Strain Fitness in Sphingobium sp. HT1-2 around GFF1692

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,714,210	-		GFF1690	0.84	-0.1
1,714,258	+		GFF1690	0.88	-0.8
1,714,306	+				-0.2
1,714,388	+				+0.4
1,714,396	-				+0.3
1,714,440	+				+0.0
1,714,487	+		GFF1691	0.12	-1.9
1,714,487	+		GFF1691	0.12	+0.5
1,714,487	+		GFF1691	0.12	-0.7
1,714,487	+		GFF1691	0.12	-1.2
1,714,487	+		GFF1691	0.12	+1.4
1,714,487	+		GFF1691	0.12	-0.4
1,714,495	+		GFF1691	0.13	-0.3
1,714,495	-		GFF1691	0.13	-0.4
1,714,495	-		GFF1691	0.13	+0.6
1,714,495	-		GFF1691	0.13	+0.3
1,714,495	-		GFF1691	0.13	+1.1
1,714,515	+		GFF1691	0.16	-0.6
1,714,520	+		GFF1691	0.16	+0.6
1,714,522	+		GFF1691	0.17	-1.6
1,714,523	-		GFF1691	0.17	-0.8
1,714,527	+		GFF1691	0.17	+0.2
1,714,535	+		GFF1691	0.18	-0.6
1,714,535	+		GFF1691	0.18	-0.3
1,714,535	+		GFF1691	0.18	-1.5
1,714,535	+		GFF1691	0.18	-0.7
1,714,535	-		GFF1691	0.18	-0.8
1,714,540	+		GFF1691	0.19	-0.0
1,714,540	+		GFF1691	0.19	+0.9
1,714,540	+		GFF1691	0.19	+0.9
1,714,543	-		GFF1691	0.19	+1.1
1,714,543	-		GFF1691	0.19	-1.4
1,714,543	-		GFF1691	0.19	-0.2
1,714,543	-		GFF1691	0.19	+1.2
1,714,543	-		GFF1691	0.19	-1.0
1,714,548	-		GFF1691	0.20	-0.7
1,714,548	-		GFF1691	0.20	+0.3
1,714,548	-		GFF1691	0.20	-0.5
1,714,556	+		GFF1691	0.21	+0.6
1,714,569	-		GFF1691	0.23	-2.4
1,714,598	-		GFF1691	0.27	-0.0
1,714,700	+		GFF1691	0.40	+1.2
1,714,700	+		GFF1691	0.40	+0.9
1,714,708	-		GFF1691	0.41	-1.8
1,714,722	+		GFF1691	0.43	-0.1
1,714,722	+		GFF1691	0.43	-1.1
1,714,722	+		GFF1691	0.43	+0.7
1,714,722	+		GFF1691	0.43	-0.2
1,714,722	+		GFF1691	0.43	+0.4
1,714,722	+		GFF1691	0.43	-1.7
1,714,722	+		GFF1691	0.43	+0.9
1,714,730	-		GFF1691	0.44	+0.7
1,714,730	-		GFF1691	0.44	-0.6
1,714,730	-		GFF1691	0.44	-1.2
1,714,730	-		GFF1691	0.44	-0.2
1,714,730	-		GFF1691	0.44	+1.5
1,714,730	-		GFF1691	0.44	-0.6
1,714,730	-		GFF1691	0.44	+1.2
1,714,753	-		GFF1691	0.47	-0.4
1,714,796	-		GFF1691	0.53	-1.4
1,714,799	+		GFF1691	0.53	-0.6
1,714,807	-		GFF1691	0.55	+0.5
1,714,836	+		GFF1691	0.58	+1.1
1,714,844	-		GFF1691	0.59	+0.2
1,714,846	+		GFF1691	0.60	+1.2
1,714,846	+		GFF1691	0.60	+0.2
1,714,846	+		GFF1691	0.60	+0.7
1,714,846	+		GFF1691	0.60	-0.8
1,714,846	+		GFF1691	0.60	+1.4
1,714,846	+		GFF1691	0.60	-0.7
