Strain Fitness in Sphingobium sp. HT1-2 around GFF1892

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,915,533	-		GFF1891	0.14	-2.2
1,915,540	-		GFF1891	0.15	-2.0
1,915,576	+		GFF1891	0.18	-3.2
1,915,584	+		GFF1891	0.19	-3.0
1,915,586	+		GFF1891	0.19	-3.0
1,915,594	-		GFF1891	0.20	-4.1
1,915,594	-		GFF1891	0.20	-2.4
1,915,605	+		GFF1891	0.21	+0.1
1,915,757	+		GFF1891	0.34	-2.1
1,915,814	-		GFF1891	0.39	-2.7
1,915,902	-		GFF1891	0.47	-2.6
1,915,904	-		GFF1891	0.47	-2.0
1,915,904	-		GFF1891	0.47	-2.3
1,915,912	-		GFF1891	0.48	-2.8
1,915,914	-		GFF1891	0.48	-1.7
1,915,914	-		GFF1891	0.48	-0.6
1,915,921	+		GFF1891	0.49	-1.1
1,915,922	+		GFF1891	0.49	-1.3
1,915,930	-		GFF1891	0.49	-2.2
1,915,930	-		GFF1891	0.49	-0.7
1,915,937	+		GFF1891	0.50	-2.7
1,915,938	-		GFF1891	0.50	-3.0
1,915,962	-		GFF1891	0.52	-1.3
1,915,964	-		GFF1891	0.52	-3.4
1,915,969	+		GFF1891	0.53	-3.4
1,915,972	+		GFF1891	0.53	-1.8
1,915,972	+		GFF1891	0.53	-3.0
1,915,980	-		GFF1891	0.54	-3.3
1,915,980	-		GFF1891	0.54	-1.3
1,915,980	-		GFF1891	0.54	-2.0
1,915,980	-		GFF1891	0.54	+0.4
1,916,006	+		GFF1891	0.56	-2.6
1,916,014	-		GFF1891	0.57	-2.8
1,916,022	+		GFF1891	0.57	-0.1
1,916,030	-		GFF1891	0.58	-0.9
1,916,030	-		GFF1891	0.58	-3.1
1,916,034	+		GFF1891	0.58	-2.7
1,916,034	+		GFF1891	0.58	-2.3
1,916,057	-		GFF1891	0.60	-0.4
1,916,065	-		GFF1891	0.61	-2.4
1,916,067	+		GFF1891	0.61	-0.9
1,916,075	-		GFF1891	0.62	+1.1
1,916,117	+		GFF1891	0.66	-1.1
1,916,198	+		GFF1891	0.73	-0.4
1,916,262	+		GFF1891	0.79	-2.0
1,916,267	+		GFF1891	0.79	-2.1
1,916,267	+		GFF1891	0.79	-0.2
1,916,267	+		GFF1891	0.79	-1.5
1,916,274	+		GFF1891	0.80	-0.6
1,916,281	+		GFF1891	0.80	-0.9
1,916,281	-		GFF1891	0.80	-1.3
1,916,281	-		GFF1891	0.80	-1.9
1,916,293	-		GFF1891	0.81	-3.6
1,916,306	+		GFF1891	0.82	-3.8
1,916,306	+		GFF1891	0.82	-2.8
1,916,306	+		GFF1891	0.82	-2.9
1,916,306	+		GFF1891	0.82	-2.0
1,916,314	-		GFF1891	0.83	-3.7
1,916,314	-		GFF1891	0.83	-1.5
1,916,314	-		GFF1891	0.83	+0.4
1,916,314	-		GFF1891	0.83	-1.4
1,916,314	-		GFF1891	0.83	-1.9
1,916,314	-		GFF1891	0.83	-1.6
1,916,314	-		GFF1891	0.83	-2.0
1,916,314	-		GFF1891	0.83	-2.0
1,916,314	-		GFF1891	0.83	-1.1
1,916,316	+		GFF1891	0.83	-1.6
1,916,322	-		GFF1891	0.84	-2.1
1,916,358	+		GFF1891	0.87	-1.3
