Strain Fitness in Sphingobium sp. HT1-2 around GFF1661

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,689,167	+		GFF1660	0.60	-1.7
1,689,167	+		GFF1660	0.60	-0.1
1,689,175	-		GFF1660	0.61	+0.1
1,689,175	-		GFF1660	0.61	+1.2
1,689,175	-		GFF1660	0.61	-0.3
1,689,175	-		GFF1660	0.61	+0.1
1,689,175	-		GFF1660	0.61	+1.1
1,689,182	+		GFF1660	0.61	-1.9
1,689,184	-		GFF1660	0.61	+0.4
1,689,185	-		GFF1660	0.61	+0.0
1,689,188	+		GFF1660	0.61	-0.0
1,689,286	+		GFF1660	0.65	+0.9
1,689,286	-		GFF1660	0.65	-0.9
1,689,302	+		GFF1660	0.66	+0.2
1,689,302	+		GFF1660	0.66	+0.6
1,689,302	+		GFF1660	0.66	+0.9
1,689,310	-		GFF1660	0.66	+1.0
1,689,310	-		GFF1660	0.66	+1.2
1,689,310	-		GFF1660	0.66	+0.3
1,689,310	-		GFF1660	0.66	+0.3
1,689,325	+		GFF1660	0.67	-0.4
1,689,325	+		GFF1660	0.67	+1.0
1,689,325	+		GFF1660	0.67	-2.1
1,689,333	-		GFF1660	0.68	-0.7
1,689,333	-		GFF1660	0.68	+0.2
1,689,333	-		GFF1660	0.68	+0.6
1,689,333	-		GFF1660	0.68	-1.4
1,689,333	-		GFF1660	0.68	+0.9
1,689,333	-		GFF1660	0.68	-0.2
1,689,333	-		GFF1660	0.68	-0.7
1,689,333	-		GFF1660	0.68	-1.1
1,689,397	+		GFF1660	0.70	+0.3
1,689,414	+		GFF1660	0.71	+0.3
1,689,422	-		GFF1660	0.71	+0.3
1,689,424	+		GFF1660	0.72	-0.4
1,689,424	+		GFF1660	0.72	+0.4
1,689,425	-		GFF1660	0.72	+1.3
1,689,430	-		GFF1660	0.72	+0.1
1,689,430	-		GFF1660	0.72	-1.9
1,689,434	+		GFF1660	0.72	+0.3
1,689,439	+		GFF1660	0.72	-0.6
1,689,439	+		GFF1660	0.72	+0.1
1,689,439	+		GFF1660	0.72	+0.1
1,689,439	+		GFF1660	0.72	+0.3
1,689,447	-		GFF1660	0.73	-0.3
1,689,454	+		GFF1660	0.73	+0.8
1,689,474	+		GFF1660	0.74	+0.6
1,689,484	+		GFF1660	0.74	+0.3
1,689,489	+		GFF1660	0.74	+0.8
1,689,492	-		GFF1660	0.75	-0.8
1,689,492	-		GFF1660	0.75	+0.1
1,689,526	-		GFF1660	0.76	-1.2
1,689,528	-		GFF1660	0.76	-1.1
1,689,542	+		GFF1660	0.77	+0.3
1,689,548	+		GFF1660	0.77	-1.8
1,689,548	+		GFF1660	0.77	+0.7
1,689,548	+		GFF1660	0.77	+1.4
1,689,548	+		GFF1660	0.77	+0.1
1,689,556	-		GFF1660	0.77	-0.2
1,689,556	-		GFF1660	0.77	+2.6
1,689,574	+		GFF1660	0.78	+1.1
1,689,574	+		GFF1660	0.78	+0.8
1,689,574	+		GFF1660	0.78	+1.1
1,689,574	+		GFF1660	0.78	-0.8
1,689,574	+		GFF1660	0.78	+0.5
1,689,574	+		GFF1660	0.78	+1.6
1,689,574	+		GFF1660	0.78	+0.8
1,689,574	+		GFF1660	0.78	+0.5
