Strain Fitness in Sphingobium sp. HT1-2 around GFF1737

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,762,976	-		GFF1736	0.17	+0.8
1,762,982	-		GFF1736	0.18	-0.7
1,762,982	-		GFF1736	0.18	+0.1
1,762,982	-		GFF1736	0.18	+1.0
1,763,022	-		GFF1736	0.23	-1.4
1,763,022	-		GFF1736	0.23	-0.3
1,763,080	+		GFF1736	0.29	-2.6
1,763,084	+		GFF1736	0.30	+1.2
1,763,092	-		GFF1736	0.31	-0.3
1,763,092	-		GFF1736	0.31	+1.2
1,763,141	+		GFF1736	0.36	-1.6
1,763,141	+		GFF1736	0.36	-0.7
1,763,144	+		GFF1736	0.37	+0.8
1,763,149	+		GFF1736	0.37	-0.1
1,763,178	+		GFF1736	0.41	+0.8
1,763,179	-		GFF1736	0.41	+0.0
1,763,182	+		GFF1736	0.41	-1.7
1,763,185	-		GFF1736	0.41	-0.1
1,763,187	+		GFF1736	0.42	-0.8
1,763,187	+		GFF1736	0.42	-0.6
1,763,187	+		GFF1736	0.42	+0.1
1,763,187	+		GFF1736	0.42	+0.2
1,763,187	+		GFF1736	0.42	-0.3
1,763,187	+		GFF1736	0.42	-1.4
1,763,190	-		GFF1736	0.42	+0.3
1,763,195	-		GFF1736	0.43	-1.3
1,763,195	-		GFF1736	0.43	-0.1
1,763,197	+		GFF1736	0.43	-1.5
1,763,214	+		GFF1736	0.45	-1.7
1,763,259	+		GFF1736	0.50	+0.3
1,763,259	+		GFF1736	0.50	-1.0
1,763,259	+		GFF1736	0.50	-1.8
1,763,259	+		GFF1736	0.50	-0.7
1,763,267	-		GFF1736	0.51	-2.0
1,763,267	-		GFF1736	0.51	-1.1
1,763,267	-		GFF1736	0.51	+0.4
1,763,267	-		GFF1736	0.51	+0.2
1,763,286	+		GFF1736	0.53	+0.2
1,763,294	-		GFF1736	0.54	-0.4
1,763,309	-		GFF1736	0.56	-1.1
1,763,314	-		GFF1736	0.56	+0.4
1,763,323	+		GFF1736	0.57	+0.2
1,763,372	+		GFF1736	0.63	+0.6
1,763,372	+		GFF1736	0.63	-2.1
1,763,387	-		GFF1736	0.65	+0.7
1,763,388	+		GFF1736	0.65	-0.8
1,763,388	+		GFF1736	0.65	-0.3
1,763,399	-		GFF1736	0.66	-1.3
1,763,421	+		GFF1736	0.69	-1.0
1,763,421	+		GFF1736	0.69	-0.7
1,763,429	+		GFF1736	0.70	-1.1
1,763,429	-		GFF1736	0.70	+0.4
1,763,429	-		GFF1736	0.70	-0.1
1,763,442	-		GFF1736	0.71	-0.1
1,763,457	+		GFF1736	0.73	+0.5
1,763,457	+		GFF1736	0.73	-2.1
1,763,457	+		GFF1736	0.73	-0.7
1,763,457	+		GFF1736	0.73	-1.3
1,763,465	-		GFF1736	0.74	+0.8
1,763,465	-		GFF1736	0.74	-0.6
1,763,465	-		GFF1736	0.74	+0.7
1,763,465	-		GFF1736	0.74	+1.2
1,763,484	+		GFF1736	0.76	-0.8
1,763,489	-		GFF1736	0.76	-1.2
1,763,492	-		GFF1736	0.77	-0.3
1,763,497	-		GFF1736	0.77	-0.5
1,763,503	-		GFF1736	0.78	-0.3
