Strain Fitness in Sphingobium sp. HT1-2 around GFF1564

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,591,009	+		GFF1561	0.35	-0.4
1,591,009	+		GFF1561	0.35	+0.6
1,591,009	+		GFF1561	0.35	-1.4
1,591,009	+		GFF1561	0.35	-0.4
1,591,009	+		GFF1561	0.35	-0.7
1,591,014	+		GFF1561	0.37	-1.9
1,591,017	-		GFF1561	0.38	-0.9
1,591,024	+		GFF1561	0.40	+0.3
1,591,024	+		GFF1561	0.40	-0.1
1,591,032	-		GFF1561	0.43	-0.8
1,591,042	-		GFF1561	0.47	+0.2
1,591,042	-		GFF1561	0.47	-0.5
1,591,061	+		GFF1561	0.54	-2.4
1,591,066	+		GFF1561	0.56	+1.5
1,591,066	+		GFF1561	0.56	-0.1
1,591,071	+		GFF1561	0.58	-1.5
1,591,079	-		GFF1561	0.61	-1.4
1,591,079	-		GFF1561	0.61	-0.2
1,591,082	+		GFF1561	0.62	+0.2
1,591,087	-		GFF1561	0.64	+0.9
1,591,109	+		GFF1561	0.72	-0.1
1,591,109	+		GFF1561	0.72	-0.3
1,591,109	+		GFF1561	0.72	+0.8
1,591,109	+		GFF1561	0.72	-1.1
1,591,109	+		GFF1561	0.72	+0.0
1,591,109	+		GFF1561	0.72	-0.6
1,591,109	+		GFF1561	0.72	+1.0
1,591,109	+		GFF1561	0.72	-1.9
1,591,117	-		GFF1561	0.75	+0.6
1,591,117	-		GFF1561	0.75	-1.8
1,591,117	-		GFF1561	0.75	-0.5
1,591,117	-		GFF1561	0.75	+0.7
1,591,117	-		GFF1561	0.75	+0.6
1,591,117	-		GFF1561	0.75	-0.7
1,591,117	-		GFF1561	0.75	+0.5
1,591,128	+		GFF1561	0.79	-0.7
1,591,130	+		GFF1561	0.80	-0.7
1,591,135	+		GFF1561	0.81	+0.4
1,591,143	-		GFF1561	0.84	-1.1
1,591,143	-		GFF1561	0.84	-0.4
1,591,143	-		GFF1561	0.84	-0.1
1,591,143	-		GFF1561	0.84	+1.1
1,591,143	-		GFF1561	0.84	-1.4
1,591,143	-		GFF1561	0.84	-0.9
1,591,143	-		GFF1561	0.84	-1.7
1,591,148	+		GFF1561	0.86	-0.6
1,591,174	+				-1.6
1,591,175	-				-1.1
1,591,253	+				-1.4
1,591,303	-				+0.6
1,591,310	+				-0.8
1,591,313	-				-0.2
1,591,313	-				-0.3
1,591,313	-				-2.4
1,591,313	-				-0.4
1,591,314	+				-0.8
1,591,318	-				+0.4
1,591,322	-				-0.1
1,591,322	-				+0.4
1,591,322	-				+0.6
1,591,369	-		GFF1562	0.22	-1.3
1,591,406	-		GFF1562	0.33	-0.9
1,591,409	-		GFF1562	0.33	-1.2
1,591,411	+		GFF1562	0.34	-1.3
1,591,418	-		GFF1562	0.36	+1.2
1,591,418	-		GFF1562	0.36	-1.7
1,591,443	-		GFF1562	0.43	+0.1
1,591,479	-		GFF1562	0.53	-1.3
1,591,482	+		GFF1562	0.54	+0.0
1,591,482	+		GFF1562	0.54	+0.7
1,591,492	+		GFF1562	0.56	-0.0
1,591,492	+		GFF1562	0.56	+0.2
1,591,492	+		GFF1562	0.56	-0.1
1,591,500	-		GFF1562	0.59	-0.3
1,591,519	+		GFF1562	0.64	+1.2
1,591,519	+		GFF1562	0.64	-0.4
1,591,523	-		GFF1562	0.65	+0.3
1,591,529	+		GFF1562	0.67	+0.1
1,591,538	+		GFF1562	0.69	+0.9
1,591,542	-		GFF1562	0.70	-0.0
1,591,553	+		GFF1562	0.73	-0.4
1,591,586	-		GFF1562	0.82	-0.6
1,591,587	+		GFF1562	0.83	-0.3
1,591,611	+		GFF1562	0.89	-0.5