1,689,574	+		GFF1660	0.78	+0.6
1,689,582	-		GFF1660	0.78	-1.0
1,689,582	-		GFF1660	0.78	+0.2
1,689,582	-		GFF1660	0.78	-1.0
1,689,582	-		GFF1660	0.78	+0.9
1,689,582	-		GFF1660	0.78	+0.1
1,689,587	-		GFF1660	0.79	+1.4
1,689,588	+		GFF1660	0.79	+0.7
1,689,588	+		GFF1660	0.79	-0.7
1,689,588	+		GFF1660	0.79	-0.9
1,689,594	-		GFF1660	0.79	+2.3
1,689,596	-		GFF1660	0.79	-0.0
1,689,596	-		GFF1660	0.79	+0.7
1,689,596	-		GFF1660	0.79	+1.1
1,689,612	-		GFF1660	0.80	-0.4
1,689,621	-		GFF1660	0.80	-0.4
1,689,635	+		GFF1660	0.81	-2.0
1,689,635	+		GFF1660	0.81	-0.1
1,689,666	+		GFF1660	0.82	+0.5
1,689,718	-		GFF1660	0.84	-0.1
1,689,720	+		GFF1660	0.85	-0.4
1,689,723	-		GFF1660	0.85	-0.6
1,689,728	-		GFF1660	0.85	-1.1
1,689,728	-		GFF1660	0.85	-0.7
1,689,728	-		GFF1660	0.85	-0.4
1,689,799	-		GFF1660	0.88	+0.0
1,689,819	+		GFF1660	0.89	-1.9
1,689,819	+		GFF1660	0.89	-1.2
1,689,819	+		GFF1660	0.89	+0.5
1,689,821	-		GFF1660	0.89	-0.5
1,689,827	+		GFF1660	0.89	+1.6
1,689,827	-		GFF1660	0.89	-0.9
1,689,827	-		GFF1660	0.89	-1.4
1,689,827	-		GFF1660	0.89	-0.3
1,689,831	-		GFF1660	0.89	+0.4
1,689,838	+		GFF1660	0.90	-0.8
1,689,844	-				+1.1
1,689,874	+				-0.2
1,689,882	-				+0.0
1,689,906	+				-0.7
1,689,929	+				-2.1
1,689,941	-				-0.2
1,689,941	-				-0.7
1,689,943	+				+0.6
1,689,957	-				-0.3
1,689,962	-				+0.1
1,689,964	+				-2.6
1,689,969	+				+1.2
1,689,970	-				+0.2
1,689,972	-				-0.4
1,689,972	-				-0.9
1,689,972	-				-0.3
1,689,980	-				-2.3
1,689,989	+				+0.4
1,690,002	+				+0.5
1,690,004	-				+0.3
1,690,004	-				-2.7
1,690,010	-				-0.2
1,690,015	+				+0.1
1,690,019	+				+0.5
1,690,028	-				-1.7
1,690,028	-				-0.1
1,690,028	-				-0.6
1,690,029	-				-1.9
1,690,035	-				+1.1
1,690,058	+				-2.3
1,690,064	+				+0.6
1,690,069	+				+0.2
1,690,069	+				-1.4
1,690,069	+				-1.1
1,690,069	+				+0.4
1,690,069	+				+0.5
1,690,069	+				+0.7
1,690,069	+				-0.0
1,690,070	+				-0.2
1,690,070	+				-0.5
1,690,070	+				+0.2
1,690,070	+				-0.4
1,690,076	+				+0.4
1,690,077	-				-0.7
1,690,077	-				-0.4
1,690,077	-				+0.1
1,690,077	-				-0.4
1,690,077	-				-0.2
1,690,077	-				-1.9
1,690,078	-				-0.1
1,690,078	-				-0.6
1,690,099	-				-0.4
1,690,111	+				+1.4
1,690,119	-				-2.3
