Strain Fitness in Sphingobium sp. HT1-2 around GFF1790

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,811,284	+		GFF1789	0.45	-1.1
1,811,284	+		GFF1789	0.45	+0.2
1,811,284	-		GFF1789	0.45	+0.6
1,811,292	-		GFF1789	0.46	+0.2
1,811,292	-		GFF1789	0.46	+0.6
1,811,292	-		GFF1789	0.46	+0.4
1,811,292	-		GFF1789	0.46	+0.3
1,811,292	-		GFF1789	0.46	-0.8
1,811,292	-		GFF1789	0.46	+1.2
1,811,294	-		GFF1789	0.46	+1.4
1,811,294	-		GFF1789	0.46	+0.7
1,811,341	+		GFF1789	0.54	-0.3
1,811,341	+		GFF1789	0.54	+0.2
1,811,341	+		GFF1789	0.54	+0.6
1,811,341	+		GFF1789	0.54	-0.3
1,811,341	+		GFF1789	0.54	-2.8
1,811,341	+		GFF1789	0.54	-0.4
1,811,349	-		GFF1789	0.55	-1.1
1,811,349	-		GFF1789	0.55	-0.4
1,811,349	-		GFF1789	0.55	+0.4
1,811,349	-		GFF1789	0.55	-0.1
1,811,349	-		GFF1789	0.55	-0.8
1,811,349	-		GFF1789	0.55	-0.1
1,811,349	-		GFF1789	0.55	+0.9
1,811,351	+		GFF1789	0.55	+0.5
1,811,362	+		GFF1789	0.57	-0.5
1,811,370	-		GFF1789	0.58	+1.2
1,811,384	+		GFF1789	0.61	+0.1
1,811,388	-		GFF1789	0.61	-0.4
1,811,388	-		GFF1789	0.61	-0.0
1,811,411	-		GFF1789	0.65	-0.3
1,811,424	+		GFF1789	0.67	+0.2
1,811,438	+		GFF1789	0.69	-2.0
1,811,503	-		GFF1789	0.79	-1.6
1,811,504	+		GFF1789	0.79	+0.5
1,811,504	+		GFF1789	0.79	+1.8
1,811,508	-		GFF1789	0.80	-0.6
1,811,548	-		GFF1789	0.86	+0.0
1,811,557	+		GFF1789	0.88	-2.1
1,811,557	+		GFF1789	0.88	+0.5
1,811,557	+		GFF1789	0.88	-0.1
1,811,557	+		GFF1789	0.88	+0.4
1,811,560	-		GFF1789	0.88	-0.3
1,811,560	-		GFF1789	0.88	+0.2
1,811,565	-		GFF1789	0.89	-1.3
1,811,565	-		GFF1789	0.89	+0.3
1,811,565	-		GFF1789	0.89	+0.2
1,811,565	-		GFF1789	0.89	+0.2
1,811,565	-		GFF1789	0.89	-1.0
1,811,577	-				+0.4
1,811,577	-				-1.5
1,811,616	-				-1.3
1,811,622	+				+0.2
1,811,662	+				-1.6
1,811,662	+				-0.2
1,811,662	+				-0.5
1,811,662	+				-2.2
1,811,670	-				-0.2
1,811,675	-				+0.7
1,811,693	-				-0.6
1,811,709	+				-0.5
1,811,717	-				-0.0
1,811,749	+				-0.0
1,811,750	+				+0.7
1,811,753	-				-1.4
1,811,758	-				-0.5
1,811,775	+				-1.1
1,811,783	-				-0.5
1,811,791	-				+0.9
1,811,793	-				-1.7
1,811,821	-				-0.1
1,811,826	-				-0.4
1,811,826	-				-0.3
1,811,832	+				+1.2
1,811,850	-				+0.6
1,811,877	-				-0.1
1,811,877	-				-0.0
1,811,884	+				-0.6
1,811,885	+				+0.4
1,811,925	-				-0.0
1,811,939	-				-2.3
1,811,949	-				-0.5
1,811,949	-				-1.1
1,811,969	+				-0.9
1,811,972	-				-2.3
1,811,976	+				+0.8
1,811,981	+				+1.5
1,811,981	+				-0.5
1,811,981	+				+0.7
1,811,981	+				+0.7
1,811,981	+				-1.1
1,811,981	+				-0.9
1,811,981	+				-0.6
1,811,981	+				-1.7
1,811,989	-				-0.0
1,811,989	-				+0.5
1,811,989	-				+0.5
1,811,989	-				-2.1
