Strain Fitness in Sphingobium sp. HT1-2 around GFF1721

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,743,247	-		GFF1719	0.80	-0.5
1,743,279	+		GFF1719	0.81	-2.1
1,743,280	+		GFF1719	0.81	-0.8
1,743,280	+		GFF1719	0.81	+1.4
1,743,280	+		GFF1719	0.81	-0.3
1,743,288	-		GFF1719	0.81	-0.1
1,743,299	+		GFF1719	0.82	-0.1
1,743,328	+		GFF1719	0.83	-1.9
1,743,328	+		GFF1719	0.83	-0.0
1,743,333	+		GFF1719	0.83	-1.1
1,743,336	-		GFF1719	0.83	+0.1
1,743,336	-		GFF1719	0.83	-0.5
1,743,336	-		GFF1719	0.83	+0.4
1,743,343	+		GFF1719	0.84	+0.0
1,743,351	+		GFF1719	0.84	-1.5
1,743,351	+		GFF1719	0.84	-1.1
1,743,351	-		GFF1719	0.84	-0.1
1,743,356	-		GFF1719	0.84	-0.1
1,743,367	+		GFF1719	0.85	-0.8
1,743,378	-		GFF1719	0.85	-0.6
1,743,385	-		GFF1719	0.85	-0.4
1,743,405	+		GFF1719	0.86	-2.0
1,743,405	+		GFF1719	0.86	+0.8
1,743,413	-		GFF1719	0.86	-0.1
1,743,413	-		GFF1719	0.86	+0.6
1,743,413	-		GFF1719	0.86	+0.6
1,743,413	-		GFF1719	0.86	-1.3
1,743,414	+		GFF1719	0.86	-0.5
1,743,414	+		GFF1719	0.86	-0.3
1,743,414	+		GFF1719	0.86	-0.9
1,743,414	+		GFF1719	0.86	-0.1
1,743,422	-		GFF1719	0.87	-1.3
1,743,422	-		GFF1719	0.87	-0.5
1,743,453	-		GFF1719	0.88	+0.4
1,743,458	+		GFF1719	0.88	+0.1
1,743,466	-		GFF1719	0.88	-0.1
1,743,497	+		GFF1719	0.90	+0.3
1,743,497	-		GFF1719	0.90	-1.0
1,743,497	-		GFF1719	0.90	-0.5
1,743,501	+		GFF1719	0.90	-0.3
1,743,502	+		GFF1719	0.90	+1.0
1,743,502	+		GFF1719	0.90	-0.0
1,743,505	-		GFF1719	0.90	-1.9
1,743,509	+				-1.9
1,743,510	-				-0.7
1,743,510	-				+0.3
1,743,516	-				-0.3
1,743,523	-				-2.0
1,743,525	+				-0.7
1,743,533	-				-0.9
1,743,553	-				-2.7
1,743,553	-				-0.3
1,743,557	-				-0.2
1,743,563	-				-0.3
1,743,563	-				-1.8
1,743,570	+				-0.3
1,743,575	+				-0.2
1,743,578	-				+0.5
1,743,578	-				-1.5
1,743,583	-				-1.2
1,743,585	+				+0.7
1,743,585	+				-0.8
1,743,585	+				-0.4
1,743,585	+				-1.7
1,743,593	-				-0.4
1,743,593	-				-0.6
1,743,593	-				-0.6
1,743,593	-				-1.0
1,743,604	+				-0.6
1,743,604	+				+1.4
1,743,610	-				+1.1
1,743,611	+				-0.6
1,743,611	-				+0.6
1,743,611	-				-0.8
1,743,611	-				-1.6
1,743,613	+				+0.2
1,743,628	+				-0.1
1,743,633	+				-1.1
1,743,658	+				-1.5
1,743,666	-				-0.5
1,743,666	-				-0.2
1,743,667	-				-0.8
1,743,672	-				-0.7
1,743,684	-				+0.1
1,743,707	+				-0.7
1,743,707	+				+1.0
1,743,707	+				-0.3
1,743,707	+				+0.4
1,743,715	-				+0.1
1,743,720	+				-0.1
1,743,728	-				-0.6
1,743,736	-				-0.4
1,743,769	-				-0.9
1,743,792	+				+1.0
1,743,795	+				+0.2
1,743,798	-				-1.6
1,743,798	-				-1.0
1,743,798	-				-1.0
1,743,803	-				-0.4
1,743,826	+				+1.0
1,743,831	+				+0.4