1,591,616	+				+0.9
1,591,616	+				+0.0
1,591,616	+				+0.3
1,591,616	+				-1.5
1,591,624	-				-1.1
1,591,624	-				-0.1
1,591,631	+				+0.1
1,591,636	+				-1.1
1,591,645	-				+0.4
1,591,668	-				+0.4
1,591,682	-		GFF1563	0.15	-0.8
1,591,693	+		GFF1563	0.20	+0.2
1,591,693	+		GFF1563	0.20	-0.4
1,591,701	-		GFF1563	0.23	+0.1
1,591,701	-		GFF1563	0.23	-0.4
1,591,701	-		GFF1563	0.23	+0.5
1,591,701	-		GFF1563	0.23	-1.9
1,591,711	-		GFF1563	0.27	-0.3
1,591,711	-		GFF1563	0.27	-1.4
1,591,807	+		GFF1563	0.67	+0.1
1,591,824	+		GFF1563	0.74	-1.1
1,591,846	+		GFF1563	0.83	-0.1
1,591,911	+				+0.2
1,591,926	+				-0.3
1,591,931	+				-1.5
1,591,931	+				+0.9
1,591,932	+				+0.1
1,591,932	+				-0.4
1,591,932	+				+0.3
1,591,932	+				-0.6
1,591,934	-				-0.2
1,591,936	+				-0.0
1,591,936	+				-0.2
1,591,939	-				-0.0
1,591,939	-				-1.8
1,591,940	-				+0.4
1,591,940	-				+0.1
1,591,940	-				+0.2
1,591,940	-				-0.8
1,591,975	-				-1.0
1,592,008	+				-1.1
1,592,056	+				+1.0
1,592,074	+				+0.1
1,592,109	-		GFF1564	0.11	-0.2
1,592,148	+		GFF1564	0.15	-1.5
1,592,162	-		GFF1564	0.17	-0.4
1,592,167	-		GFF1564	0.17	+0.5
1,592,179	-		GFF1564	0.19	-0.1
1,592,268	+		GFF1564	0.28	+0.1
1,592,268	+		GFF1564	0.28	+1.1
1,592,268	+		GFF1564	0.28	+0.2
1,592,276	-		GFF1564	0.29	+0.3
1,592,276	-		GFF1564	0.29	-0.5
1,592,322	+		GFF1564	0.34	+0.1
1,592,344	+		GFF1564	0.36	-0.1
1,592,352	-		GFF1564	0.37	-0.8
1,592,364	+		GFF1564	0.38	+0.5
1,592,393	+		GFF1564	0.42	-1.9
1,592,393	+		GFF1564	0.42	+0.6
1,592,401	-		GFF1564	0.42	-0.3
1,592,401	-		GFF1564	0.42	-0.4
1,592,401	-		GFF1564	0.42	+0.9
1,592,401	-		GFF1564	0.42	-1.1
1,592,401	-		GFF1564	0.42	-1.1
1,592,401	-		GFF1564	0.42	-0.9
1,592,401	-		GFF1564	0.42	+0.1
1,592,401	-		GFF1564	0.42	-0.4
1,592,401	-		GFF1564	0.42	-0.0
1,592,408	+		GFF1564	0.43	+0.7
1,592,408	-		GFF1564	0.43	-0.6
1,592,416	-		GFF1564	0.44	-0.3
1,592,447	+		GFF1564	0.47	+0.6
1,592,448	+		GFF1564	0.48	-0.6
1,592,456	-		GFF1564	0.48	+0.8
1,592,456	-		GFF1564	0.48	-0.3
1,592,456	-		GFF1564	0.48	-1.9
1,592,468	+		GFF1564	0.50	-1.6
1,592,470	-		GFF1564	0.50	-2.2
1,592,470	-		GFF1564	0.50	-0.9
1,592,470	-		GFF1564	0.50	+1.7
1,592,487	+		GFF1564	0.52	-0.4
1,592,508	+		GFF1564	0.54	+0.4
1,592,560	+		GFF1564	0.60	-0.4
1,592,561	-		GFF1564	0.60	-0.6
1,592,569	-		GFF1564	0.61	-0.7
1,592,585	-		GFF1564	0.62	-0.1
1,592,598	+		GFF1564	0.64	-0.9
1,592,603	+		GFF1564	0.64	+1.0
1,592,603	+		GFF1564	0.64	+0.0
1,592,603	+		GFF1564	0.64	+0.1
1,592,604	+		GFF1564	0.64	-1.1
1,592,606	-		GFF1564	0.65	+0.2
1,592,610	+		GFF1564	0.65	+0.2