1,763,505	+		GFF1736	0.78	+0.4
1,763,520	-		GFF1736	0.80	+0.2
1,763,547	+		GFF1736	0.83	+0.4
1,763,547	+		GFF1736	0.83	+1.7
1,763,555	-		GFF1736	0.84	-1.2
1,763,555	-		GFF1736	0.84	-1.3
1,763,555	-		GFF1736	0.84	-0.3
1,763,565	-		GFF1736	0.85	-1.3
1,763,570	-		GFF1736	0.86	+0.9
1,763,572	+		GFF1736	0.86	+1.3
1,763,580	-		GFF1736	0.87	-0.4
1,763,589	+		GFF1736	0.88	-1.0
1,763,599	+		GFF1736	0.89	+0.2
1,763,599	+		GFF1736	0.89	+1.3
1,763,601	+		GFF1736	0.89	-0.8
1,763,609	-				-0.4
1,763,630	-				-0.5
1,763,636	-				-0.4
1,763,642	-				+0.6
1,763,668	-				+0.7
1,763,682	-				+0.2
1,763,693	+				-1.7
1,763,693	+				-1.4
1,763,696	-				-0.8
1,763,696	-				-0.3
1,763,696	-				+0.3
1,763,696	-				+1.7
1,763,701	-				-0.3
1,763,701	-				+0.3
1,763,701	-				-0.3
1,763,705	-				-0.9
1,763,707	+				-0.2
1,763,729	+				+0.1
1,763,739	+				+0.8
1,763,739	+				-1.0
1,763,739	+				+0.6
1,763,739	+				-0.7
1,763,739	+				-2.2
1,763,739	+				+2.0
1,763,747	-				-1.3
1,763,747	-				+1.1
1,763,757	+				+0.9
1,763,776	+				-0.7
1,763,784	-				-1.3
1,763,784	-				+1.3
1,763,784	-				-1.0
1,763,784	-				-0.1
1,763,804	+				-1.4
1,763,806	-				-0.1
1,763,810	-				-0.7
1,763,838	+				-1.3
1,763,839	+				+0.5
1,763,841	+				+1.7
1,763,841	+				+1.3
1,763,857	+				-1.1
1,763,872	+				+1.4
1,763,893	+				-1.2
1,763,897	+				-0.1
1,763,897	+				-0.3
1,763,905	-				-1.3
1,763,905	-				+0.1
1,763,905	-				-0.1
1,763,905	-				+0.9
1,763,905	-				-0.6
1,763,916	+				+0.5
1,763,924	-				-0.4
1,763,927	+				+0.8
1,763,936	+				-2.4
1,763,953	+				-1.2
1,763,961	+				-1.7
1,763,961	+				+0.6
1,763,961	+				+0.3
1,763,961	+				+0.4
1,763,969	-				-1.7
1,763,969	-				-0.0
1,763,969	-				-0.9
1,763,969	-				-1.6
1,764,023	+				-0.5
1,764,042	-				-1.5
1,764,063	+		GFF1737	0.11	-1.5
1,764,069	+		GFF1737	0.12	-0.3
1,764,090	-		GFF1737	0.15	+1.0
1,764,106	+		GFF1737	0.17	+1.0
1,764,111	+		GFF1737	0.18	-1.6
1,764,111	+		GFF1737	0.18	-0.8
1,764,118	+		GFF1737	0.18	+0.7
1,764,122	+		GFF1737	0.19	+0.9
1,764,130	-		GFF1737	0.20	-1.4
1,764,130	-		GFF1737	0.20	+0.1
1,764,143	+		GFF1737	0.22	+0.1
1,764,143	+		GFF1737	0.22	-1.2
1,764,151	-		GFF1737	0.23	+1.1
1,764,151	-		GFF1737	0.23	-0.1
1,764,161	-		GFF1737	0.24	-1.5
