Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF147 and GFF148 are separated by 17 nucleotides GFF148 and GFF149 are separated by 183 nucleotides GFF149 and GFF150 are separated by 34 nucleotides GFF150 and GFF151 are separated by 142 nucleotides GFF151 and GFF152 are separated by 172 nucleotides
GFF147 - ATP-dependent hsl protease ATP-binding subunit HslU, at 143,031 to 144,332
GFF147
GFF148 - ATP-dependent protease subunit HslV (EC 3.4.25.2), at 144,350 to 144,916
GFF148
GFF149 - hypothetical protein, at 145,100 to 145,285
GFF149
GFF150 - Entericidin A/B family protein, at 145,320 to 145,448
GFF150
GFF151 - tRNA-Val-CAC, at 145,591 to 145,665
GFF151
GFF152 - Efflux ABC transporter, permease protein, at 145,838 to 147,091
GFF152
Position (kb) 145
146 Strain fitness (log2 ratio) -2
-1
0
1
2 at 144.495 kb on - strand, within GFF148 at 144.530 kb on - strand, within GFF148 at 144.532 kb on - strand, within GFF148 at 144.567 kb on - strand, within GFF148 at 144.641 kb on - strand, within GFF148 at 144.685 kb on - strand, within GFF148 at 144.717 kb on - strand, within GFF148 at 144.717 kb on - strand, within GFF148 at 144.717 kb on - strand, within GFF148 at 144.717 kb on - strand, within GFF148 at 144.717 kb on - strand, within GFF148 at 144.724 kb on - strand, within GFF148 at 144.775 kb on - strand, within GFF148 at 144.784 kb on + strand, within GFF148 at 144.784 kb on + strand, within GFF148 at 144.910 kb on - strand at 144.910 kb on - strand at 144.946 kb on - strand at 145.058 kb on - strand at 145.104 kb on + strand at 145.104 kb on - strand at 145.104 kb on - strand at 145.104 kb on - strand at 145.104 kb on - strand at 145.111 kb on + strand at 145.112 kb on - strand at 145.142 kb on + strand, within GFF149 at 145.153 kb on + strand, within GFF149 at 145.164 kb on + strand, within GFF149 at 145.187 kb on + strand, within GFF149 at 145.187 kb on + strand, within GFF149 at 145.192 kb on + strand, within GFF149 at 145.200 kb on + strand, within GFF149 at 145.231 kb on + strand, within GFF149 at 145.247 kb on - strand, within GFF149 at 145.247 kb on - strand, within GFF149 at 145.247 kb on - strand, within GFF149 at 145.247 kb on - strand, within GFF149 at 145.298 kb on - strand at 145.306 kb on - strand at 145.382 kb on - strand, within GFF150 at 145.384 kb on + strand, within GFF150 at 145.386 kb on + strand, within GFF150 at 145.392 kb on - strand, within GFF150 at 145.465 kb on + strand at 145.470 kb on + strand at 145.470 kb on + strand at 145.470 kb on + strand at 145.473 kb on - strand at 145.473 kb on - strand at 145.475 kb on + strand at 145.478 kb on - strand at 145.480 kb on + strand at 145.480 kb on + strand at 145.485 kb on + strand at 145.488 kb on - strand at 145.488 kb on - strand at 145.488 kb on - strand at 145.488 kb on - strand at 145.488 kb on - strand at 145.488 kb on - strand at 145.493 kb on - strand at 145.493 kb on - strand at 145.507 kb on + strand at 145.515 kb on - strand at 145.515 kb on - strand at 145.579 kb on + strand at 145.582 kb on + strand at 145.731 kb on + strand at 145.736 kb on + strand at 145.736 kb on + strand at 145.736 kb on + strand at 145.739 kb on - strand at 145.739 kb on - strand at 145.742 kb on - strand at 145.744 kb on - strand at 145.744 kb on - strand at 145.744 kb on - strand at 145.757 kb on - strand at 145.841 kb on - strand at 145.922 kb on + strand at 145.935 kb on - strand at 145.939 kb on - strand at 145.959 kb on - strand at 145.991 kb on - strand, within GFF152 at 146.016 