1,714,846	+		GFF1691	0.60	-0.6
1,714,846	+		GFF1691	0.60	-0.4
1,714,846	+		GFF1691	0.60	+0.3
1,714,846	+		GFF1691	0.60	-0.9
1,714,846	+		GFF1691	0.60	-0.6
1,714,846	+		GFF1691	0.60	-0.5
1,714,846	+		GFF1691	0.60	+0.6
1,714,854	-		GFF1691	0.61	+1.0
1,714,854	-		GFF1691	0.61	-1.7
1,714,854	-		GFF1691	0.61	-1.9
1,714,854	-		GFF1691	0.61	+0.5
1,714,854	-		GFF1691	0.61	-0.6
1,714,854	-		GFF1691	0.61	-2.8
1,714,854	-		GFF1691	0.61	-0.6
1,714,854	-		GFF1691	0.61	-1.1
1,714,854	-		GFF1691	0.61	-0.0
1,714,854	-		GFF1691	0.61	-0.5
1,714,862	+		GFF1691	0.62	+0.5
1,714,867	+		GFF1691	0.63	-0.3
1,714,886	+		GFF1691	0.65	+0.1
1,714,894	-		GFF1691	0.66	+1.7
1,714,904	-		GFF1691	0.67	+0.6
1,714,906	-		GFF1691	0.68	+0.2
1,714,924	-		GFF1691	0.70	+0.3
1,714,957	+		GFF1691	0.75	+0.1
1,714,957	-		GFF1691	0.75	-0.3
1,714,986	-		GFF1691	0.78	+0.0
1,715,032	+		GFF1691	0.85	+1.1
1,715,050	-		GFF1691	0.87	+1.0
1,715,065	+		GFF1691	0.89	+0.1
1,715,091	-				-0.3
1,715,108	+				+0.7
1,715,111	-				-0.1
1,715,111	-				-0.6
1,715,112	+				+1.4
1,715,120	-				-1.3
1,715,129	+				-1.5
1,715,129	+				+0.0
1,715,129	+				-1.1
1,715,137	-				+0.6
1,715,137	-				-0.3
1,715,137	-				-0.4
1,715,137	-				-1.3
1,715,137	-				+0.5
1,715,194	+				-1.3
1,715,194	+				-0.1
1,715,204	+				+0.6
1,715,204	+				+1.0
1,715,204	+				-0.9
1,715,204	+				-0.4
1,715,204	+				-1.9
1,715,212	-				-1.7
1,715,212	-				-2.0
1,715,224	+				+0.3
1,715,224	+				+0.8
1,715,224	+				-0.1
1,715,224	+				+0.4
1,715,224	+				-0.4
1,715,224	+				-0.3
1,715,224	+				-1.3
1,715,224	+				-1.7
1,715,224	+				+0.5
1,715,224	+				+0.7
1,715,224	+				-0.6
1,715,224	+				-0.4
1,715,224	+				+0.2
1,715,224	+				-0.1
1,715,224	+				-0.8
1,715,224	+				-0.5
1,715,232	+				-1.0
1,715,232	-				-1.1
1,715,232	-				-0.7
1,715,232	-				-0.5
1,715,232	-				+0.3
1,715,232	-				-1.2
1,715,232	-				+0.2
1,715,232	-				-0.4
1,715,232	-				-0.1
1,715,232	-				-1.3
1,715,232	-				-1.1
1,715,232	-				-0.3
1,715,232	-				+0.3
1,715,232	-				+0.2
1,715,232	-				+0.5
1,715,232	-				-0.2
1,715,232	-				-0.8
1,715,273	+				-0.4
1,715,273	+				+0.1
1,715,273	+				-0.0
1,715,273	+				+0.6
1,715,281	-				+0.2
1,715,281	-				+0.4
1,715,281	-				+0.7
1,715,281	-				-0.9
1,715,324	+				-1.9