1,764,161	-		GFF1737	0.24	-0.2
1,764,166	-		GFF1737	0.25	-0.4
1,764,221	-		GFF1737	0.32	-0.7
1,764,221	-		GFF1737	0.32	-1.0
1,764,237	+		GFF1737	0.34	-1.4
1,764,247	+		GFF1737	0.35	-1.7
1,764,289	+		GFF1737	0.40	-1.6
1,764,296	+		GFF1737	0.41	+0.5
1,764,297	-		GFF1737	0.41	-1.0
1,764,300	+		GFF1737	0.42	-1.1
1,764,302	-		GFF1737	0.42	+0.4
1,764,304	+		GFF1737	0.42	-0.1
1,764,306	+		GFF1737	0.43	-1.8
1,764,314	-		GFF1737	0.44	+0.0
1,764,316	+		GFF1737	0.44	-2.4
1,764,324	-		GFF1737	0.45	-1.6
1,764,332	+		GFF1737	0.46	+0.5
1,764,335	-		GFF1737	0.46	-0.5
1,764,340	-		GFF1737	0.47	-0.9
1,764,372	+		GFF1737	0.51	-0.3
1,764,372	+		GFF1737	0.51	-1.4
1,764,372	+		GFF1737	0.51	-0.4
1,764,372	+		GFF1737	0.51	+0.1
1,764,380	-		GFF1737	0.52	+0.3
1,764,380	-		GFF1737	0.52	-2.9
1,764,380	-		GFF1737	0.52	+1.2
1,764,402	+		GFF1737	0.55	-0.6
1,764,409	+		GFF1737	0.56	+0.4
1,764,410	-		GFF1737	0.56	+0.1
1,764,410	-		GFF1737	0.56	-1.8
1,764,410	-		GFF1737	0.56	-0.4
1,764,460	+		GFF1737	0.62	-0.8
1,764,460	+		GFF1737	0.62	-0.1
1,764,460	+		GFF1737	0.62	-1.7
1,764,496	+		GFF1737	0.67	-0.7
1,764,603	-		GFF1737	0.81	+0.4
1,764,603	-		GFF1737	0.81	+0.1
1,764,651	-		GFF1737	0.87	-0.5
1,764,672	+		GFF1737	0.90	-0.6
1,764,672	+		GFF1737	0.90	+0.1
1,764,680	-				-2.0
1,764,687	+				-0.9
1,764,697	-				-1.8
1,764,705	-				-0.6
1,764,716	+				+0.7
1,764,736	+				-0.1
1,764,736	+				+1.2
1,764,745	+				-0.2
1,764,746	-				-1.6
1,764,753	-				+0.1
1,764,789	-				-1.6
1,764,799	+				-1.0
1,764,829	+				-0.4
1,764,834	+				-2.3
1,764,837	-				-1.8
1,764,852	+		GFF1738	0.11	+0.1
1,764,853	+		GFF1738	0.11	+0.1
1,764,858	+		GFF1738	0.12	+0.1
1,764,863	+		GFF1738	0.13	-0.6
1,764,863	+		GFF1738	0.13	-1.8
1,764,863	+		GFF1738	0.13	-0.8
1,764,866	-		GFF1738	0.13	-0.2
1,764,871	-		GFF1738	0.14	-1.9
1,764,871	-		GFF1738	0.14	+0.3
1,764,871	-		GFF1738	0.14	-0.9
1,764,921	-		GFF1738	0.20	-0.4
1,764,939	-		GFF1738	0.22	+0.3
1,764,968	+		GFF1738	0.26	-0.3
1,764,968	+		GFF1738	0.26	+0.6
1,764,976	-		GFF1738	0.27	-0.8
1,764,987	-		GFF1738	0.28	-0.6
1,764,989	+		GFF1738	0.28	+0.2
1,764,997	-		GFF1738	0.29	+1.7
1,764,997	-		GFF1738	0.29	+0.7
1,764,997	-		GFF1738	0.29	-2.2
