
2,013,566	+		GFF1992	0.37	+0.9
2,013,566	+		GFF1992	0.37	+0.5
2,013,566	+		GFF1992	0.37	+0.2
2,013,571	+		GFF1992	0.38	-0.5
2,013,574	-		GFF1992	0.39	-0.6
2,013,574	-		GFF1992	0.39	+0.9
2,013,574	-		GFF1992	0.39	-0.9
2,013,574	-		GFF1992	0.39	+0.5
2,013,574	-		GFF1992	0.39	-0.3
2,013,574	-		GFF1992	0.39	-2.1
2,013,574	-		GFF1992	0.39	-0.8
2,013,574	-		GFF1992	0.39	+0.1
2,013,598	-		GFF1992	0.46	+0.2
2,013,654	-		GFF1992	0.61	+1.1
2,013,656	+		GFF1992	0.62	+1.1
2,013,660	-		GFF1992	0.63	+0.9
2,013,667	+		GFF1992	0.65	-1.9
2,013,675	-		GFF1992	0.67	-0.9
2,013,677	-		GFF1992	0.68	+0.1
2,013,694	-		GFF1992	0.73	+1.1
2,013,694	-		GFF1992	0.73	-0.0
2,013,701	+		GFF1992	0.75	+1.4
2,013,709	-		GFF1992	0.77	+0.9
2,013,709	-		GFF1992	0.77	-1.2
2,013,709	-		GFF1992	0.77	-1.8
2,013,723	+		GFF1992	0.81	+0.8
2,013,731	-		GFF1992	0.83	+0.3
2,013,731	-		GFF1992	0.83	-2.3
2,013,731	-		GFF1992	0.83	+1.3
2,013,731	-		GFF1992	0.83	+0.6
2,013,761	+				-0.0
2,013,761	+				+0.2
2,013,761	+				-0.3
2,013,761	+				+1.4
2,013,761	+				-1.7
2,013,766	+				-0.7
2,013,769	+				-2.5
2,013,769	+				-1.1
2,013,769	+				+0.3
2,013,769	-				-0.3
2,013,769	-				-0.0
2,013,777	-				-0.9
2,013,777	-				-1.8
2,013,777	-				-1.3
2,013,779	-				+1.1
2,013,790	+				-0.5
2,013,796	-				-0.1
2,013,815	-				-0.0
2,013,821	+				-0.9
2,013,829	-				-0.6
2,013,847	+				-0.8
2,013,847	+				+1.2
2,013,855	-				+0.2
2,013,855	-				-0.3
2,013,855	-				-0.3
2,013,855	-				-1.0
2,013,855	-				+1.1
2,013,855	-				-0.5
2,013,855	-				+0.4
2,013,865	-				+0.4
2,013,865	-				+0.6
2,013,865	-				-1.1
2,013,866	+				-0.8
2,013,873	-				-1.4
2,013,874	-				-1.0
2,013,878	-				-1.1
2,013,884	-				-2.1
2,013,891	+				-0.7
2,013,910	+				+0.4
2,013,958	+				-0.7
2,013,958	+				+1.7
2,013,966	-				-0.0
2,013,971	+				+1.1
2,013,971	+				-0.2
2,013,974	-				+0.4
2,013,989	-				-0.2
2,014,002	+				+1.1
2,014,007	+				+0.7
2,014,050	+		GFF1993	0.11	-0.4
2,014,063	+		GFF1993	0.12	-1.5
2,014,068	+		GFF1993	0.12	-0.4
2,014,073	+		GFF1993	0.13	-1.7
2,014,073	+		GFF1993	0.13	-1.5
2,014,073	+		GFF1993	0.13	-0.4
2,014,073	+		GFF1993	0.13	+0.7
2,014,073	+		GFF1993	0.13	-0.5
2,014,081	-		GFF1993	0.13	+0.2
2,014,081	-		GFF1993	0.13	-0.5
2,014,081	-		GFF1993	0.13	-1.2
2,014,081	-		GFF1993	0.13	+0.5
2,014,087	+		GFF1993	0.14	+0.2
