Strain Fitness in Sphingobium sp. HT1-2 around GFF1594

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1593 and GFF1594 are separated by 62 nucleotidesGFF1594 and GFF1595 overlap by 4 nucleotidesGFF1595 and GFF1596 are separated by 56 nucleotides GFF1593 - Phosphogluconate dehydratase (EC 4.2.1.12), at 1,620,243 to 1,622,075 GFF1593 GFF1594 - Glucokinase (EC 2.7.1.2), at 1,622,138 to 1,623,118 GFF1594 GFF1595 - 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14), at 1,623,115 to 1,623,732 GFF1595 GFF1596 - hypothetical protein, at 1,623,789 to 1,624,310 GFF1596 Position (kb) 1622 1623 1624Strain fitness (log2 ratio) -2 -1 0 1 2at 1621.274 kb on - strand, within GFF1593at 1622.017 kb on + strandat 1622.188 kb on - strandat 1622.229 kb on - strandat 1622.361 kb on + strand, within GFF1594at 1622.380 kb on + strand, within GFF1594at 1622.386 kb on + strand, within GFF1594at 1622.574 kb on - strand, within GFF1594at 1622.611 kb on - strand, within GFF1594at 1622.623 kb on - strand, within GFF1594at 1622.721 kb on - strand, within GFF1594at 1622.758 kb on + strand, within GFF1594at 1622.790 kb on + strand, within GFF1594at 1622.855 kb on - strand, within GFF1594at 1622.883 kb on + strand, within GFF1594at 1622.891 kb on - strand, within GFF1594at 1622.930 kb on - strand, within GFF1594at 1622.944 kb on - strand, within GFF1594at 1622.949 kb on + strand, within GFF1594at 1622.957 kb on - strand, within GFF1594at 1623.089 kb on + strandat 1623.735 kb on - strandat 1623.816 kb on + strandat 1623.837 kb on + strandat 1623.858 kb on + strand, within GFF1596at 1623.858 kb on + strand, within GFF1596at 1623.858 kb on + strand, within GFF1596at 1623.886 kb on + strand, within GFF1596at 1623.892 kb on - strand, within GFF1596at 1623.922 kb on - strand, within GFF1596at 1623.960 kb on + strand, within GFF1596at 1623.965 kb on + strand, within GFF1596at 1623.968 kb on - strand, within GFF1596at 1624.016 kb on + strand, within GFF1596at 1624.017 kb on + strand, within GFF1596at 1624.017 kb on + strand, within GFF1596at 1624.017 kb on + strand, within GFF1596at 1624.017 kb on + strand, within GFF1596at 1624.017 kb on + strand, within GFF1596at 1624.024 kb on - strand, within GFF1596at 1624.024 kb on - strand, within GFF1596at 1624.025 kb on - strand, within GFF1596at 1624.025 kb on - strand, within GFF1596at 1624.025 kb on - strand, within GFF1596at 1624.025 kb on - strand, within GFF1596at 1624.025 kb on - strand, within GFF1596at 1624.025 kb on - strand, within GFF1596at 1624.025 kb on - strand, within GFF1596

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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1,621,274 - GFF1593 0.56 -0.9
1,622,017 + +0.1
1,622,188 - -0.6
1,622,229 - -0.4
1,622,361 + GFF1594 0.23 +0.1
1,622,380 + GFF1594 0.25 -0.2
1,622,386 + GFF1594 0.25 -0.4
1,622,574 - GFF1594 0.44 -2.1
1,622,611 - GFF1594 0.48 -2.0
1,622,623 - GFF1594 0.49 -1.6
1,622,721 - GFF1594 0.59 -0.2
1,622,758 + GFF1594 0.63 -2.6
1,622,790 + GFF1594 0.66 -0.4
1,622,855 - GFF1594 0.73 +0.4
1,622,883 + GFF1594 0.76 -0.6
1,622,891 - GFF1594 0.77 -1.0
1,622,930 - GFF1594 0.81 -1.8
1,622,944 - GFF1594 0.82 +0.1
1,622,949 + GFF1594 0.83 -2.0
1,622,957 - GFF1594 0.83 -0.6
1,623,089 + -0.6
1,623,735 - +1.8
1,623,816 + -0.8
1,623,837 + -0.5
1,623,858 + GFF1596 0.13 +0.8
1,623,858 + GFF1596 0.13 -0.9
1,623,858 + GFF1596 0.13 +1.3
1,623,886 + GFF1596 0.19 +0.3
1,623,892 - GFF1596 0.20 +0.5
1,623,922 - GFF1596 0.25 +0.1
1,623,960 + GFF1596 0.33 -0.4
1,623,965 + GFF1596 0.34 -0.0
1,623,968 - GFF1596 0.34 +1.0
1,624,016 + GFF1596 0.43 -0.0
1,624,017 + GFF1596 0.44 -0.0
1,624,017 + GFF1596 0.44 +0.9
1,624,017 + GFF1596 0.44 +0.6
1,624,017 + GFF1596 0.44 -0.2
1,624,017 + GFF1596 0.44 +0.4
1,624,024 - GFF1596 0.45 +0.5
1,624,024 - GFF1596 0.45 +0.5
1,624,025 - GFF1596 0.45 +0.3
1,624,025 - GFF1596 0.45 -1.7
1,624,025 - GFF1596 0.45 +0.9
1,624,025 - GFF1596 0.45 +0.6
1,624,025 - GFF1596 0.45 +1.5
1,624,025 - GFF1596 0.45 -0.9
1,624,025 - GFF1596 0.45 -1.0

Or see this region's nucleotide sequence