kb on - strand, within GFF152 at 146.032 kb on - strand, within GFF152 at 146.052 kb on + strand, within GFF152 at 146.159 kb on + strand, within GFF152 at 146.159 kb on + strand, within GFF152 at 146.164 kb on + strand, within GFF152 at 146.231 kb on + strand, within GFF152 at 146.231 kb on + strand, within GFF152 at 146.231 kb on + strand, within GFF152 at 146.241 kb on + strand, within GFF152 at 146.262 kb on + strand, within GFF152 at 146.262 kb on + strand, within GFF152 at 146.264 kb on - strand, within GFF152 at 146.268 kb on - strand, within GFF152 at 146.272 kb on + strand, within GFF152 at 146.284 kb on + strand, within GFF152 at 146.326 kb on - strand, within GFF152 at 146.345 kb on - strand, within GFF152 at 146.345 kb on - strand, within GFF152 at 146.345 kb on - strand, within GFF152 at 146.346 kb on - strand, within GFF152 at 146.348 kb on - strand, within GFF152 at 146.358 kb on - strand, within GFF152 at 146.388 kb on + strand, within GFF152 at 146.408 kb on - strand, within GFF152 at 146.411 kb on - strand, within GFF152
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 144,495 - GFF148 0.26 -0.6 144,530 - GFF148 0.32 +0.4 144,532 - GFF148 0.32 +0.9 144,567 - GFF148 0.38 -1.5 144,641 - GFF148 0.51 +0.2 144,685 - GFF148 0.59 -0.3 144,717 - GFF148 0.65 -0.8 144,717 - GFF148 0.65 +2.2 144,717 - GFF148 0.65 -0.2 144,717 - GFF148 0.65 +0.3 144,717 - GFF148 0.65 -1.1 144,724 - GFF148 0.66 -1.3 144,775 - GFF148 0.75 -0.8 144,784 + GFF148 0.77 -0.6 144,784 + GFF148 0.77 -0.6 144,910 - +0.6 144,910 - +0.4 144,946 - +1.4 145,058 - -0.5 145,104 + -0.8 145,104 - +0.5 145,104 - +0.7 145,104 - +2.0 145,104 - +0.8 145,111 + +1.6 145,112 - -1.5 145,142 + GFF149 0.23 -0.5 145,153 + GFF149 0.28 +0.1 145,164 + GFF149 0.34 +0.0 145,187 + GFF149 0.47 -0.2 145,187 + GFF149 0.47 -0.2 145,192 + GFF149 0.49 +0.3 145,200 + GFF149 0.54 -0.2 145,231 + GFF149 0.70 -0.3 145,247 - GFF149 0.79 -0.8 145,247 - GFF149 0.79 -0.6 145,247 - GFF149 0.79 +0.8 145,247 - GFF149 0.79 +0.3 145,298 - -1.6 145,306 - -0.8 145,382 - GFF150 0.48 -0.9 145,384 + GFF150 0.50 +0.3 145,386 + GFF150 0.51 -0.9 145,392 - GFF150 0.56 -1.5 145,465 + +1.1 145,470 + +0.3 145,470 + -0.9 145,470 + +0.5 145,473 - +0.0 145,473 - +1.1 145,475 + +0.0 145,478 - +0.0 145,480 + -1.2 145,480 + -1.6 145,485 + +1.1 145,488 - +1.0 145,488 - +1.7 145,488 - +0.1 145,488 - -0.1 145,488 - +1.6 145,488 - +0.3 145,493 - -0.1 145,493 - -1.7 145,507 + -0.2 145,515 - +0.2 145,515 - +0.2 145,579 + -0.4 145,582 + -0.8 145,731 + -0.1 145,736 + -1.4 145,736 + -0.6 145,736 + +0.6 145,739 - +2.4 145,739 - -1.6 145,742 - -0.3 145,744 - +0.3 145,744 - -1.8 145,744 - -0.7 145,757 - +0.3 145,841 - -2.4 145,922 + -1.8 145,935 - +0.4 145,939 - +0.2 145,959 - -1.1 145,991 - GFF152 0.12 -1.6 146,016 - GFF152 0.14 +0.4 146,032 - GFF152 0.15 -0.7 146,052 + GFF152 0.17 +0.4 146,159 + GFF152 0.26 -0.3 146,159 + GFF152 0.26 -0.6 146,164 + GFF152 0.26 -1.8 146,231 + GFF152 0.31 +0.8 146,231 + GFF152 0.31 +1.6 146,231 + GFF152 0.31 -1.9 146,241 + GFF152 0.32 -0.6 146,262 + GFF152 0.34 +0.2 146,262 + GFF152 0.34 +1.0 146,264 - GFF152 0.34 -1.0 146,268 - GFF152 0.34 +0.2 146,272 + GFF152 0.35 -1.6 146,284 + GFF152 0.36 -0.4 146,326 - GFF152 0.39 +1.4 146,345 - GFF152 0.40 -0.3 146,345 - GFF152 0.40 -0.3 146,345 - GFF152 0.40 -1.8 146,346 - GFF152 0.41 +0.7 146,348 - GFF152 0.41 -1.6 146,358 - GFF152 0.41 -2.4 146,388 + GFF152 0.44 -0.8 146,408 - GFF152 0.45 -1.7 146,411 - GFF152 0.46 +0.5
Or see this region's nucleotide sequence