2,014,098	+		GFF1993	0.15	+0.3
2,014,106	-		GFF1993	0.16	+1.3
2,014,116	+		GFF1993	0.17	-1.1
2,014,124	-		GFF1993	0.17	-0.7
2,014,131	-		GFF1993	0.18	+0.1
2,014,159	+		GFF1993	0.20	-0.6
2,014,167	+		GFF1993	0.21	+0.1
2,014,174	+		GFF1993	0.22	-0.3
2,014,174	+		GFF1993	0.22	+1.5
2,014,174	+		GFF1993	0.22	-1.3
2,014,174	+		GFF1993	0.22	+0.4
2,014,174	+		GFF1993	0.22	+1.9
2,014,182	-		GFF1993	0.22	-2.1
2,014,182	-		GFF1993	0.22	-0.6
2,014,182	-		GFF1993	0.22	-0.4
2,014,192	-		GFF1993	0.23	-1.0
2,014,220	-		GFF1993	0.26	-0.8
2,014,233	-		GFF1993	0.27	+0.3
2,014,240	+		GFF1993	0.28	-0.6
2,014,248	-		GFF1993	0.28	-1.4
2,014,248	-		GFF1993	0.28	-0.9
2,014,272	+		GFF1993	0.30	-1.9
2,014,272	+		GFF1993	0.30	+0.1
2,014,272	+		GFF1993	0.30	-2.1
2,014,277	+		GFF1993	0.31	-0.3
2,014,280	-		GFF1993	0.31	-0.9
2,014,280	-		GFF1993	0.31	-1.3
2,014,280	-		GFF1993	0.31	-0.7
2,014,296	+		GFF1993	0.33	+0.9
2,014,309	-		GFF1993	0.34	-0.5
2,014,318	-		GFF1993	0.34	-0.8
2,014,333	-		GFF1993	0.36	+1.0
2,014,333	-		GFF1993	0.36	+0.2
2,014,337	-		GFF1993	0.36	-1.4
2,014,373	-		GFF1993	0.39	-0.2
2,014,380	+		GFF1993	0.40	-1.8
2,014,414	+		GFF1993	0.43	-0.0
2,014,421	+		GFF1993	0.44	-0.9
2,014,424	-		GFF1993	0.44	+1.7
2,014,452	+		GFF1993	0.46	+0.1
2,014,453	-		GFF1993	0.46	-0.2
2,014,474	-		GFF1993	0.48	-0.4
2,014,482	-		GFF1993	0.49	-2.3
2,014,482	-		GFF1993	0.49	-0.4
2,014,487	+		GFF1993	0.50	-1.3
2,014,487	-		GFF1993	0.50	-1.1
2,014,497	-		GFF1993	0.50	-2.1
2,014,497	-		GFF1993	0.50	+0.5
2,014,514	+		GFF1993	0.52	-1.6
2,014,514	+		GFF1993	0.52	-1.1
2,014,522	-		GFF1993	0.53	+1.1
2,014,532	-		GFF1993	0.54	-0.7
2,014,556	-		GFF1993	0.56	-0.6
2,014,630	+		GFF1993	0.62	-2.1
2,014,630	+		GFF1993	0.62	+1.7
2,014,633	-		GFF1993	0.62	+0.1
2,014,633	-		GFF1993	0.62	+0.3
2,014,638	-		GFF1993	0.63	-1.3
2,014,638	-		GFF1993	0.63	+0.1
2,014,638	-		GFF1993	0.63	+0.9
2,014,646	+		GFF1993	0.64	-0.5
2,014,646	+		GFF1993	0.64	+0.1
2,014,768	+		GFF1993	0.74	+0.4
2,014,768	+		GFF1993	0.74	-0.4
2,014,768	+		GFF1993	0.74	+0.6
2,014,770	+		GFF1993	0.75	+0.4
2,014,776	-		GFF1993	0.75	+0.7
2,014,776	-		GFF1993	0.75	-0.9
2,014,776	-		GFF1993	0.75	+1.2
2,014,777	-		GFF1993	0.75	-2.1
2,014,786	+		GFF1993	0.76	-1.4
2,014,786	+		GFF1993	0.76	+0.1
2,014,786	+		GFF1993	0.76	-0.3
2,014,802	-		GFF1993	0.78	-0.3
2,014,814	+		GFF1993	0.79	+1.6
