Strain Fitness in Sphingobium sp. HT1-2 around GFF1495

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,520,376	+		GFF1493	0.87	+1.2
1,520,387	+		GFF1493	0.87	-1.9
1,520,395	+		GFF1493	0.88	-0.1
1,520,402	-		GFF1493	0.88	+1.2
1,520,403	-		GFF1493	0.88	-0.0
1,520,477	+				+0.9
1,520,485	-				+0.9
1,520,489	+				+0.1
1,520,490	+				+0.7
1,520,495	-				-0.8
1,520,497	-				-0.2
1,520,497	-				-2.0
1,520,506	-				-0.6
1,520,516	-				-0.0
1,520,543	+				-0.1
1,520,543	+				-0.2
1,520,543	+				-2.1
1,520,543	+				+1.8
1,520,543	+				-0.7
1,520,543	+				+0.7
1,520,543	+				+0.9
1,520,543	+				+0.1
1,520,543	+				+0.3
1,520,543	+				+0.7
1,520,543	+				-1.8
1,520,543	+				-1.4
1,520,543	-				-0.6
1,520,551	-				-0.5
1,520,551	-				-0.5
1,520,551	-				-0.0
1,520,592	+				-1.1
1,520,594	-				-0.2
1,520,594	-				-0.2
1,520,599	+				-1.4
1,520,605	+				-0.3
1,520,620	+				-1.2
1,520,701	+		GFF1494	0.12	+1.3
1,520,701	+		GFF1494	0.12	+0.7
1,520,716	+		GFF1494	0.14	-0.2
1,520,716	+		GFF1494	0.14	-0.4
1,520,724	-		GFF1494	0.15	-1.3
1,520,724	-		GFF1494	0.15	-1.3
1,520,724	-		GFF1494	0.15	-1.5
1,520,724	-		GFF1494	0.15	-0.7
1,520,762	-		GFF1494	0.20	+0.4
1,520,762	-		GFF1494	0.20	+0.2
1,520,774	+		GFF1494	0.22	+1.7
1,520,774	+		GFF1494	0.22	+0.7
1,520,774	+		GFF1494	0.22	+0.1
1,520,782	-		GFF1494	0.23	+0.1
1,520,782	-		GFF1494	0.23	+0.8
1,520,798	-		GFF1494	0.25	+1.1
1,520,829	-		GFF1494	0.29	+0.9
1,520,839	+		GFF1494	0.31	+1.0
1,520,839	+		GFF1494	0.31	-0.6
1,520,839	+		GFF1494	0.31	+0.1
1,520,839	+		GFF1494	0.31	+0.3
1,520,839	-		GFF1494	0.31	-1.9
1,520,847	-		GFF1494	0.32	+1.5
1,520,847	-		GFF1494	0.32	+2.1
1,520,847	-		GFF1494	0.32	-2.9
1,520,847	-		GFF1494	0.32	+0.2
1,520,847	-		GFF1494	0.32	+0.7
1,520,847	-		GFF1494	0.32	+0.8
1,520,847	-		GFF1494	0.32	-1.3
1,520,847	-		GFF1494	0.32	-0.5
1,520,847	-		GFF1494	0.32	+0.2
1,520,859	+		GFF1494	0.33	+0.4
1,520,870	+		GFF1494	0.35	+0.8
1,520,890	-		GFF1494	0.38	-0.5
1,520,890	-		GFF1494	0.38	-1.1
1,520,923	-		GFF1494	0.42	-0.2
1,520,938	-		GFF1494	0.44	+0.8
1,520,973	+		GFF1494	0.49	+1.0
1,520,977	+		GFF1494	0.49	-1.0
1,521,004	-		GFF1494	0.53	+0.7
1,521,006	+		GFF1494	0.53	+0.6
1,521,014	-		GFF1494	0.54	+2.0
1,521,019	-		GFF1494	0.55	-1.3
1,521,038	-		GFF1494	0.57	-2.0
1,521,039	-		GFF1494	0.58	-1.5
1,521,040	-		GFF1494	0.58	-1.0
1,521,064	+		GFF1494	0.61	+0.4
1,521,067	-		GFF1494	0.61	-0.1
1,521,069	+		GFF1494	0.62	-1.4
1,521,071	+		GFF1494	0.62	+0.3
1,521,071	+		GFF1494	0.62	+0.2
1,521,071	+		GFF1494	0.62	-1.9
1,521,079	-		GFF1494	0.63	-1.3
1,521,087	-		GFF1494	0.64	+0.1
1,521,105	+		GFF1494	0.66	+0.7
1,521,110	+		GFF1494	0.67	-0.0
1,521,113	-		GFF1494	0.67	-0.6
1,521,113	-		GFF1494	0.67	-0.2
1,521,113	-		GFF1494	0.67	+0.5
1,521,113	-		GFF1494	0.67	-1.1
1,521,115	+		GFF1494	0.68	-2.0
1,521,135	-		GFF1494	0.70	-0.1