1,690,121	+				+0.7
1,690,121	+				-1.3
1,690,169	-				-1.5
1,690,183	-				-0.4
1,690,190	+				-0.4
1,690,190	+				+0.6
1,690,190	+				+1.7
1,690,198	-		GFF1661	0.10	-0.1
1,690,198	-		GFF1661	0.10	+0.3
1,690,208	+		GFF1661	0.11	-0.0
1,690,210	+		GFF1661	0.12	-1.1
1,690,210	+		GFF1661	0.12	+0.6
1,690,218	-		GFF1661	0.13	+0.6
1,690,254	+		GFF1661	0.18	+0.6
1,690,324	-		GFF1661	0.28	-0.3
1,690,344	+		GFF1661	0.31	-0.0
1,690,351	+		GFF1661	0.32	+0.5
1,690,446	+		GFF1661	0.46	-0.7
1,690,460	+		GFF1661	0.48	-0.3
1,690,460	+		GFF1661	0.48	+0.6
1,690,460	+		GFF1661	0.48	-1.0
1,690,460	+		GFF1661	0.48	+0.6
1,690,460	+		GFF1661	0.48	+0.7
1,690,460	+		GFF1661	0.48	-0.1
1,690,467	+		GFF1661	0.49	+0.9
1,690,467	+		GFF1661	0.49	-1.4
1,690,468	-		GFF1661	0.50	+1.2
1,690,468	-		GFF1661	0.50	+0.9
1,690,468	-		GFF1661	0.50	+0.0
1,690,468	-		GFF1661	0.50	-0.3
1,690,469	+		GFF1661	0.50	-0.8
1,690,513	+		GFF1661	0.56	+1.4
1,690,567	+		GFF1661	0.64	-0.9
1,690,588	-		GFF1661	0.67	-1.9
1,690,592	+		GFF1661	0.68	+1.3
1,690,592	+		GFF1661	0.68	+0.1
1,690,592	+		GFF1661	0.68	+0.6
1,690,592	+		GFF1661	0.68	+1.0
1,690,607	+		GFF1661	0.70	-0.6
1,690,607	+		GFF1661	0.70	-0.3
1,690,607	+		GFF1661	0.70	+0.3
1,690,607	+		GFF1661	0.70	+1.4
1,690,614	+		GFF1661	0.71	+0.3
1,690,649	+		GFF1661	0.76	-1.1
1,690,649	+		GFF1661	0.76	-1.9
1,690,677	+		GFF1661	0.80	+0.7
1,690,680	-		GFF1661	0.81	-1.3
1,690,680	-		GFF1661	0.81	+0.5
1,690,685	+		GFF1661	0.81	+0.8
1,690,685	-		GFF1661	0.81	+0.7
1,690,685	-		GFF1661	0.81	-2.2
1,690,690	-		GFF1661	0.82	-0.7
1,690,690	-		GFF1661	0.82	+0.5
1,690,735	+		GFF1661	0.89	-0.1
1,690,754	+				-0.6
1,690,775	+				-1.0
1,690,820	+				-0.3
1,690,820	+				-0.2
1,690,866	-				-1.1
1,690,890	+				-1.2
1,690,898	-				+0.2
1,690,898	-				+0.1
1,690,905	+				-0.5
1,690,942	-		GFF1662	0.14	+0.9
1,690,944	-		GFF1662	0.14	-1.6
1,690,948	-		GFF1662	0.15	-1.1
1,690,988	+		GFF1662	0.19	-1.0
1,691,004	+		GFF1662	0.21	-0.9
1,691,029	+		GFF1662	0.24	-1.0
1,691,039	+		GFF1662	0.25	-2.0
1,691,042	-		GFF1662	0.25	+0.4
1,691,042	-		GFF1662	0.25	-0.0
1,691,047	-		GFF1662	0.26	+0.1
1,691,047	-		GFF1662	0.26	+0.6
1,691,049	+		GFF1662	0.26	-0.4
1,691,051	+		GFF1662	0.26	-0.6
1,691,054	-		GFF1662	0.27	-0.3