2,014,816	-		GFF1993	0.79	-1.5
2,014,816	-		GFF1993	0.79	+0.6
2,014,818	+		GFF1993	0.79	-1.0
2,014,818	+		GFF1993	0.79	-0.1
2,014,818	+		GFF1993	0.79	-0.7
2,014,823	+		GFF1993	0.79	-0.8
2,014,823	+		GFF1993	0.79	+0.1
2,014,823	+		GFF1993	0.79	+0.9
2,014,823	+		GFF1993	0.79	-0.4
2,014,823	+		GFF1993	0.79	-0.4
2,014,823	+		GFF1993	0.79	-1.4
2,014,823	+		GFF1993	0.79	+0.1
2,014,823	+		GFF1993	0.79	-0.6
2,014,826	-		GFF1993	0.80	+0.3
2,014,831	-		GFF1993	0.80	+0.7
2,014,831	-		GFF1993	0.80	+0.9
2,014,831	-		GFF1993	0.80	+1.1
2,014,831	-		GFF1993	0.80	-0.8
2,014,831	-		GFF1993	0.80	+0.2
2,014,831	-		GFF1993	0.80	-0.0
2,014,831	-		GFF1993	0.80	+0.3
2,014,836	-		GFF1993	0.81	+0.3
2,014,855	-		GFF1993	0.82	+0.1
2,014,886	+		GFF1993	0.85	+0.4
2,014,886	+		GFF1993	0.85	+0.4
2,014,894	-		GFF1993	0.86	-1.0
2,014,894	-		GFF1993	0.86	-0.1
2,014,942	-				-1.0
2,014,952	+				+1.2
2,014,958	+				-0.4
2,014,958	+				-1.9
2,014,958	+				+0.4
2,014,960	+				-1.5
2,014,960	+				-0.5
2,014,966	-				-0.1
2,014,968	-				+0.2
2,014,990	+				-2.3
2,014,998	-				-1.1
2,015,020	+				-0.7
2,015,068	+				+0.8
2,015,070	+				-0.2
2,015,072	+				+0.2
2,015,076	-				+0.5
2,015,076	-				+0.4
2,015,076	-				+0.2
2,015,080	-				-2.3
2,015,126	+		GFF1994	0.28	+0.5
2,015,126	+		GFF1994	0.28	+0.4
2,015,126	+		GFF1994	0.28	-1.6
2,015,135	+		GFF1994	0.35	+0.7
2,015,143	+		GFF1994	0.41	-1.5
2,015,143	-		GFF1994	0.41	-0.6
2,015,143	-		GFF1994	0.41	+0.6
2,015,151	-		GFF1994	0.48	-1.1
2,015,163	+		GFF1994	0.57	-0.1
2,015,163	+		GFF1994	0.57	-1.8
2,015,169	+		GFF1994	0.62	-0.1
2,015,169	+		GFF1994	0.62	-0.5
2,015,171	+		GFF1994	0.63	-1.8
2,015,177	-		GFF1994	0.68	-0.6
2,015,178	+		GFF1994	0.69	-0.4
2,015,178	+		GFF1994	0.69	-0.4
2,015,178	+		GFF1994	0.69	-1.5
2,015,178	+		GFF1994	0.69	-1.8
2,015,178	+		GFF1994	0.69	-1.3
2,015,178	+		GFF1994	0.69	-0.8
2,015,178	+		GFF1994	0.69	-0.1
2,015,178	+		GFF1994	0.69	-0.1
2,015,178	+		GFF1994	0.69	-1.3
2,015,183	+		GFF1994	0.73	-0.0
2,015,183	+		GFF1994	0.73	+0.1
2,015,186	-		GFF1994	0.75	-0.8
2,015,186	-		GFF1994	0.75	-0.5
2,015,186	-		GFF1994	0.75	-0.3
2,015,186	-		GFF1994	0.75	+1.5
2,015,191	-		GFF1994	0.79	-2.0
2,015,191	-		GFF1994	0.79	-1.2
2,015,199	-		GFF1994	0.86	+1.4
2,015,199	-		GFF1994	0.86	-0.9
2,015,212	+				-2.4
2,015,212	+				-0.7