1,765,004	+		GFF1738	0.30	+0.6
1,765,012	-		GFF1738	0.31	+0.9
1,765,013	-		GFF1738	0.31	-0.6
1,765,015	+		GFF1738	0.31	-0.1
1,765,026	+		GFF1738	0.33	-0.7
1,765,047	+		GFF1738	0.35	-1.6
1,765,059	-		GFF1738	0.37	-0.2
1,765,106	+		GFF1738	0.43	-1.4
1,765,111	+		GFF1738	0.43	-0.4
1,765,111	+		GFF1738	0.43	-1.0
1,765,111	+		GFF1738	0.43	-1.7
1,765,114	-		GFF1738	0.44	-0.0
1,765,119	-		GFF1738	0.44	+0.2
1,765,119	-		GFF1738	0.44	+1.7
1,765,119	-		GFF1738	0.44	-0.1
1,765,148	-		GFF1738	0.48	-2.3
1,765,149	+		GFF1738	0.48	-0.7
1,765,157	+		GFF1738	0.49	-1.3
1,765,157	+		GFF1738	0.49	+1.0
1,765,157	+		GFF1738	0.49	-0.1
1,765,157	+		GFF1738	0.49	-1.3
1,765,165	-		GFF1738	0.50	-2.1
1,765,165	-		GFF1738	0.50	-0.1
1,765,165	-		GFF1738	0.50	+0.1
1,765,165	-		GFF1738	0.50	+0.3
1,765,178	-		GFF1738	0.52	+0.3
1,765,201	-		GFF1738	0.54	+0.8
1,765,203	+		GFF1738	0.55	-0.6
1,765,222	-		GFF1738	0.57	-0.5
1,765,223	-		GFF1738	0.57	-0.0
1,765,223	-		GFF1738	0.57	+0.7
1,765,230	+		GFF1738	0.58	-0.4
1,765,230	+		GFF1738	0.58	+0.3
1,765,233	-		GFF1738	0.58	+0.3
1,765,233	-		GFF1738	0.58	-0.2
1,765,237	+		GFF1738	0.59	+2.1
1,765,238	-		GFF1738	0.59	+1.5
1,765,238	-		GFF1738	0.59	-0.5
1,765,244	+		GFF1738	0.60	-0.4
1,765,244	-		GFF1738	0.60	-0.4
1,765,251	-		GFF1738	0.61	+0.4
1,765,280	+		GFF1738	0.64	+0.9
1,765,288	-		GFF1738	0.65	-0.6
1,765,302	+		GFF1738	0.67	-0.7
1,765,310	-		GFF1738	0.68	+0.6
1,765,310	-		GFF1738	0.68	-0.2
1,765,310	-		GFF1738	0.68	-0.4
1,765,310	-		GFF1738	0.68	-0.1
1,765,313	+		GFF1738	0.68	+0.6
1,765,328	-		GFF1738	0.70	+1.2
1,765,344	-		GFF1738	0.72	+1.4
1,765,365	-		GFF1738	0.75	-2.5
1,765,415	+		GFF1738	0.81	+0.2
1,765,416	+		GFF1738	0.81	+0.3
1,765,423	-		GFF1738	0.82	-0.0
1,765,423	-		GFF1738	0.82	+0.4
1,765,436	-		GFF1738	0.84	-1.1
1,765,467	-		GFF1738	0.87	+0.3
1,765,482	-		GFF1738	0.89	-1.3
1,765,542	+				-0.0
1,765,552	+				-1.9
1,765,554	+				+1.0
1,765,554	+				+0.7
1,765,554	+				-2.1
1,765,562	+				-2.1
1,765,562	-				+0.2
1,765,689	-				-1.8
1,765,691	+		GFF1739	0.10	+1.2
1,765,692	+		GFF1739	0.11	+0.9
1,765,698	-		GFF1739	0.14	-1.6
1,765,700	-		GFF1739	0.15	-1.4
1,765,700	-		GFF1739	0.15	-1.3
1,765,700	-		GFF1739	0.15	-0.6
1,765,700	-		GFF1739	0.15	+0.2