1,743,839	-				+0.8
1,743,842	+		GFF1720	0.11	-0.1
1,743,869	-		GFF1720	0.18	-1.2
1,743,876	+		GFF1720	0.19	+0.5
1,743,884	-		GFF1720	0.21	-1.3
1,743,889	+		GFF1720	0.23	-0.5
1,743,906	-		GFF1720	0.27	+1.3
1,743,925	-		GFF1720	0.32	-0.9
1,743,950	-		GFF1720	0.38	+0.5
1,743,960	-		GFF1720	0.41	-0.7
1,743,977	-		GFF1720	0.45	+0.5
1,743,990	-		GFF1720	0.48	-0.7
1,743,997	+		GFF1720	0.50	-1.4
1,744,005	+		GFF1720	0.52	-0.6
1,744,005	+		GFF1720	0.52	+0.4
1,744,005	+		GFF1720	0.52	-0.1
1,744,005	+		GFF1720	0.52	-0.6
1,744,005	+		GFF1720	0.52	+0.3
1,744,005	+		GFF1720	0.52	-0.8
1,744,010	+		GFF1720	0.53	-0.1
1,744,013	-		GFF1720	0.54	-0.3
1,744,013	-		GFF1720	0.54	-1.3
1,744,013	-		GFF1720	0.54	+0.2
1,744,013	-		GFF1720	0.54	-0.1
1,744,013	-		GFF1720	0.54	-1.7
1,744,013	-		GFF1720	0.54	+1.4
1,744,013	-		GFF1720	0.54	-1.1
1,744,013	-		GFF1720	0.54	+0.3
1,744,013	-		GFF1720	0.54	+0.2
1,744,013	-		GFF1720	0.54	-0.6
1,744,013	-		GFF1720	0.54	-0.3
1,744,013	-		GFF1720	0.54	-1.9
1,744,013	-		GFF1720	0.54	-2.7
1,744,013	-		GFF1720	0.54	+0.4
1,744,070	-		GFF1720	0.69	+0.1
1,744,078	-		GFF1720	0.71	-1.5
1,744,080	-		GFF1720	0.71	+1.9
1,744,080	-		GFF1720	0.71	-1.9
1,744,111	-		GFF1720	0.79	+1.2
1,744,120	+		GFF1720	0.81	-0.0
1,744,128	-		GFF1720	0.83	-0.0
1,744,128	-		GFF1720	0.83	+0.2
1,744,155	+				-0.2
1,744,172	+				-1.1
1,744,172	+				-0.6
1,744,185	-				-0.5
1,744,193	-				-0.0
1,744,193	-				+0.3
1,744,193	-				+0.1
1,744,208	+				+0.9
1,744,236	+				-0.4
1,744,250	-				+0.1
1,744,250	-				-0.2
1,744,270	+				+0.4
1,744,311	-				+1.0
1,744,331	+				+0.3
1,744,341	+				+0.6
1,744,341	+				-0.6
1,744,341	+				+0.2
1,744,349	-				-0.4
1,744,349	-				-0.2
1,744,349	-				+0.6
1,744,376	+				-0.7
1,744,392	-				+0.3
1,744,405	+				-0.1
1,744,431	+		GFF1721	0.12	-0.1
1,744,439	-		GFF1721	0.12	-0.0
1,744,472	+		GFF1721	0.14	+1.1
1,744,477	+		GFF1721	0.14	-0.5
1,744,485	-		GFF1721	0.15	+1.5
1,744,511	+		GFF1721	0.17	+0.6
1,744,511	+		GFF1721	0.17	-1.1
1,744,519	-		GFF1721	0.17	-0.6
1,744,521	+		GFF1721	0.17	-2.1
1,744,543	+		GFF1721	0.19	-0.1
1,744,551	-		GFF1721	0.19	+0.8
1,744,551	-		GFF1721	0.19	+0.4
1,744,565	+		GFF1721	0.20	-0.1
1,744,570	+		GFF1721	0.20	+0.3
1,744,593	+		GFF1721	0.22	+0.9
1,744,593	+		GFF1721	0.22	-0.3
1,744,601	+		GFF1721	0.22	-0.1
1,744,606	-		GFF1721	0.22	+0.6
1,744,609	-		GFF1721	0.23	+0.1
1,744,611	+		GFF1721	0.23	+0.5
1,744,611	+		GFF1721	0.23	-1.4
1,744,647	+		GFF1721	0.25	+0.9
1,744,648	+		GFF1721	0.25	-0.4
1,744,655	-		GFF1721	0.25	-0.9
1,744,677	+		GFF1721	0.27	+0.5
1,744,677	+		GFF1721	0.27	-0.1
1,744,677	+		GFF1721	0.27	-1.6