2,015,219	-				-0.0
2,015,220	-				-1.3
2,015,229	+				+0.1
2,015,237	-				+0.1
2,015,250	+				-0.6
2,015,251	+				-0.1
2,015,251	+				+0.2
2,015,251	+				-1.1
2,015,251	+				+0.0
2,015,251	+				-1.3
2,015,251	+				+0.7
2,015,251	+				-0.3
2,015,251	+				-1.9
2,015,251	+				-1.6
2,015,251	+				-0.3
2,015,251	+				-1.0
2,015,251	+				-0.8
2,015,251	+				-1.0
2,015,251	+				+0.4
2,015,251	+				-1.6
2,015,251	+				+0.1
2,015,251	+				-1.0
2,015,251	+				+1.1
2,015,251	+				-1.6
2,015,251	+				-1.6
2,015,251	+				-1.8
2,015,251	+				-0.2
2,015,251	+				-0.1
2,015,253	+				-1.2
2,015,258	-				+0.9
2,015,259	-				+0.4
2,015,259	-				+0.9
2,015,259	-				+0.3
2,015,259	-				-2.4
2,015,259	-				+0.4
2,015,259	-				+0.5
2,015,259	-				+0.5
2,015,259	-				-0.4
2,015,259	-				+0.4
2,015,259	-				+1.9
2,015,259	-				-1.0
2,015,259	-				+0.1
2,015,259	-				+0.2
2,015,259	-				+0.3
2,015,259	-				+0.5
2,015,259	-				+1.1
2,015,259	-				-0.6
2,015,259	-				+0.3
2,015,259	-				-0.3
2,015,259	-				-0.4
2,015,308	+				-1.2
2,015,308	+				-0.6
2,015,308	+				-0.9
2,015,308	+				+0.8
2,015,308	+				-1.3
2,015,308	+				+0.4
2,015,308	+				+0.2
2,015,308	+				+0.4
2,015,316	-				+0.4
2,015,316	-				+0.4
2,015,316	-				-0.3
2,015,316	-				-2.4
2,015,316	-				-2.4
2,015,316	-				-1.1
2,015,318	+				-0.6
2,015,319	+				-2.0
2,015,342	+				+0.3
2,015,354	+				-1.1
2,015,373	-				-0.7
2,015,383	+				-0.1
2,015,383	+				-1.2
2,015,391	-				-0.2
2,015,391	-				-0.4
2,015,414	+				-0.7
2,015,432	-				-0.9
2,015,443	-				-0.1
2,015,458	+				+0.2
2,015,468	-				-0.4
2,015,478	-				-0.2
2,015,484	+				-0.1
2,015,503	+				+0.2
2,015,513	-				-0.3
2,015,516	-		GFF1995	0.10	+1.2
2,015,516	-		GFF1995	0.10	+0.6
2,015,529	+		GFF1995	0.11	-0.8
2,015,529	+		GFF1995	0.11	-0.1
2,015,530	-		GFF1995	0.11	-1.9
2,015,534	+		GFF1995	0.11	-0.9
2,015,534	+		GFF1995	0.11	+0.7
2,015,534	+		GFF1995	0.11	+0.1
2,015,534	+		GFF1995	0.11	+1.2
2,015,534	+		GFF1995	0.11	-1.0
2,015,534	+		GFF1995	0.11	-0.0
2,015,539	+		GFF1995	0.12	-1.5
2,015,539	+		GFF1995	0.12	+0.4
2,015,539	+		GFF1995	0.12	-0.6
2,015,539	+		GFF1995	0.12	-1.6
2,015,539	+		GFF1995	0.12	-0.1
2,015,539	+		GFF1995	0.12	+1.0
2,015,539	+		GFF1995	0.12	-0.2
2,015,542	-		GFF1995	0.12	+1.0
2,015,542	-		GFF1995	0.12	-0.2
2,015,542	-		GFF1995	0.12	-0.1
2,015,547	-		GFF1995	0.12	-0.8
