Strain Fitness in Sphingobium sp. HT1-2 around GFF1667

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,695,452	-		GFF1666	0.29	+1.0
1,695,452	-		GFF1666	0.29	+0.3
1,695,500	+		GFF1666	0.32	-0.1
1,695,517	+		GFF1666	0.34	-1.0
1,695,544	+		GFF1666	0.36	-0.5
1,695,544	+		GFF1666	0.36	-0.3
1,695,544	+		GFF1666	0.36	-1.5
1,695,548	+		GFF1666	0.36	-0.5
1,695,550	-		GFF1666	0.36	-0.4
1,695,558	+		GFF1666	0.37	-0.5
1,695,558	+		GFF1666	0.37	-0.1
1,695,558	+		GFF1666	0.37	-0.6
1,695,561	-		GFF1666	0.37	-0.5
1,695,561	-		GFF1666	0.37	-0.3
1,695,561	-		GFF1666	0.37	-0.7
1,695,566	-		GFF1666	0.38	-1.9
1,695,566	-		GFF1666	0.38	-0.3
1,695,582	+		GFF1666	0.39	-0.7
1,695,629	-		GFF1666	0.42	+0.4
1,695,631	+		GFF1666	0.43	+0.3
1,695,631	+		GFF1666	0.43	-1.8
1,695,631	+		GFF1666	0.43	-0.3
1,695,639	-		GFF1666	0.43	-0.5
1,695,639	-		GFF1666	0.43	+0.4
1,695,650	+		GFF1666	0.44	-1.4
1,695,687	-		GFF1666	0.47	-0.6
1,695,726	-		GFF1666	0.50	-1.2
1,695,747	+		GFF1666	0.51	-1.4
1,695,761	+		GFF1666	0.52	-1.6
1,695,766	+		GFF1666	0.53	-0.6
1,695,766	+		GFF1666	0.53	-0.8
1,695,766	+		GFF1666	0.53	-1.1
1,695,772	+		GFF1666	0.53	-0.9
1,695,772	+		GFF1666	0.53	-0.9
1,695,774	-		GFF1666	0.53	-0.5
1,695,790	+		GFF1666	0.55	-0.4
1,695,790	+		GFF1666	0.55	+0.1
1,695,798	-		GFF1666	0.55	-0.2
1,695,805	-		GFF1666	0.56	+1.3
1,695,806	+		GFF1666	0.56	-2.6
1,695,806	+		GFF1666	0.56	-0.4
1,695,814	-		GFF1666	0.57	+1.0
1,695,816	+		GFF1666	0.57	-0.4
1,695,858	+		GFF1666	0.60	-0.5
1,695,874	+		GFF1666	0.61	-1.8
1,695,883	+		GFF1666	0.62	-0.3
1,695,899	-		GFF1666	0.63	-0.3
1,695,927	+		GFF1666	0.65	-1.9
1,695,936	-		GFF1666	0.66	-1.1
1,695,993	+		GFF1666	0.70	-0.6
1,695,998	+		GFF1666	0.71	+0.9
1,695,998	+		GFF1666	0.71	+1.4
1,695,998	+		GFF1666	0.71	-2.0
1,696,006	-		GFF1666	0.71	-1.8
1,696,006	-		GFF1666	0.71	+0.7
1,696,006	-		GFF1666	0.71	-0.1
1,696,010	-		GFF1666	0.72	+1.2
1,696,016	-		GFF1666	0.72	-0.1
1,696,022	+		GFF1666	0.72	+1.1
1,696,026	+		GFF1666	0.73	-2.0
1,696,026	+		GFF1666	0.73	-0.4
1,696,026	+		GFF1666	0.73	+0.2
1,696,026	+		GFF1666	0.73	-2.5
1,696,026	+		GFF1666	0.73	-0.0
1,696,026	+		GFF1666	0.73	-2.9
1,696,033	+		GFF1666	0.73	-0.6
1,696,034	-		GFF1666	0.73	+0.7
1,696,080	-		GFF1666	0.77	-1.4
1,696,080	-		GFF1666	0.77	-1.2
1,696,080	-		GFF1666	0.77	+0.5
1,696,095	+		GFF1666	0.78	+0.2
1,696,103	-		GFF1666	0.79	-0.3
1,696,133	+		GFF1666	0.81	+0.7
1,696,138	+		GFF1666	0.81	-0.2
1,696,171	+		GFF1666	0.84	-0.8
1,696,197	+		GFF1666	0.86	+0.9
1,696,215	-		GFF1666	0.87	+0.8
1,696,219	+		GFF1666	0.88	+1.0