1,744,677	+		GFF1721	0.27	-0.1
1,744,677	+		GFF1721	0.27	+0.7
1,744,677	+		GFF1721	0.27	+1.3
1,744,685	-		GFF1721	0.27	-2.4
1,744,685	-		GFF1721	0.27	+0.6
1,744,685	-		GFF1721	0.27	-0.4
1,744,685	-		GFF1721	0.27	+0.8
1,744,685	-		GFF1721	0.27	-1.0
1,744,692	+		GFF1721	0.28	-1.4
1,744,700	-		GFF1721	0.28	+0.6
1,744,701	+		GFF1721	0.28	-0.4
1,744,701	+		GFF1721	0.28	+0.4
1,744,709	-		GFF1721	0.29	-1.1
1,744,721	+		GFF1721	0.30	+1.8
1,744,721	+		GFF1721	0.30	-1.3
1,744,721	+		GFF1721	0.30	-0.4
1,744,721	+		GFF1721	0.30	+0.5
1,744,721	+		GFF1721	0.30	-0.5
1,744,721	+		GFF1721	0.30	+1.3
1,744,721	+		GFF1721	0.30	+0.1
1,744,729	-		GFF1721	0.30	-1.0
1,744,729	-		GFF1721	0.30	-0.1
1,744,729	-		GFF1721	0.30	-0.6
1,744,729	-		GFF1721	0.30	-1.5
1,744,729	-		GFF1721	0.30	+0.3
1,744,736	+		GFF1721	0.31	-0.2
1,744,736	+		GFF1721	0.31	-0.9
1,744,744	+		GFF1721	0.31	+0.6
1,744,744	-		GFF1721	0.31	-0.9
1,744,746	+		GFF1721	0.31	+0.1
1,744,751	+		GFF1721	0.31	-0.7
1,744,759	-		GFF1721	0.32	-0.6
1,744,761	+		GFF1721	0.32	+0.2
1,744,781	+		GFF1721	0.33	-2.1
1,744,807	-		GFF1721	0.35	-0.0
1,744,813	-		GFF1721	0.35	-0.9
1,744,818	-		GFF1721	0.36	+1.5
1,744,835	+		GFF1721	0.37	+0.5
1,744,835	+		GFF1721	0.37	-0.8
1,744,835	+		GFF1721	0.37	+0.4
1,744,843	-		GFF1721	0.37	-1.7
1,744,843	-		GFF1721	0.37	+0.1
1,744,843	-		GFF1721	0.37	+0.8
1,744,857	+		GFF1721	0.38	-1.1
1,744,871	-		GFF1721	0.39	+0.3
1,744,891	+		GFF1721	0.40	-1.5
1,744,943	-		GFF1721	0.43	+1.8
1,744,955	+		GFF1721	0.44	+0.5
1,744,967	+		GFF1721	0.45	-0.7
1,744,970	-		GFF1721	0.45	+1.6
1,744,970	-		GFF1721	0.45	-0.2
1,744,978	-		GFF1721	0.46	+0.8
1,744,978	-		GFF1721	0.46	+0.0
1,744,988	+		GFF1721	0.46	-2.1
1,744,988	+		GFF1721	0.46	+0.9
1,744,988	+		GFF1721	0.46	+0.9
1,744,988	+		GFF1721	0.46	-1.1
1,744,988	+		GFF1721	0.46	+0.4
1,744,988	+		GFF1721	0.46	+1.0
1,744,988	+		GFF1721	0.46	-0.3
1,744,988	+		GFF1721	0.46	-1.3
1,744,996	-		GFF1721	0.47	-0.3
1,744,996	-		GFF1721	0.47	-2.4
1,744,996	-		GFF1721	0.47	-0.1
1,744,996	-		GFF1721	0.47	+0.2
1,745,018	-		GFF1721	0.48	-1.7
1,745,066	-		GFF1721	0.51	+0.7
1,745,120	-		GFF1721	0.54	+1.2
1,745,125	+		GFF1721	0.55	-1.5
1,745,143	+		GFF1721	0.56	-0.7
1,745,168	+		GFF1721	0.57	+0.7
1,745,176	-		GFF1721	0.58	+0.2
1,745,195	-		GFF1721	0.59	-0.4
1,745,204	-		GFF1721	0.60	-0.5
1,745,210	-		GFF1721	0.60	+0.5
1,745,235	+		GFF1721	0.62	+0.3
1,745,250	+		GFF1721	0.63	-0.6
1,745,263	+		GFF1721	0.63	-0.2
1,745,268	+		GFF1721	0.64	+1.8
1,745,268	+		GFF1721	0.64	+0.7
1,745,268	+		GFF1721	0.64	-0.9
1,745,268	+		GFF1721	0.64	-0.7
1,745,268	+		GFF1721	0.64	+0.4
1,745,268	+		GFF1721	0.64	-1.6