2,015,547	-		GFF1995	0.12	+0.4
2,015,547	-		GFF1995	0.12	-0.3
2,015,547	-		GFF1995	0.12	+0.3
2,015,548	+		GFF1995	0.12	-0.0
2,015,548	+		GFF1995	0.12	+0.2
2,015,556	-		GFF1995	0.13	-1.0
2,015,569	+		GFF1995	0.14	-1.0
2,015,592	+		GFF1995	0.15	+0.8
2,015,594	+		GFF1995	0.16	+0.1
2,015,594	+		GFF1995	0.16	-1.9
2,015,594	+		GFF1995	0.16	-0.1
2,015,595	-		GFF1995	0.16	-0.7
2,015,602	-		GFF1995	0.16	-0.7
2,015,606	+		GFF1995	0.16	+0.4
2,015,606	+		GFF1995	0.16	+0.9
2,015,614	+		GFF1995	0.17	-0.3
2,015,614	-		GFF1995	0.17	+0.4
2,015,635	+		GFF1995	0.18	+1.3
2,015,635	+		GFF1995	0.18	-0.5
2,015,635	+		GFF1995	0.18	-1.2
2,015,635	+		GFF1995	0.18	-0.2
2,015,635	+		GFF1995	0.18	-0.8
2,015,643	-		GFF1995	0.19	+1.2
2,015,643	-		GFF1995	0.19	+0.3
2,015,643	-		GFF1995	0.19	-2.9
2,015,643	-		GFF1995	0.19	-0.6
2,015,643	-		GFF1995	0.19	-0.5
2,015,643	-		GFF1995	0.19	+0.2
2,015,661	-		GFF1995	0.20	+0.2
2,015,702	-		GFF1995	0.23	+0.2
2,015,702	-		GFF1995	0.23	-0.5
2,015,708	+		GFF1995	0.23	+0.8
2,015,708	+		GFF1995	0.23	+0.4
2,015,708	+		GFF1995	0.23	-1.5
2,015,708	+		GFF1995	0.23	-2.2
2,015,716	-		GFF1995	0.24	+0.3
2,015,716	-		GFF1995	0.24	-0.4
2,015,726	-		GFF1995	0.25	-0.0
2,015,730	+		GFF1995	0.25	-1.1
2,015,743	+		GFF1995	0.26	+0.7
2,015,745	+		GFF1995	0.26	-1.4
2,015,795	-		GFF1995	0.30	+1.2
2,015,795	-		GFF1995	0.30	-1.0
2,015,797	+		GFF1995	0.30	+0.7
2,015,797	+		GFF1995	0.30	-0.7
2,015,805	+		GFF1995	0.30	-0.3
2,015,835	+		GFF1995	0.32	+0.6
2,015,835	+		GFF1995	0.32	-0.1
2,015,835	+		GFF1995	0.32	-0.0
2,015,835	+		GFF1995	0.32	+1.1
2,015,835	+		GFF1995	0.32	-0.9
2,015,835	+		GFF1995	0.32	+1.3
2,015,835	-		GFF1995	0.32	-0.5
2,015,838	-		GFF1995	0.32	-1.9
2,015,838	-		GFF1995	0.32	+0.3
2,015,840	+		GFF1995	0.33	+0.1
2,015,843	-		GFF1995	0.33	-0.3
2,015,843	-		GFF1995	0.33	+0.6
2,015,845	+		GFF1995	0.33	-1.6
2,015,845	+		GFF1995	0.33	-0.5
2,015,845	+		GFF1995	0.33	-0.3
2,015,845	+		GFF1995	0.33	-2.6
2,015,845	+		GFF1995	0.33	-0.9
2,015,845	+		GFF1995	0.33	+0.4
2,015,853	-		GFF1995	0.34	-1.6
2,015,853	-		GFF1995	0.34	-0.5
2,015,853	-		GFF1995	0.34	-0.4
2,015,867	-		GFF1995	0.35	-0.1
2,015,882	+		GFF1995	0.36	+0.4
2,015,899	+		GFF1995	0.37	-0.1
2,015,914	+		GFF1995	0.38	-0.5
2,016,014	+		GFF1995	0.45	+0.3
2,016,014	+		GFF1995	0.45	-0.1
2,016,051	-		GFF1995	0.47	-0.5