1,715,333	-				+1.3
1,715,354	+		GFF1692	0.12	-0.1
1,715,402	+		GFF1692	0.15	-0.8
1,715,403	+		GFF1692	0.15	-0.9
1,715,423	+		GFF1692	0.17	+0.5
1,715,436	-		GFF1692	0.18	+0.4
1,715,468	+		GFF1692	0.20	-0.3
1,715,468	+		GFF1692	0.20	-0.1
1,715,473	+		GFF1692	0.21	+0.5
1,715,487	+		GFF1692	0.22	-1.5
1,715,489	+		GFF1692	0.22	-1.0
1,715,505	+		GFF1692	0.23	+0.2
1,715,552	-		GFF1692	0.27	+0.9
1,715,559	+		GFF1692	0.27	-0.3
1,715,567	-		GFF1692	0.28	-2.2
1,715,571	-		GFF1692	0.28	+0.4
1,715,578	-		GFF1692	0.29	-1.7
1,715,583	-		GFF1692	0.29	-0.0
1,715,591	+		GFF1692	0.30	+0.4
1,715,591	+		GFF1692	0.30	+0.0
1,715,591	+		GFF1692	0.30	-2.1
1,715,599	-		GFF1692	0.30	+0.1
1,715,599	-		GFF1692	0.30	-0.6
1,715,621	+		GFF1692	0.32	+0.6
1,715,624	+		GFF1692	0.32	-0.4
1,715,626	+		GFF1692	0.32	-0.3
1,715,629	-		GFF1692	0.33	-1.5
1,715,629	-		GFF1692	0.33	-1.5
1,715,634	-		GFF1692	0.33	-0.7
1,715,634	-		GFF1692	0.33	+0.2
1,715,634	-		GFF1692	0.33	-0.8
1,715,675	+		GFF1692	0.36	-2.8
1,715,685	+		GFF1692	0.37	+0.1
1,715,690	+		GFF1692	0.37	-1.5
1,715,692	+		GFF1692	0.37	-1.4
1,715,692	+		GFF1692	0.37	-0.1
1,715,722	+		GFF1692	0.40	+0.4
1,715,730	-		GFF1692	0.40	-1.3
1,715,768	+		GFF1692	0.43	-0.1
1,715,768	+		GFF1692	0.43	+0.3
1,715,776	-		GFF1692	0.44	-1.3
1,715,776	-		GFF1692	0.44	+0.9
1,715,786	-		GFF1692	0.45	+0.8
1,715,790	+		GFF1692	0.45	-2.6
1,715,795	+		GFF1692	0.45	+0.5
1,715,795	+		GFF1692	0.45	+0.7
1,715,798	-		GFF1692	0.46	+0.6
1,715,803	-		GFF1692	0.46	+0.8
1,715,807	-		GFF1692	0.46	+0.6
1,715,832	-		GFF1692	0.48	+0.7
1,715,886	+		GFF1692	0.52	-2.4
1,715,887	+		GFF1692	0.52	-2.9
1,715,894	-		GFF1692	0.53	-0.5
1,715,948	+		GFF1692	0.57	-2.6
1,715,956	-		GFF1692	0.58	-1.1
1,716,002	+		GFF1692	0.61	+1.3
1,716,002	+		GFF1692	0.61	+2.0
1,716,002	+		GFF1692	0.61	-0.6
1,716,002	+		GFF1692	0.61	-0.2
1,716,010	-		GFF1692	0.62	-1.3
1,716,010	-		GFF1692	0.62	+1.1
1,716,010	-		GFF1692	0.62	-0.7
1,716,010	-		GFF1692	0.62	-1.1
1,716,010	-		GFF1692	0.62	+0.2
1,716,010	-		GFF1692	0.62	+0.3
1,716,012	+		GFF1692	0.62	+0.2
1,716,020	-		GFF1692	0.63	+0.1
1,716,026	+		GFF1692	0.63	-0.3
1,716,036	+		GFF1692	0.64	+0.4
1,716,036	+		GFF1692	0.64	-0.6
1,716,036	+		GFF1692	0.64	+0.7
1,716,036	+		GFF1692	0.64	-0.1