1,521,135	-		GFF1494	0.70	-0.0
1,521,139	+		GFF1494	0.71	-0.6
1,521,139	+		GFF1494	0.71	+1.4
1,521,147	-		GFF1494	0.72	+1.3
1,521,147	-		GFF1494	0.72	-0.9
1,521,149	+		GFF1494	0.72	+0.5
1,521,151	+		GFF1494	0.73	+0.4
1,521,151	+		GFF1494	0.73	-2.3
1,521,151	+		GFF1494	0.73	+1.1
1,521,151	+		GFF1494	0.73	+0.6
1,521,154	-		GFF1494	0.73	+0.2
1,521,156	-		GFF1494	0.73	-0.1
1,521,175	-		GFF1494	0.76	+0.4
1,521,175	-		GFF1494	0.76	+1.0
1,521,175	-		GFF1494	0.76	+0.4
1,521,184	+		GFF1494	0.77	-0.5
1,521,216	+		GFF1494	0.81	+0.2
1,521,291	+				-1.1
1,521,291	+				-1.3
1,521,308	+				+1.0
1,521,308	+				+0.0
1,521,308	+				-0.6
1,521,316	-				+0.8
1,521,319	+				+0.5
1,521,319	+				-0.8
1,521,321	-				-1.1
1,521,351	-				+1.1
1,521,366	-				+1.1
1,521,395	+				-1.7
1,521,402	-				-1.4
1,521,423	+				-0.3
1,521,423	+				-0.2
1,521,425	+				+0.2
1,521,431	-				+0.8
1,521,431	-				+0.4
1,521,433	-				+0.6
1,521,470	+		GFF1495	0.10	-1.6
1,521,489	+		GFF1495	0.12	-0.1
1,521,497	-		GFF1495	0.13	-0.1
1,521,551	+		GFF1495	0.17	-0.0
1,521,551	+		GFF1495	0.17	-0.3
1,521,554	-		GFF1495	0.18	-0.8
1,521,559	-		GFF1495	0.18	+0.6
1,521,559	-		GFF1495	0.18	+1.1
1,521,572	+		GFF1495	0.19	-0.2
1,521,578	+		GFF1495	0.20	-0.0
1,521,585	-		GFF1495	0.20	-0.3
1,521,586	-		GFF1495	0.21	+1.0
1,521,595	+		GFF1495	0.21	+1.1
1,521,603	-		GFF1495	0.22	-2.0
1,521,603	-		GFF1495	0.22	+1.3
1,521,609	+		GFF1495	0.23	+2.1
1,521,617	-		GFF1495	0.23	-2.2
1,521,617	-		GFF1495	0.23	+0.5
1,521,622	-		GFF1495	0.24	-0.6
1,521,659	+		GFF1495	0.27	+0.8
1,521,659	+		GFF1495	0.27	+0.9
1,521,667	-		GFF1495	0.28	-2.3
1,521,687	+		GFF1495	0.29	+0.1
1,521,747	+		GFF1495	0.35	-2.7
1,521,754	-		GFF1495	0.35	-0.0
1,521,767	+		GFF1495	0.36	+1.1
1,521,784	+		GFF1495	0.38	+0.1
1,521,795	+		GFF1495	0.39	-0.7
1,521,798	-		GFF1495	0.39	+1.4
1,521,802	+		GFF1495	0.39	+0.7
1,521,802	+		GFF1495	0.39	+0.2
1,521,810	-		GFF1495	0.40	-1.3
1,521,810	-		GFF1495	0.40	+0.7
1,521,810	-		GFF1495	0.40	+0.1
1,521,810	-		GFF1495	0.40	+1.2
1,521,832	+		GFF1495	0.42	-1.1
1,521,833	+		GFF1495	0.42	+0.4
1,521,840	-		GFF1495	0.43	-1.1
1,521,862	-		GFF1495	0.45	-0.2
1,521,884	+		GFF1495	0.47	+0.4
1,521,891	-		GFF1495	0.47	+0.5
1,521,968	+		GFF1495	0.54	+0.4
1,521,971	-		GFF1495	0.54	-0.3
1,521,984	+		GFF1495	0.55	+0.3
1,521,995	+		GFF1495	0.56	-0.9
1,522,000	+		GFF1495	0.57	+1.5
1,522,003	-		GFF1495	0.57	+0.6
1,522,075	+		GFF1495	0.63	+0.2
1,522,081	-		GFF1495	0.64	+0.2
1,522,087	+		GFF1495	0.64	+1.2
1,522,088	+		GFF1495	0.65	+0.6
1,522,109	+		GFF1495	0.66	-1.2
1,522,117	-		GFF1495	0.67	+0.4
1,522,121	+		GFF1495	0.67	+0.6
1,522,121	+		GFF1495	0.67	+0.7
1,522,121	+		GFF1495	0.67	-0.2
1,522,121	+		GFF1495	0.67	-0.8
1,522,121	+		GFF1495	0.67	+0.3
1,522,121	+		GFF1495	0.67	+1.7
1,522,121	+		GFF1495	0.67	+0.1