1,745,268	+		GFF1721	0.64	-1.3
1,745,268	+		GFF1721	0.64	-1.7
1,745,268	+		GFF1721	0.64	-1.7
1,745,268	+		GFF1721	0.64	+1.3
1,745,268	+		GFF1721	0.64	-2.1
1,745,268	+		GFF1721	0.64	-1.6
1,745,271	-		GFF1721	0.64	+0.9
1,745,276	-		GFF1721	0.64	+0.4
1,745,276	-		GFF1721	0.64	+0.1
1,745,276	-		GFF1721	0.64	-0.5
1,745,276	-		GFF1721	0.64	+0.4
1,745,276	-		GFF1721	0.64	-0.2
1,745,276	-		GFF1721	0.64	-0.5
1,745,276	-		GFF1721	0.64	+0.1
1,745,276	-		GFF1721	0.64	-0.6
1,745,276	-		GFF1721	0.64	+0.2
1,745,276	-		GFF1721	0.64	-0.9
1,745,276	-		GFF1721	0.64	-1.6
1,745,276	-		GFF1721	0.64	+1.3
1,745,283	+		GFF1721	0.65	+0.9
1,745,326	+		GFF1721	0.67	-1.1
1,745,328	+		GFF1721	0.67	-1.7
1,745,331	-		GFF1721	0.68	-1.7
1,745,339	-		GFF1721	0.68	+0.5
1,745,349	-		GFF1721	0.69	+0.6
1,745,388	+		GFF1721	0.71	+1.2
1,745,389	+		GFF1721	0.71	-0.6
1,745,396	-		GFF1721	0.72	-1.0
1,745,396	-		GFF1721	0.72	-0.8
1,745,402	+		GFF1721	0.72	-1.0
1,745,404	-		GFF1721	0.72	+0.2
1,745,410	-		GFF1721	0.73	+0.4
1,745,436	-		GFF1721	0.74	+0.4
1,745,438	-		GFF1721	0.74	+0.6
1,745,440	-		GFF1721	0.74	-1.3
1,745,441	-		GFF1721	0.74	-0.1
1,745,465	-		GFF1721	0.76	-0.1
1,745,522	+		GFF1721	0.80	-2.2
1,745,522	+		GFF1721	0.80	-0.7
1,745,530	-		GFF1721	0.80	-1.7
1,745,530	-		GFF1721	0.80	+0.3
1,745,547	+		GFF1721	0.81	-1.5
1,745,547	+		GFF1721	0.81	+1.1
1,745,547	-		GFF1721	0.81	-0.2
1,745,553	-		GFF1721	0.81	-0.9
1,745,555	-		GFF1721	0.82	+1.2
1,745,560	-		GFF1721	0.82	-0.9
1,745,565	-		GFF1721	0.82	-1.1
1,745,569	+		GFF1721	0.82	+0.8
1,745,577	-		GFF1721	0.83	-0.7
1,745,578	-		GFF1721	0.83	-0.4
1,745,582	-		GFF1721	0.83	-0.2
1,745,588	-		GFF1721	0.84	+1.1
1,745,641	+		GFF1721	0.87	+0.2
1,745,680	+		GFF1721	0.89	+0.4
1,745,716	+				-2.5
1,745,716	-				-1.0
1,745,717	+				-0.4
1,745,737	-				-0.2
1,745,751	-				-2.1
1,745,755	+				-0.6
1,745,771	+				-1.0
1,745,778	+				+1.2
1,745,779	-				-0.0
1,745,779	-				+0.1
1,745,779	-				-0.2
1,745,783	+				+1.5
1,745,793	+				-1.9
1,745,809	+				-1.3
1,745,809	+				+0.8
1,745,817	+				+0.1
1,745,830	-				+1.0
1,745,853	-				-1.9
1,745,878	-				-1.7
1,745,886	+				-1.4
1,745,896	-				-0.3
1,745,896	-				+0.4
1,745,907	+				-0.7
1,745,933	-				+0.4
1,745,947	+				-0.2
1,745,955	-				-0.9
1,745,985	+				-1.9
1,745,985	+				-2.0
1,745,993	-				-0.5
1,746,020	-				-1.8
1,746,031	-				+0.2
1,746,062	-				-1.5
1,746,067	-				+0.6
1,746,076	+				+1.5
1,746,086	+				-0.3
1,746,092	+				-1.5
1,746,092	+				-0.9
1,746,100	-				-0.3
1,746,100	-				-1.6
1,746,102	+				-0.1
1,746,110	-				-2.3
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