1,811,989	-				-0.9
1,811,989	-				-2.1
1,811,989	-				-0.1
1,812,001	-				-0.0
1,812,001	-				-0.2
1,812,005	-				-1.4
1,812,077	+				-0.5
1,812,077	+				-1.7
1,812,079	+				-1.8
1,812,085	+				+0.4
1,812,090	+				+0.9
1,812,097	+				-1.8
1,812,097	+				+0.2
1,812,097	+				-1.1
1,812,097	+				-1.4
1,812,123	-				-0.3
1,812,132	+				-0.6
1,812,160	+				-1.1
1,812,165	+				-1.5
1,812,173	-				-0.8
1,812,173	-				+0.2
1,812,201	+				+0.5
1,812,201	+				+0.3
1,812,209	-				-0.1
1,812,209	-				-0.9
1,812,213	+				-0.1
1,812,222	+				+0.1
1,812,229	+				+0.7
1,812,235	-				+0.7
1,812,243	+				-0.8
1,812,280	+				-1.1
1,812,286	-				-0.2
1,812,288	-				-1.0
1,812,289	+				-0.1
1,812,289	+				-0.3
1,812,289	+				-0.5
1,812,289	+				-0.1
1,812,289	+				-1.8
1,812,289	+				-0.0
1,812,289	+				-0.7
1,812,297	-				+0.6
1,812,297	-				-1.5
1,812,326	-				-1.1
1,812,335	+				+0.5
1,812,335	+				+0.4
1,812,337	+				-0.0
1,812,337	+				-1.3
1,812,337	+				+0.3
1,812,337	+				+0.2
1,812,337	+				-0.7
1,812,337	+				+0.2
1,812,337	+				-1.0
1,812,337	+				-2.7
1,812,337	+				+0.4
1,812,337	+				-1.2
1,812,337	+				+0.6
1,812,337	+				-0.5
1,812,345	-				+0.2
1,812,345	-				+1.4
1,812,345	-				-1.5
1,812,345	-				+0.2
1,812,345	-				-0.1
1,812,345	-				-1.0
1,812,345	-				-2.1
1,812,345	-				-1.1
1,812,345	-				+1.4
1,812,345	-				-1.1
1,812,345	-				+0.0
1,812,345	-				-0.2
1,812,345	-				-2.0
1,812,345	-				+0.6
1,812,345	-				-1.1
1,812,345	-				-1.1
1,812,345	-				+1.0
1,812,347	+				-0.1
1,812,350	-				+1.9
1,812,358	-				-1.1
1,812,372	+				+0.3
1,812,372	+				+1.0
1,812,372	+				-2.5
1,812,372	+				-0.5
1,812,380	-				-1.1
1,812,380	-				+0.1
1,812,380	-				-0.6
1,812,380	-				+0.1
1,812,391	+				+0.5
1,812,394	+				-1.0
1,812,402	-				+1.0
1,812,406	+				+0.9
1,812,411	+				-0.9
1,812,414	-		GFF1790	0.10	-0.8
1,812,429	+		GFF1790	0.11	-0.6
1,812,436	+		GFF1790	0.12	+0.3
1,812,460	+		GFF1790	0.14	-0.9
1,812,460	+		GFF1790	0.14	+0.2
1,812,460	+		GFF1790	0.14	-0.4
1,812,460	+		GFF1790	0.14	-2.3
1,812,460	+		GFF1790	0.14	+0.4
1,812,460	+		GFF1790	0.14	+0.1
1,812,460	+		GFF1790	0.14	+0.3
1,812,460	+		GFF1790	0.14	-0.2
1,812,460	+		GFF1790	0.14	-0.1
1,812,460	+		GFF1790	0.14	-1.0
1,812,460	+		GFF1790	0.14	+1.7
1,812,460	+		GFF1790	0.14	-1.3
1,812,460	+		GFF1790	0.14	-2.1
1,812,460	+		GFF1790	0.14	-0.3
1,812,460	+		GFF1790	0.14	-0.5
1,812,460	+		GFF1790	0.14	-0.4
1,812,460	+		GFF1790	0.14	-0.9
1,812,463	-		GFF1790	0.14	+0.1
1,812,468	-		GFF1790	0.14	+0.6
1,812,468	-		GFF1790	0.14	+1.8
1,812,468	-		GFF1790	0.14	-0.2
1,812,468	-		GFF1790	0.14	+1.3
1,812,468	-		GFF1790	0.14	+0.9