1,916,371	+		GFF1891	0.88	-1.5
1,916,371	+		GFF1891	0.88	-1.9
1,916,379	-		GFF1891	0.89	-2.0
1,916,379	-		GFF1891	0.89	-1.9
1,916,379	-		GFF1891	0.89	-0.5
1,916,385	+		GFF1891	0.89	-2.4
1,916,385	+		GFF1891	0.89	-0.3
1,916,435	+				-1.5
1,916,437	+				+0.4
1,916,437	+				-1.0
1,916,437	+				-1.5
1,916,443	-				-1.6
1,916,445	-				-1.9
1,916,459	+				-0.1
1,916,459	+				-3.5
1,916,459	+				-1.0
1,916,459	+				-1.0
1,916,467	-				+0.1
1,916,467	-				-2.0
1,916,467	-				-1.3
1,916,469	+				-3.6
1,916,477	-				-2.7
1,916,487	-				-1.7
1,916,498	+				+0.3
1,916,506	-				+0.0
1,916,506	-				-0.2
1,916,506	-				-0.1
1,916,511	-				-0.1
1,916,516	-				+0.8
1,916,534	-				+1.5
1,916,563	+				-1.3
1,916,587	+				-2.3
1,916,594	+				-1.8
1,916,619	+		GFF1892	0.10	+0.6
1,916,619	+		GFF1892	0.10	-0.5
1,916,624	+		GFF1892	0.11	-0.3
1,916,634	+		GFF1892	0.12	-1.5
1,916,749	+		GFF1892	0.25	-0.3
1,916,779	-		GFF1892	0.28	+0.9
1,916,786	+		GFF1892	0.29	+0.3
1,916,786	+		GFF1892	0.29	+0.4
1,916,786	+		GFF1892	0.29	+0.2
1,916,794	-		GFF1892	0.30	-1.0
1,916,794	-		GFF1892	0.30	+1.1
1,916,794	-		GFF1892	0.30	-1.6
1,916,823	+		GFF1892	0.33	+0.5
1,916,831	-		GFF1892	0.34	+0.3
1,916,865	+		GFF1892	0.37	-1.3
1,916,865	+		GFF1892	0.37	+0.1
1,916,868	-		GFF1892	0.38	+1.0
1,916,873	-		GFF1892	0.38	-0.5
1,916,873	-		GFF1892	0.38	+1.1
1,916,883	-		GFF1892	0.39	+1.1
1,916,889	+		GFF1892	0.40	-0.1
1,916,901	+		GFF1892	0.41	+2.7
1,916,906	+		GFF1892	0.42	+0.4
1,916,922	-		GFF1892	0.44	+0.5
1,916,961	-		GFF1892	0.48	+0.1
1,916,971	+		GFF1892	0.49	+2.1
1,916,980	-		GFF1892	0.50	-0.1
1,916,981	+		GFF1892	0.50	+1.3
1,916,989	-		GFF1892	0.51	-0.6
1,917,003	+		GFF1892	0.53	-0.0
1,917,009	-		GFF1892	0.54	-1.9
1,917,015	-		GFF1892	0.54	+2.0
1,917,038	+		GFF1892	0.57	+0.9
1,917,068	+		GFF1892	0.60	+0.3
1,917,076	-		GFF1892	0.61	+0.2
1,917,117	-		GFF1892	0.66	+0.5
1,917,190	-		GFF1892	0.74	+0.6
1,917,192	+		GFF1892	0.74	+1.3
1,917,192	+		GFF1892	0.74	-0.7
1,917,192	+		GFF1892	0.74	-0.5
1,917,199	+		GFF1892	0.75	+1.4
1,917,200	-		GFF1892	0.75	-0.1
1,917,278	-		GFF1892	0.84	-0.9
1,917,285	-		GFF1892	0.84	-0.1
1,917,347	+				-0.4
1,917,347	+				-0.2
1,917,347	+				+0.9
1,917,347	+				-0.0
1,917,347	+				-1.1
1,917,347	+				+0.3
1,917,347	+				-2.1