1,522,121	+		GFF1495	0.67	-1.5
1,522,121	+		GFF1495	0.67	+0.4
1,522,121	+		GFF1495	0.67	-0.8
1,522,121	+		GFF1495	0.67	-1.2
1,522,121	+		GFF1495	0.67	+0.2
1,522,121	+		GFF1495	0.67	+1.0
1,522,121	+		GFF1495	0.67	-0.8
1,522,121	+		GFF1495	0.67	+0.9
1,522,121	+		GFF1495	0.67	+1.0
1,522,121	+		GFF1495	0.67	-0.6
1,522,121	+		GFF1495	0.67	+1.5
1,522,121	+		GFF1495	0.67	+0.3
1,522,126	+		GFF1495	0.68	-0.0
1,522,129	-		GFF1495	0.68	+0.7
1,522,129	-		GFF1495	0.68	-0.8
1,522,129	-		GFF1495	0.68	-0.7
1,522,129	-		GFF1495	0.68	-2.8
1,522,129	-		GFF1495	0.68	+0.2
1,522,129	-		GFF1495	0.68	+0.5
1,522,129	-		GFF1495	0.68	-0.3
1,522,129	-		GFF1495	0.68	-0.5
1,522,129	-		GFF1495	0.68	-0.1
1,522,129	-		GFF1495	0.68	-1.7
1,522,129	-		GFF1495	0.68	-0.1
1,522,129	-		GFF1495	0.68	+0.1
1,522,129	-		GFF1495	0.68	-1.9
1,522,129	-		GFF1495	0.68	+1.1
1,522,129	-		GFF1495	0.68	-0.8
1,522,129	-		GFF1495	0.68	+1.0
1,522,129	-		GFF1495	0.68	-0.2
1,522,129	-		GFF1495	0.68	-0.3
1,522,129	-		GFF1495	0.68	-0.4
1,522,129	-		GFF1495	0.68	-0.1
1,522,142	+		GFF1495	0.69	-1.8
1,522,150	-		GFF1495	0.70	+1.4
1,522,190	+		GFF1495	0.74	-0.2
1,522,194	+		GFF1495	0.74	+0.1
1,522,201	+		GFF1495	0.74	+0.2
1,522,202	-		GFF1495	0.75	-0.6
1,522,202	-		GFF1495	0.75	+0.1
1,522,202	-		GFF1495	0.75	-1.1
1,522,206	+		GFF1495	0.75	-1.5
1,522,214	-		GFF1495	0.76	+0.2
1,522,237	-		GFF1495	0.78	+1.4
1,522,237	-		GFF1495	0.78	+1.2
1,522,241	+		GFF1495	0.78	+0.6
1,522,246	+		GFF1495	0.78	-0.3
1,522,246	+		GFF1495	0.78	+1.7
1,522,246	+		GFF1495	0.78	-0.0
1,522,246	+		GFF1495	0.78	-0.1
1,522,246	+		GFF1495	0.78	-1.3
1,522,246	+		GFF1495	0.78	-1.0
1,522,249	-		GFF1495	0.79	-0.2
1,522,251	+		GFF1495	0.79	+0.1
1,522,251	+		GFF1495	0.79	+2.1
1,522,251	+		GFF1495	0.79	+0.8
1,522,254	-		GFF1495	0.79	+0.7
1,522,254	-		GFF1495	0.79	+0.2
1,522,254	-		GFF1495	0.79	+0.2
1,522,254	-		GFF1495	0.79	-0.7
1,522,254	-		GFF1495	0.79	+0.1
1,522,254	-		GFF1495	0.79	+0.1
1,522,254	-		GFF1495	0.79	+0.8
1,522,254	-		GFF1495	0.79	+0.2
1,522,273	-		GFF1495	0.81	-0.0
1,522,288	+		GFF1495	0.82	+1.2
1,522,291	-		GFF1495	0.82	+1.6
1,522,296	-		GFF1495	0.83	+0.5
1,522,306	+		GFF1495	0.84	-2.3
1,522,311	+		GFF1495	0.84	+0.5
1,522,311	+		GFF1495	0.84	-0.0
1,522,311	+		GFF1495	0.84	+0.4
1,522,313	+		GFF1495	0.84	+0.1
1,522,319	-		GFF1495	0.85	+0.9
1,522,319	-		GFF1495	0.85	-2.4
1,522,319	-		GFF1495	0.85	+1.1
1,522,345	+		GFF1495	0.87	+0.7
1,522,346	+		GFF1495	0.87	+1.5
1,522,346	+		GFF1495	0.87	+0.6
1,522,346	+		GFF1495	0.87	+0.3
1,522,346	+		GFF1495	0.87	+0.2
1,522,354	-		GFF1495	0.88	-1.7
1,522,383	+				+1.2
1,522,390	+				-0.3
1,522,399	+				+0.3
1,522,407	-				-1.5
1,522,409	+				-0.4
1,522,412	-				+1.0
1,522,412	-				-0.7
1,522,417	-				-1.2
1,522,422	-				-0.3
1,522,470	+				-0.1
1,522,486	+				-1.3
1,522,492	+				-0.2
1,522,509	-				+1.2