1,716,043	+		GFF1692	0.64	-0.7
1,716,043	+		GFF1692	0.64	-0.6
1,716,043	+		GFF1692	0.64	-0.2
1,716,043	+		GFF1692	0.64	+0.6
1,716,044	-		GFF1692	0.64	-0.3
1,716,044	-		GFF1692	0.64	-1.9
1,716,051	-		GFF1692	0.65	+0.3
1,716,051	-		GFF1692	0.65	-0.0
1,716,051	-		GFF1692	0.65	-0.2
1,716,062	-		GFF1692	0.66	-0.1
1,716,080	+		GFF1692	0.67	-0.1
1,716,080	+		GFF1692	0.67	-0.7
1,716,096	-		GFF1692	0.68	-2.2
1,716,096	-		GFF1692	0.68	+0.7
1,716,107	+		GFF1692	0.69	-0.6
1,716,114	+		GFF1692	0.70	-0.1
1,716,114	+		GFF1692	0.70	-0.7
1,716,114	+		GFF1692	0.70	-1.1
1,716,114	+		GFF1692	0.70	+0.5
1,716,122	-		GFF1692	0.70	-0.6
1,716,137	+		GFF1692	0.72	-0.8
1,716,154	-		GFF1692	0.73	-0.3
1,716,159	-		GFF1692	0.73	-0.4
1,716,160	+		GFF1692	0.73	+0.5
1,716,163	-		GFF1692	0.74	-0.7
1,716,163	-		GFF1692	0.74	-1.3
1,716,164	-		GFF1692	0.74	+0.8
1,716,193	-		GFF1692	0.76	+0.5
1,716,210	-		GFF1692	0.77	-1.0
1,716,300	+		GFF1692	0.84	+1.0
1,716,308	+		GFF1692	0.85	+0.2
1,716,308	+		GFF1692	0.85	+0.6
1,716,316	-		GFF1692	0.85	+0.8
1,716,335	+		GFF1692	0.87	-1.6
1,716,343	-		GFF1692	0.87	-0.1
1,716,343	-		GFF1692	0.87	+0.3
1,716,413	-				-1.5
1,716,424	+				-0.3
1,716,436	+				-0.5
1,716,436	+				+0.1
1,716,444	-				-1.4
1,716,464	-				-1.3
1,716,479	+				-0.2
1,716,497	+				-1.7
1,716,504	+				-1.7
1,716,506	+				-0.0
1,716,512	+				+0.5
1,716,512	+				-0.2
1,716,512	+				-0.9
1,716,512	-				+0.6
1,716,512	-				+0.4
1,716,518	+				+0.2
1,716,520	-				+0.5
1,716,520	-				+0.1
1,716,521	-				+0.7
1,716,521	-				-0.7
1,716,521	-				-1.9
1,716,526	-				-1.6
1,716,526	-				-0.4
1,716,526	-				-0.5
1,716,526	-				-1.0
1,716,527	+				-0.9
1,716,535	-				-0.3
1,716,597	+				-0.4
1,716,628	+				-0.1
1,716,634	+				+0.4
1,716,634	+				-1.8
1,716,636	-				+0.9
1,716,642	-				-1.4
1,716,647	-				+1.5
1,716,647	-				-1.1
1,716,647	-				+0.3
1,716,653	-				+1.7
1,716,672	+				+0.7
1,716,703	+		GFF1693	0.11	-1.1
1,716,708	+		GFF1693	0.12	+1.0
1,716,725	-		GFF1693	0.17	-1.5
1,716,730	-		GFF1693	0.19	-0.1
1,716,737	-		GFF1693	0.21	-1.9
1,716,747	-		GFF1693	0.23	-0.3
1,716,751	+		GFF1693	0.25	+0.1
1,716,751	+		GFF1693	0.25	-0.3
1,716,759	-		GFF1693	0.27	-0.3
1,716,759	-		GFF1693	0.27	-0.9
1,716,778	-		GFF1693	0.32	-3.2
1,716,801	-		GFF1693	0.39	-1.6