1,917,347	+				+1.2
1,917,347	+				+0.7
1,917,347	+				+1.1
1,917,352	+				-0.8
1,917,355	-				-0.3
1,917,355	-				-0.1
1,917,380	+				+0.4
1,917,380	+				+0.4
1,917,421	-				+0.6
1,917,443	-				-0.3
1,917,494	+				-1.5
1,917,525	+		GFF1893	0.19	+1.2
1,917,551	-		GFF1893	0.27	-2.1
1,917,551	-		GFF1893	0.27	-1.2
1,917,586	+		GFF1893	0.39	+0.7
1,917,602	-		GFF1893	0.44	+0.5
1,917,607	-		GFF1893	0.46	-0.7
1,917,672	-		GFF1893	0.67	-0.4
1,917,689	+		GFF1893	0.73	+0.7
1,917,689	+		GFF1893	0.73	+0.9
1,917,689	+		GFF1893	0.73	-0.4
1,917,689	+		GFF1893	0.73	-0.9
1,917,689	+		GFF1893	0.73	-0.5
1,917,689	+		GFF1893	0.73	+0.6
1,917,689	+		GFF1893	0.73	+1.0
1,917,689	+		GFF1893	0.73	-0.5
1,917,689	+		GFF1893	0.73	-0.4
1,917,689	+		GFF1893	0.73	+0.1
1,917,689	+		GFF1893	0.73	-0.5
1,917,689	+		GFF1893	0.73	+0.6
1,917,689	+		GFF1893	0.73	-1.9
1,917,689	+		GFF1893	0.73	+0.3
1,917,697	-		GFF1893	0.75	-0.2
1,917,697	-		GFF1893	0.75	-0.1
1,917,697	-		GFF1893	0.75	-2.5
1,917,697	-		GFF1893	0.75	+1.3
1,917,697	-		GFF1893	0.75	-0.6
1,917,697	-		GFF1893	0.75	+0.4
1,917,697	-		GFF1893	0.75	-1.4
1,917,697	-		GFF1893	0.75	+2.8
1,917,697	-		GFF1893	0.75	-1.6
1,917,708	+		GFF1893	0.79	-0.2
1,917,708	+		GFF1893	0.79	+0.9
1,917,708	+		GFF1893	0.79	+0.6
1,917,708	+		GFF1893	0.79	+1.2
1,917,708	+		GFF1893	0.79	+0.6
1,917,713	+		GFF1893	0.80	-1.0
1,917,716	-		GFF1893	0.81	+1.2
1,917,716	-		GFF1893	0.81	-0.6
1,917,716	-		GFF1893	0.81	-0.6
1,917,716	-		GFF1893	0.81	+0.0
1,917,728	+		GFF1893	0.85	+0.9
1,917,728	+		GFF1893	0.85	-1.0
1,917,731	-		GFF1893	0.86	+1.7
1,917,736	-		GFF1893	0.88	+1.4
1,917,749	+				+0.8
1,917,883	-				+0.4
1,917,883	-				+0.3
1,917,883	-				+0.6
1,917,885	+				+0.5
1,917,906	+				-0.9
1,917,906	+				-0.5
1,917,906	+				+0.1
1,917,946	-				-0.1
1,917,982	+		GFF1894	0.16	-0.6
1,917,990	-		GFF1894	0.18	+0.4
1,918,051	-		GFF1894	0.30	+0.4
1,918,070	+		GFF1894	0.33	+1.4
1,918,070	+		GFF1894	0.33	+0.4
1,918,085	+		GFF1894	0.36	+0.5
1,918,090	+		GFF1894	0.37	+1.1
1,918,120	+		GFF1894	0.43	-1.5
1,918,147	+		GFF1894	0.48	-0.5
1,918,175	+		GFF1894	0.53	-1.3
1,918,223	+		GFF1894	0.62	+1.9
1,918,231	-		GFF1894	0.64	+1.2
1,918,236	+		GFF1894	0.65	-0.2
1,918,236	+		GFF1894	0.65	+1.0
1,918,239	-		GFF1894	0.65	+2.4
1,918,284	+		GFF1894	0.74	+0.6