1,691,057	-		GFF1662	0.27	+0.4
1,691,057	-		GFF1662	0.27	-1.4
1,691,057	-		GFF1662	0.27	+0.5
1,691,080	+		GFF1662	0.30	+0.8
1,691,088	-		GFF1662	0.31	-0.4
1,691,116	+		GFF1662	0.34	-0.4
1,691,117	+		GFF1662	0.34	-2.1
1,691,124	-		GFF1662	0.35	-0.5
1,691,124	-		GFF1662	0.35	-1.1
1,691,124	-		GFF1662	0.35	+0.2
1,691,125	-		GFF1662	0.35	+0.6
1,691,142	-		GFF1662	0.37	-0.3
1,691,159	+		GFF1662	0.39	-1.7
1,691,160	+		GFF1662	0.39	-0.2
1,691,198	-		GFF1662	0.43	-0.4
1,691,211	+		GFF1662	0.45	+0.2
1,691,212	+		GFF1662	0.45	+0.6
1,691,215	-		GFF1662	0.45	+0.7
1,691,219	-		GFF1662	0.46	+0.2
1,691,221	-		GFF1662	0.46	+0.1
1,691,245	-		GFF1662	0.49	-1.9
1,691,265	+		GFF1662	0.51	-0.1
1,691,275	+		GFF1662	0.52	+0.3
1,691,283	-		GFF1662	0.53	+0.2
1,691,283	-		GFF1662	0.53	+0.7
1,691,288	-		GFF1662	0.54	+1.5
1,691,297	+		GFF1662	0.55	-1.5
1,691,310	-		GFF1662	0.56	+0.1
1,691,312	+		GFF1662	0.56	-1.1
1,691,315	-		GFF1662	0.57	-2.2
1,691,339	+		GFF1662	0.59	-0.2
1,691,360	+		GFF1662	0.62	-0.9
1,691,399	-		GFF1662	0.66	-0.4
1,691,402	+		GFF1662	0.67	-0.4
1,691,403	+		GFF1662	0.67	-0.4
1,691,408	+		GFF1662	0.67	+0.7
1,691,408	+		GFF1662	0.67	-1.1
1,691,411	-		GFF1662	0.68	-1.0
1,691,412	+		GFF1662	0.68	-1.7
1,691,416	-		GFF1662	0.68	-0.2
1,691,416	-		GFF1662	0.68	+0.1
1,691,416	-		GFF1662	0.68	+1.1
1,691,444	-		GFF1662	0.71	-0.7
1,691,453	-		GFF1662	0.73	+0.7
1,691,469	+		GFF1662	0.74	+0.6
1,691,487	-		GFF1662	0.76	-0.1
1,691,489	+		GFF1662	0.77	+0.5
1,691,531	-		GFF1662	0.81	+0.7
1,691,576	+		GFF1662	0.87	-2.1
1,691,592	+		GFF1662	0.88	+0.4
1,691,592	+		GFF1662	0.88	-0.7
1,691,600	-		GFF1662	0.89	-0.5
1,691,609	+				+0.5
1,691,615	+				-0.4
1,691,623	-				+1.0
1,691,645	+				+0.6
1,691,645	+				-2.4
1,691,653	-				-0.6
1,691,655	+				+1.1
1,691,655	+				-2.1
1,691,655	+				+0.7
1,691,655	+				+0.1
1,691,655	+				+0.5
1,691,655	+				+0.7
1,691,661	+				-0.7
1,691,663	-				-0.2
1,691,666	+				+1.5
1,691,666	+				-0.6
1,691,669	-				+0.2
1,691,679	-				-0.7
1,691,686	-				-0.3
1,691,700	-				-0.1
1,691,705	-				+0.8
1,691,742	+				+0.8
1,691,749	-				-1.1
1,691,757	+				+0.5
1,691,805	+				-0.5
1,691,805	+				-1.3
1,691,805	+				-0.2
1,691,805	+				-1.0
1,691,805	+				-0.3
1,691,805	+				-2.3