1,812,468	-		GFF1790	0.14	+0.9
1,812,468	-		GFF1790	0.14	-1.9
1,812,468	-		GFF1790	0.14	+0.3
1,812,468	-		GFF1790	0.14	-0.1
1,812,468	-		GFF1790	0.14	-0.7
1,812,496	+		GFF1790	0.16	-0.4
1,812,496	+		GFF1790	0.16	-0.3
1,812,496	+		GFF1790	0.16	-1.6
1,812,496	+		GFF1790	0.16	-3.3
1,812,496	+		GFF1790	0.16	+0.4
1,812,504	-		GFF1790	0.17	-0.5
1,812,504	-		GFF1790	0.17	-0.6
1,812,504	-		GFF1790	0.17	+0.6
1,812,504	-		GFF1790	0.17	-1.5
1,812,504	-		GFF1790	0.17	+0.4
1,812,510	+		GFF1790	0.17	-0.0
1,812,510	+		GFF1790	0.17	-0.5
1,812,510	+		GFF1790	0.17	+1.6
1,812,510	+		GFF1790	0.17	+0.9
1,812,510	+		GFF1790	0.17	+0.5
1,812,518	-		GFF1790	0.18	+2.2
1,812,518	-		GFF1790	0.18	-1.4
1,812,519	-		GFF1790	0.18	-1.3
1,812,519	-		GFF1790	0.18	+1.1
1,812,537	+		GFF1790	0.19	-0.4
1,812,537	+		GFF1790	0.19	-0.1
1,812,545	-		GFF1790	0.20	-2.1
1,812,545	-		GFF1790	0.20	+0.6
1,812,564	-		GFF1790	0.22	+0.1
1,812,592	+		GFF1790	0.24	-0.7
1,812,592	+		GFF1790	0.24	-0.3
1,812,610	+		GFF1790	0.25	+1.4
1,812,615	+		GFF1790	0.25	-0.5
1,812,615	+		GFF1790	0.25	-0.7
1,812,615	+		GFF1790	0.25	+1.3
1,812,623	-		GFF1790	0.26	-1.8
1,812,623	-		GFF1790	0.26	-0.7
1,812,623	-		GFF1790	0.26	-0.5
1,812,623	-		GFF1790	0.26	-0.8
1,812,623	-		GFF1790	0.26	+1.3
1,812,642	+		GFF1790	0.28	+0.6
1,812,648	+		GFF1790	0.28	+0.7
1,812,648	+		GFF1790	0.28	-0.5
1,812,648	+		GFF1790	0.28	-0.8
1,812,656	-		GFF1790	0.29	+0.1
1,812,663	+		GFF1790	0.29	-0.9
1,812,722	+		GFF1790	0.34	+0.2
1,812,786	-		GFF1790	0.39	-0.6
1,812,805	-		GFF1790	0.40	-0.6
1,812,819	-		GFF1790	0.41	+0.3
1,812,819	-		GFF1790	0.41	-0.2
1,812,825	-		GFF1790	0.42	+0.2
1,812,834	+		GFF1790	0.42	+0.3
1,812,834	+		GFF1790	0.42	-0.6
1,812,842	-		GFF1790	0.43	-0.5
1,812,842	-		GFF1790	0.43	-2.6
1,812,842	-		GFF1790	0.43	-1.9
1,812,847	+		GFF1790	0.43	-1.6
1,812,855	-		GFF1790	0.44	-0.1
1,812,856	+		GFF1790	0.44	-0.9
1,812,864	+		GFF1790	0.44	+0.8
1,812,864	-		GFF1790	0.44	-0.5
1,812,881	-		GFF1790	0.46	+1.9
1,812,882	+		GFF1790	0.46	-1.5
1,812,904	+		GFF1790	0.48	+1.0
1,812,904	+		GFF1790	0.48	-1.8
1,812,904	+		GFF1790	0.48	+0.8
1,812,904	+		GFF1790	0.48	-2.0
1,812,904	+		GFF1790	0.48	-1.5
1,812,904	+		GFF1790	0.48	+0.4
1,812,904	+		GFF1790	0.48	+0.3
1,812,912	-		GFF1790	0.48	-2.1
1,812,912	-		GFF1790	0.48	-0.5
1,812,912	-		GFF1790	0.48	-0.6
1,812,912	-		GFF1790	0.48	-0.1
1,812,912	-		GFF1790	0.48	+0.8
1,812,912	-		GFF1790	0.48	-0.1
1,812,912	-		GFF1790	0.48	+0.8
1,812,912	-		GFF1790	0.48	+0.2
1,812,920	+		GFF1790	0.49	-1.6
1,812,949	+		GFF1790	0.51	-0.6
1,812,955	-		GFF1790	0.51	-0.6
1,812,962	-		GFF1790	0.52	-0.9
1,812,988	-		GFF1790	0.54	-1.5