1,592,616	-		GFF1564	0.66	+0.4
1,592,620	+		GFF1564	0.66	-0.1
1,592,628	-		GFF1564	0.67	+0.4
1,592,628	-		GFF1564	0.67	-0.2
1,592,649	+		GFF1564	0.69	+0.6
1,592,649	+		GFF1564	0.69	-1.1
1,592,649	+		GFF1564	0.69	-0.4
1,592,649	+		GFF1564	0.69	-1.9
1,592,649	+		GFF1564	0.69	-0.1
1,592,656	-		GFF1564	0.70	-0.1
1,592,657	-		GFF1564	0.70	-0.7
1,592,657	-		GFF1564	0.70	-0.1
1,592,657	-		GFF1564	0.70	+0.0
1,592,659	+		GFF1564	0.70	+0.9
1,592,659	+		GFF1564	0.70	-0.2
1,592,659	+		GFF1564	0.70	-0.4
1,592,659	+		GFF1564	0.70	+0.5
1,592,659	+		GFF1564	0.70	-0.2
1,592,659	+		GFF1564	0.70	+1.7
1,592,659	+		GFF1564	0.70	+0.8
1,592,667	-		GFF1564	0.71	-1.3
1,592,667	-		GFF1564	0.71	+1.3
1,592,711	+		GFF1564	0.76	-0.4
1,592,711	-		GFF1564	0.76	-0.4
1,592,724	-		GFF1564	0.77	-1.0
1,592,730	-		GFF1564	0.78	-2.0
1,592,742	+		GFF1564	0.79	+0.5
1,592,742	+		GFF1564	0.79	+0.9
1,592,742	+		GFF1564	0.79	+0.1
1,592,742	+		GFF1564	0.79	-0.5
1,592,742	+		GFF1564	0.79	-1.4
1,592,760	-		GFF1564	0.81	+1.1
1,592,768	+		GFF1564	0.82	+0.5
1,592,787	+		GFF1564	0.84	-1.0
1,592,794	-		GFF1564	0.85	-1.1
1,592,796	-		GFF1564	0.85	+0.4
1,592,797	+		GFF1564	0.85	-0.5
1,592,801	-		GFF1564	0.85	+1.3
1,592,819	-		GFF1564	0.87	-1.9
1,592,823	-		GFF1564	0.88	-0.9
1,592,832	+		GFF1564	0.89	-0.7
1,592,896	+				-0.7
1,592,918	-				-1.2
1,592,937	-				-0.2
1,592,940	+				-0.1
1,592,952	+				-0.4
1,592,973	+				-2.7
1,592,978	+				+0.5
1,592,978	+				-0.4
1,592,979	+				-1.0
1,592,979	+				-1.0
1,592,986	+				-2.5
1,592,986	+				+0.6
1,592,987	+				-0.2
1,592,994	-				-0.2
1,592,994	-				+0.4
1,593,002	+				+0.9
1,593,004	-				-2.0
1,593,048	+				-0.5
1,593,056	-				-0.9
1,593,076	+				+0.7
1,593,085	-				-0.5
1,593,104	-				-1.7
1,593,109	+				+0.2
1,593,161	+		GFF1565	0.12	-1.3
1,593,169	-		GFF1565	0.13	-0.5
1,593,169	-		GFF1565	0.13	-1.0
1,593,171	+		GFF1565	0.13	-0.8
1,593,178	+		GFF1565	0.13	+0.8
1,593,184	+		GFF1565	0.14	+0.5
1,593,184	+		GFF1565	0.14	-0.1
1,593,184	+		GFF1565	0.14	-2.0
1,593,184	+		GFF1565	0.14	+1.0
1,593,189	+		GFF1565	0.14	-1.1
1,593,189	+		GFF1565	0.14	+0.6
1,593,189	+		GFF1565	0.14	-0.8
1,593,197	-		GFF1565	0.15	+0.7
1,593,197	-		GFF1565	0.15	-0.0
1,593,197	-		GFF1565	0.15	-0.3
1,593,242	-		GFF1565	0.18	-1.8
1,593,258	-		GFF1565	0.19	-1.1
1,593,260	+		GFF1565	0.19	+0.3
1,593,260	+		GFF1565	0.19	+1.2
1,593,268	-		GFF1565	0.20	-0.1
1,593,270	+		GFF1565	0.20	-1.1
1,593,276	-		GFF1565	0.21	+0.2
1,593,282	-		GFF1565	0.21	+0.4
1,593,305	+		GFF1565	0.23	+1.2
1,593,316	+		GFF1565	0.23	+0.9
1,593,316	+		GFF1565	0.23	+0.7