1,696,223	+		GFF1666	0.88	-0.3
1,696,323	+				-0.3
1,696,344	+				-0.4
1,696,345	-				+1.1
1,696,345	-				-0.1
1,696,346	+				-0.2
1,696,364	-				-0.0
1,696,364	-				+0.4
1,696,369	+				-1.3
1,696,401	+				+0.0
1,696,413	+				+0.5
1,696,415	+				+0.2
1,696,423	-				-1.5
1,696,424	+				-0.5
1,696,432	-				+0.1
1,696,498	+		GFF1667	0.15	+0.6
1,696,506	+		GFF1667	0.17	-1.3
1,696,533	+		GFF1667	0.22	+0.4
1,696,533	+		GFF1667	0.22	-0.4
1,696,534	-		GFF1667	0.22	-0.8
1,696,537	+		GFF1667	0.22	-0.6
1,696,541	-		GFF1667	0.23	-1.7
1,696,541	-		GFF1667	0.23	+0.7
1,696,541	-		GFF1667	0.23	-0.1
1,696,541	-		GFF1667	0.23	-0.4
1,696,556	+		GFF1667	0.26	-0.3
1,696,564	-		GFF1667	0.28	+1.0
1,696,569	-		GFF1667	0.28	+1.1
1,696,569	-		GFF1667	0.28	+0.2
1,696,574	-		GFF1667	0.29	-0.1
1,696,598	+		GFF1667	0.34	-0.3
1,696,606	-		GFF1667	0.35	-0.1
1,696,606	-		GFF1667	0.35	+0.1
1,696,665	+		GFF1667	0.46	+0.9
1,696,665	+		GFF1667	0.46	-0.4
1,696,673	-		GFF1667	0.48	-1.2
1,696,673	-		GFF1667	0.48	+0.2
1,696,673	-		GFF1667	0.48	+0.6
1,696,675	+		GFF1667	0.48	-0.5
1,696,675	+		GFF1667	0.48	-0.2
1,696,683	-		GFF1667	0.50	+0.5
1,696,683	-		GFF1667	0.50	+0.6
1,696,683	-		GFF1667	0.50	+0.4
1,696,683	-		GFF1667	0.50	+0.6
1,696,683	-		GFF1667	0.50	+0.9
1,696,683	-		GFF1667	0.50	-0.1
1,696,683	-		GFF1667	0.50	+0.2
1,696,685	+		GFF1667	0.50	+0.5
1,696,693	-		GFF1667	0.52	+0.6
1,696,733	-		GFF1667	0.59	-0.6
1,696,753	-		GFF1667	0.63	+1.4
1,696,761	-		GFF1667	0.64	+0.1
1,696,768	-		GFF1667	0.66	-0.8
1,696,772	+		GFF1667	0.66	-0.1
1,696,785	-		GFF1667	0.69	-0.6
1,696,796	+		GFF1667	0.71	-0.0
1,696,798	-		GFF1667	0.71	-0.9
1,696,804	-		GFF1667	0.72	-0.2
1,696,806	+		GFF1667	0.73	+1.0
1,696,829	+		GFF1667	0.77	+0.1
1,696,840	+		GFF1667	0.79	-1.4
1,696,848	-		GFF1667	0.81	-0.1
1,696,848	-		GFF1667	0.81	+1.1
1,696,859	+		GFF1667	0.83	+0.2
1,696,867	-		GFF1667	0.84	-0.4
1,696,867	-		GFF1667	0.84	+0.3
1,696,910	-				-0.4
1,696,912	+				-1.9
1,696,928	+				+1.4
1,696,930	+				-0.5
1,696,943	-				-0.2
1,696,943	-				+0.2
1,696,981	+		GFF1668	0.11	-0.3
1,697,004	+		GFF1668	0.17	-1.7
1,697,021	+		GFF1668	0.22	-1.5
1,697,030	+		GFF1668	0.24	-1.9
1,697,032	-		GFF1668	0.25	-1.8
1,697,066	+		GFF1668	0.33	-2.4
1,697,066	+		GFF1668	0.33	-2.1
1,697,068	+		GFF1668	0.34	-1.5
1,697,068	+		GFF1668	0.34	-2.3
1,697,071	+		GFF1668	0.35	-2.7
1,697,071	+		GFF1668	0.35	-2.0
1,697,071	+		GFF1668	0.35	-2.4
1,697,071	+		GFF1668	0.35	-1.1
1,697,076	+		GFF1668	0.36	-2.2
1,697,079	-		GFF1668	0.37	-1.3
1,697,079	-		GFF1668	0.37	-2.8