1,813,008	-		GFF1790	0.56	-0.3
1,813,008	-		GFF1790	0.56	+0.0
1,813,012	+		GFF1790	0.56	+0.3
1,813,028	-		GFF1790	0.57	-1.8
1,813,040	-		GFF1790	0.58	-2.3
1,813,042	+		GFF1790	0.58	+0.2
1,813,042	+		GFF1790	0.58	+0.1
1,813,061	+		GFF1790	0.60	+0.4
1,813,061	+		GFF1790	0.60	-1.1
1,813,069	-		GFF1790	0.60	+1.5
1,813,069	-		GFF1790	0.60	-0.6
1,813,069	-		GFF1790	0.60	-3.0
1,813,071	-		GFF1790	0.60	-0.4
1,813,090	+		GFF1790	0.62	-2.7
1,813,095	+		GFF1790	0.62	-0.0
1,813,095	+		GFF1790	0.62	+0.9
1,813,095	+		GFF1790	0.62	+1.3
1,813,103	-		GFF1790	0.63	+0.1
1,813,103	-		GFF1790	0.63	-2.3
1,813,103	-		GFF1790	0.63	-0.1
1,813,104	-		GFF1790	0.63	-0.7
1,813,138	+		GFF1790	0.65	+1.0
1,813,150	-		GFF1790	0.66	+0.0
1,813,151	-		GFF1790	0.66	-0.1
1,813,157	-		GFF1790	0.67	-0.0
1,813,171	+		GFF1790	0.68	+0.3
1,813,210	+		GFF1790	0.71	-0.6
1,813,210	+		GFF1790	0.71	-0.4
1,813,210	+		GFF1790	0.71	+0.9
1,813,216	+		GFF1790	0.71	+1.1
1,813,216	+		GFF1790	0.71	-0.4
1,813,218	-		GFF1790	0.72	+0.2
1,813,218	-		GFF1790	0.72	-1.2
1,813,218	-		GFF1790	0.72	+0.7
1,813,224	-		GFF1790	0.72	-2.4
1,813,224	-		GFF1790	0.72	-0.2
1,813,229	-		GFF1790	0.72	-0.1
1,813,235	+		GFF1790	0.73	-1.3
1,813,235	+		GFF1790	0.73	+0.0
1,813,248	+		GFF1790	0.74	-1.1
1,813,251	-		GFF1790	0.74	-1.2
1,813,253	+		GFF1790	0.74	+0.7
1,813,256	+		GFF1790	0.74	+1.2
1,813,261	-		GFF1790	0.75	+0.4
1,813,261	-		GFF1790	0.75	-0.3
1,813,273	+		GFF1790	0.76	-0.3
1,813,273	+		GFF1790	0.76	-1.7
1,813,294	+		GFF1790	0.77	+0.3
1,813,301	+		GFF1790	0.78	+0.1
1,813,325	+		GFF1790	0.80	-1.6
1,813,325	+		GFF1790	0.80	+0.3
1,813,325	+		GFF1790	0.80	-1.1
1,813,328	-		GFF1790	0.80	-1.3
1,813,328	-		GFF1790	0.80	-0.0
1,813,328	-		GFF1790	0.80	-0.4
1,813,328	-		GFF1790	0.80	-0.2
1,813,330	+		GFF1790	0.80	-0.6
1,813,330	+		GFF1790	0.80	-0.5
1,813,333	-		GFF1790	0.80	+0.1
1,813,333	-		GFF1790	0.80	-0.7
1,813,338	-		GFF1790	0.81	+0.7
1,813,338	-		GFF1790	0.81	-0.1
1,813,338	-		GFF1790	0.81	-2.1
1,813,343	-		GFF1790	0.81	+0.9
1,813,367	+		GFF1790	0.83	-0.0
1,813,375	-		GFF1790	0.84	+0.6
1,813,375	-		GFF1790	0.84	-0.8
1,813,390	+		GFF1790	0.85	+0.5
1,813,390	+		GFF1790	0.85	-0.8
1,813,421	+		GFF1790	0.87	-0.5
1,813,486	+				-0.1
1,813,491	+				-0.6
1,813,494	-				+0.0
1,813,494	-				-0.3
1,813,494	-				-1.7
1,813,494	-				-0.5
1,813,499	-				-1.6
1,813,538	+				-2.4
1,813,546	-				-0.3
1,813,551	-				+0.5
1,813,559	+				+0.7
1,813,584	+				-0.6
1,813,587	-				-0.0
1,813,591	+				-1.5
1,813,592	-				+0.5
1,813,599	+				+0.4
1,813,618	+				-0.7
1,813,648	+				-0.3
1,813,658	+				+0.1
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