1,593,324	-		GFF1565	0.24	-1.9
1,593,324	-		GFF1565	0.24	+0.2
1,593,352	+		GFF1565	0.26	-0.9
1,593,357	+		GFF1565	0.26	-0.7
1,593,357	+		GFF1565	0.26	+0.8
1,593,360	-		GFF1565	0.27	-0.2
1,593,364	+		GFF1565	0.27	-0.9
1,593,364	+		GFF1565	0.27	-1.6
1,593,412	+		GFF1565	0.30	+0.6
1,593,417	+		GFF1565	0.31	-1.3
1,593,420	-		GFF1565	0.31	-0.8
1,593,425	-		GFF1565	0.31	+0.4
1,593,433	+		GFF1565	0.32	+0.1
1,593,444	+		GFF1565	0.33	-0.8
1,593,446	+		GFF1565	0.33	-0.9
1,593,454	-		GFF1565	0.34	-0.5
1,593,462	+		GFF1565	0.34	+0.6
1,593,462	+		GFF1565	0.34	-1.6
1,593,470	-		GFF1565	0.35	+0.9
1,593,485	-		GFF1565	0.36	+1.0
1,593,486	+		GFF1565	0.36	-0.5
1,593,498	+		GFF1565	0.37	-0.5
1,593,532	-		GFF1565	0.39	-1.3
1,593,534	+		GFF1565	0.39	+0.2
1,593,534	+		GFF1565	0.39	+0.3
1,593,534	+		GFF1565	0.39	-1.9
1,593,537	-		GFF1565	0.40	-1.7
1,593,537	-		GFF1565	0.40	+0.4
1,593,537	-		GFF1565	0.40	-0.4
1,593,550	+		GFF1565	0.41	-0.9
1,593,558	-		GFF1565	0.41	+0.1
1,593,558	-		GFF1565	0.41	-0.6
1,593,559	+		GFF1565	0.41	+0.7
1,593,574	-		GFF1565	0.42	-0.7
1,593,592	+		GFF1565	0.44	-0.4
1,593,602	+		GFF1565	0.44	-1.7
1,593,602	+		GFF1565	0.44	+0.3
1,593,604	+		GFF1565	0.44	-0.8
1,593,610	-		GFF1565	0.45	+0.8
1,593,610	-		GFF1565	0.45	+0.4
1,593,610	-		GFF1565	0.45	-0.5
1,593,612	-		GFF1565	0.45	-0.1
1,593,617	+		GFF1565	0.45	-0.3
1,593,627	-		GFF1565	0.46	-1.3
1,593,632	-		GFF1565	0.47	-1.7
1,593,634	+		GFF1565	0.47	-1.1
1,593,642	-		GFF1565	0.47	-0.4
1,593,642	-		GFF1565	0.47	+2.2
1,593,642	-		GFF1565	0.47	+0.1
1,593,642	-		GFF1565	0.47	-1.8
1,593,683	+		GFF1565	0.50	-0.2
1,593,683	+		GFF1565	0.50	+0.2
1,593,683	+		GFF1565	0.50	+0.3
1,593,691	-		GFF1565	0.51	-0.0
1,593,700	+		GFF1565	0.51	-2.1
1,593,712	+		GFF1565	0.52	-0.6
1,593,715	-		GFF1565	0.53	-0.1
1,593,717	+		GFF1565	0.53	-0.9
1,593,725	-		GFF1565	0.53	-1.4
1,593,725	-		GFF1565	0.53	-1.5
1,593,725	-		GFF1565	0.53	+0.5
1,593,725	-		GFF1565	0.53	+0.3
1,593,754	+		GFF1565	0.55	-0.3
1,593,754	+		GFF1565	0.55	-1.4
1,593,762	-		GFF1565	0.56	-0.6
1,593,762	-		GFF1565	0.56	-0.4
1,593,762	-		GFF1565	0.56	+0.3
1,593,762	-		GFF1565	0.56	+0.6
1,593,768	+		GFF1565	0.56	+1.0
1,593,770	+		GFF1565	0.57	+0.0
1,593,770	+		GFF1565	0.57	-2.5
1,593,778	-		GFF1565	0.57	-1.0
1,593,778	-		GFF1565	0.57	+0.0
1,593,778	-		GFF1565	0.57	-1.5
1,593,830	-		GFF1565	0.61	+0.1
1,593,854	+		GFF1565	0.63	-2.6
1,593,856	+		GFF1565	0.63	+0.8
1,593,862	-		GFF1565	0.63	-2.1
1,593,874	+		GFF1565	0.64	-1.7
1,593,884	+		GFF1565	0.65	-0.9
1,593,884	+		GFF1565	0.65	-0.7
1,593,892	-		GFF1565	0.65	+1.0