1,697,098	+		GFF1668	0.42	-1.9
1,697,098	+		GFF1668	0.42	-1.7
1,697,118	-		GFF1668	0.47	-2.8
1,697,125	-		GFF1668	0.49	-2.4
1,697,170	+		GFF1668	0.60	-2.5
1,697,170	+		GFF1668	0.60	-1.8
1,697,170	+		GFF1668	0.60	-1.1
1,697,173	-		GFF1668	0.61	-0.1
1,697,173	-		GFF1668	0.61	-1.3
1,697,173	-		GFF1668	0.61	-1.7
1,697,174	+		GFF1668	0.61	-2.3
1,697,178	-		GFF1668	0.62	-1.6
1,697,219	+		GFF1668	0.73	-1.6
1,697,227	+		GFF1668	0.75	-3.9
1,697,227	-		GFF1668	0.75	-1.3
1,697,227	-		GFF1668	0.75	-1.4
1,697,245	-		GFF1668	0.80	-1.8
1,697,245	-		GFF1668	0.80	-2.8
1,697,245	-		GFF1668	0.80	-2.6
1,697,252	-		GFF1668	0.81	-1.8
1,697,252	-		GFF1668	0.81	-2.8
1,697,254	-		GFF1668	0.82	-1.9
1,697,259	+		GFF1668	0.83	-2.6
1,697,261	+		GFF1668	0.84	-2.1
1,697,266	+		GFF1668	0.85	-1.8
1,697,273	-		GFF1668	0.87	-1.9
1,697,274	-		GFF1668	0.87	-3.1
1,697,274	-		GFF1668	0.87	-2.7
1,697,274	-		GFF1668	0.87	-2.0
1,697,275	-		GFF1668	0.87	-1.9
1,697,287	+				-1.8
1,697,295	-				-1.3
1,697,299	+				-2.8
1,697,299	+				-2.1
1,697,307	-				-2.5
1,697,307	-				-2.9
1,697,307	-				-2.7
1,697,316	+				-0.8
1,697,321	-				-1.1
1,697,333	+				-2.6
1,697,369	-				-0.1
1,697,381	+				+0.2
1,697,382	+				+0.3
1,697,396	+				-0.3
1,697,396	+				+0.2
1,697,404	+				+1.3
1,697,404	+				-0.1
1,697,405	+				-0.9
1,697,412	-				+1.1
1,697,460	+		GFF1669	0.13	-0.7
1,697,460	+		GFF1669	0.13	+1.7
1,697,461	+		GFF1669	0.14	+0.9
1,697,469	-		GFF1669	0.21	-1.1
1,697,470	+		GFF1669	0.21	-1.0
1,697,470	+		GFF1669	0.21	+1.4
1,697,480	-		GFF1669	0.30	-0.1
1,697,482	-		GFF1669	0.32	+0.2
1,697,505	+		GFF1669	0.51	+0.1
1,697,505	+		GFF1669	0.51	+0.4
1,697,513	-		GFF1669	0.58	-0.0
1,697,520	+		GFF1669	0.64	+0.9
1,697,546	-		GFF1669	0.86	+1.0
1,697,555	-				+0.4
1,697,579	+				-0.1
1,697,618	-				+0.5
1,697,633	-				-0.7
1,697,640	+				-0.8
1,697,643	-				-1.0
1,697,646	+				-1.5
1,697,648	-				-1.8
1,697,650	+				-1.5
1,697,650	+				-0.6
1,697,651	+				-0.3
1,697,651	+				-0.0
1,697,654	-				+0.2
1,697,658	-				-1.1
1,697,659	-				-0.6
1,697,692	-				+1.2
1,697,734	+				+0.0
1,697,746	-				+0.7
1,697,780	+				-0.8
1,697,780	+				-0.5
1,697,790	+				-1.3
1,697,796	+		GFF1670	0.10	-2.0
1,697,804	-		GFF1670	0.11	-0.3
1,697,809	+		GFF1670	0.11	-0.5
1,697,817	-		GFF1670	0.11	-0.4
1,697,817	-		GFF1670	0.11	+1.8
1,697,834	-		GFF1670	0.12	-0.7
1,697,847	-		GFF1670	0.12	-0.6
1,697,862	+		GFF1670	0.13	+0.2
1,697,862	-		GFF1670	0.13	-0.2
1,697,872	+		GFF1670	0.14	+0.1
1,697,874	+		GFF1670	0.14	+0.2
1,697,880	+		GFF1670	0.14	+0.7