1,716,801	-		GFF1693	0.39	+0.1
1,716,801	-		GFF1693	0.39	+0.2
1,716,814	-		GFF1693	0.43	-0.4
1,716,842	-		GFF1693	0.51	-0.1
1,716,851	+		GFF1693	0.54	-2.1
1,716,860	+		GFF1693	0.56	+0.5
1,716,863	-		GFF1693	0.57	+1.0
1,716,879	+		GFF1693	0.62	-1.1
1,716,887	-		GFF1693	0.64	-0.6
1,716,887	-		GFF1693	0.64	+0.1
1,716,887	-		GFF1693	0.64	+0.2
1,716,897	+		GFF1693	0.67	-0.4
1,716,897	-		GFF1693	0.67	+0.4
1,716,899	+		GFF1693	0.68	+0.8
1,716,904	+		GFF1693	0.69	-0.1
1,716,905	-		GFF1693	0.69	-0.1
1,716,907	-		GFF1693	0.70	+0.2
1,716,919	+		GFF1693	0.73	-0.0
1,716,927	-		GFF1693	0.76	+0.1
1,716,942	-		GFF1693	0.80	+1.3
1,716,962	+		GFF1693	0.86	-2.4
1,716,962	-		GFF1693	0.86	-0.9
1,716,975	+		GFF1693	0.90	+0.4
1,716,975	+		GFF1693	0.90	-1.0
1,716,975	+		GFF1693	0.90	+0.7
1,716,975	+		GFF1693	0.90	-0.6
1,716,980	+				-1.0
1,716,983	-				-1.3
1,716,983	-				+0.4
1,716,983	-				+0.4
1,716,983	-				-2.3
1,716,985	+				-0.6
1,716,988	-				+0.5
1,716,988	-				+0.5
1,716,988	-				-0.5
1,716,988	-				-0.3
1,716,988	-				-0.2
1,716,993	-				+0.8
1,716,993	-				-0.2
1,716,993	-				+0.1
1,717,002	+				-1.4
1,717,020	+				+0.5
1,717,028	-				+0.1
1,717,028	-				+0.3
1,717,045	-				-0.3
1,717,045	-				+0.2
1,717,051	+				-0.5
1,717,052	+				+0.9
1,717,060	+				-0.2
1,717,069	+				+0.1
1,717,077	-				-0.9
1,717,084	+				-1.1
1,717,094	+				+0.7
1,717,102	-				-0.9
1,717,106	+				-0.7
1,717,107	-				+0.1
1,717,121	-				-0.5
1,717,126	+				-0.1
1,717,126	+				-0.6
1,717,128	+				+0.4
1,717,134	-				-0.4
1,717,143	+				+0.3
1,717,167	+				+0.5
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1,717,365	+				+0.6
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1,717,375	+				-1.4
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1,717,375	-				-0.2
1,717,383	-				+1.1
1,717,383	-				+0.7
1,717,383	-				+1.6
1,717,383	-				+0.4
1,717,383	-				-0.1
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1,717,383	-				-2.1
1,717,383	-				-1.8
1,717,393	+				-0.4
1,717,395	-				-0.2
1,717,401	-				+0.4
1,717,405	+				-0.1
1,717,419	+				+0.7
1,717,444	+				-0.0
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1,717,452	-				+0.4
1,717,456	+				-1.1
1,717,456	+				-0.5
1,717,464	-				-0.2
1,717,480	-				+0.7