Strain Fitness in Sphingobium sp. HT1-2 around GFF1490

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,513,855	-				+1.1
1,513,969	-				-2.1
1,513,971	+				+0.3
1,514,003	-		GFF1489	0.12	-0.4
1,514,021	-		GFF1489	0.15	-0.7
1,514,051	-		GFF1489	0.18	+0.3
1,514,079	-		GFF1489	0.22	+1.6
1,514,094	-		GFF1489	0.24	-1.9
1,514,096	+		GFF1489	0.24	-1.4
1,514,099	-		GFF1489	0.24	+0.3
1,514,104	-		GFF1489	0.25	+0.4
1,514,104	-		GFF1489	0.25	+0.4
1,514,104	-		GFF1489	0.25	-0.7
1,514,104	-		GFF1489	0.25	-0.7
1,514,115	-		GFF1489	0.26	-0.1
1,514,130	-		GFF1489	0.28	+2.8
1,514,130	-		GFF1489	0.28	-0.4
1,514,130	-		GFF1489	0.28	-0.1
1,514,136	-		GFF1489	0.29	-1.4
1,514,186	+		GFF1489	0.35	-0.6
1,514,186	+		GFF1489	0.35	+0.9
1,514,201	-		GFF1489	0.37	-2.9
1,514,203	+		GFF1489	0.37	-1.7
1,514,240	-		GFF1489	0.41	+1.1
1,514,272	+		GFF1489	0.45	-1.3
1,514,358	+		GFF1489	0.56	-1.2
1,514,412	+		GFF1489	0.62	+0.3
1,514,426	+		GFF1489	0.64	+0.1
1,514,426	-		GFF1489	0.64	-0.4
1,514,468	-		GFF1489	0.69	+0.2
1,514,470	+		GFF1489	0.69	+0.2
1,514,476	+		GFF1489	0.70	+0.4
1,514,543	-		GFF1489	0.78	-1.5
1,514,575	+		GFF1489	0.82	-0.8
1,514,616	+		GFF1489	0.87	+1.1
1,514,618	+		GFF1489	0.88	+0.7
1,514,635	-		GFF1489	0.90	+0.2
1,514,659	+				+0.4
1,514,665	+				-0.6
1,514,670	+				-0.0
1,514,670	+				-0.8
1,514,678	-				-0.1
1,514,714	+				-0.4
1,514,734	-				-0.5
1,514,769	-				-2.2
1,514,770	+				+0.4
1,514,778	-				-0.4
1,514,778	-				+0.4
1,514,824	+				-0.3
1,514,850	+				-2.6
1,514,858	-				-1.7
1,514,867	+				-2.1
1,514,875	-				-2.5
1,514,951	-				+0.2
1,514,962	+				-2.1
1,514,984	+		GFF1490	0.11	-2.2
1,514,992	+		GFF1490	0.12	-0.4
1,515,000	-		GFF1490	0.13	-2.0
1,515,000	-		GFF1490	0.13	-2.1
1,515,033	+		GFF1490	0.15	-2.3
1,515,033	+		GFF1490	0.15	-1.8
1,515,033	+		GFF1490	0.15	-1.0
1,515,033	+		GFF1490	0.15	-2.3
1,515,033	+		GFF1490	0.15	-1.9
1,515,033	+		GFF1490	0.15	-0.7
1,515,033	+		GFF1490	0.15	-0.6
1,515,033	+		GFF1490	0.15	-0.6
1,515,033	+		GFF1490	0.15	-0.9
1,515,033	+		GFF1490	0.15	-1.0
1,515,033	+		GFF1490	0.15	-1.8
1,515,033	+		GFF1490	0.15	-0.6
1,515,033	+		GFF1490	0.15	-1.2
1,515,041	-		GFF1490	0.16	-2.2
1,515,041	-		GFF1490	0.16	-1.8
1,515,041	-		GFF1490	0.16	-2.3
1,515,041	-		GFF1490	0.16	-3.9
1,515,058	-		GFF1490	0.17	-1.0
1,515,064	-		GFF1490	0.18	-2.4
1,515,157	+		GFF1490	0.25	-1.5
1,515,158	+		GFF1490	0.25	+0.0
1,515,165	-		GFF1490	0.26	-0.7
1,515,195	-		GFF1490	0.28	-2.1
1,515,195	-		GFF1490	0.28	-0.4
1,515,198	-		GFF1490	0.28	-1.6
1,515,203	-		GFF1490	0.29	-1.5
1,515,203	-		GFF1490	0.29	-2.4
1,515,209	+		GFF1490	0.29	-1.1
1,515,231	+		GFF1490	0.31	-2.4
1,515,233	+		GFF1490	0.31	-0.1
1,515,236	-		GFF1490	0.31	-2.9
1,515,239	-		GFF1490	0.32	-1.8
1,515,239	-		GFF1490	0.32	-1.8
1,515,241	-		GFF1490	0.32	-2.0
1,515,252	+		GFF1490	0.33	-2.4
1,515,252	+		GFF1490	0.33	-1.6
1,515,260	-		GFF1490	0.33	-2.7
1,515,265	+		GFF1490	0.34	-1.1
1,515,294	+		GFF1490	0.36	-1.5
1,515,299	+		GFF1490	0.37	-1.6
1,515,309	-		GFF1490	0.37	-0.9
1,515,361	+		GFF1490	0.42	-2.4
1,515,369	+		GFF1490	0.42	-0.9
1,515,369	+		GFF1490	0.42	-1.8
1,515,377	-		GFF1490	0.43	-2.1
1,515,377	-		GFF1490	0.43	-1.1
1,515,377	-		GFF1490	0.43	-0.6
1,515,377	-		GFF1490	0.43	-1.1
1,515,403	-		GFF1490	0.45	-1.7
1,515,403	-		GFF1490	0.45	-2.1
1,515,403	-		GFF1490	0.45	-3.6
1,515,419	+		GFF1490	0.46	-0.4
1,515,419	+		GFF1490	0.46	-3.1
1,515,427	-		GFF1490	0.47	-2.5
1,515,429	+		GFF1490	0.47	-2.4
1,515,432	+		GFF1490	0.47	-1.4
1,515,463	-		GFF1490	0.50	-2.4
1,515,509	-		GFF1490	0.53	+0.5
1,515,509	-		GFF1490	0.53	-2.0
1,515,528	+		GFF1490	0.55	-2.1
1,515,528	+		GFF1490	0.55	-1.0
1,515,540	+		GFF1490	0.56	-0.6
1,515,566	-		GFF1490	0.58	+0.4
1,515,579	+		GFF1490	0.59	-1.9
1,515,587	-		GFF1490	0.60	-2.0
1,515,587	-		GFF1490	0.60	-2.3
1,515,602	+		GFF1490	0.61	-3.2
1,515,609	-		GFF1490	0.61	-2.4
1,515,629	+		GFF1490	0.63	-1.3
1,515,637	-		GFF1490	0.64	-2.1
1,515,642	-		GFF1490	0.64	-2.2
1,515,644	+		GFF1490	0.64	-1.6
1,515,646	+		GFF1490	0.64	-2.4
1,515,646	+		GFF1490	0.64	-2.6
1,515,672	-		GFF1490	0.66	-0.7
1,515,691	-		GFF1490	0.68	-3.0
1,515,715	+		GFF1490	0.70	-1.0
1,515,721	+		GFF1490	0.70	-0.6
1,515,721	+		GFF1490	0.70	-2.5
1,515,721	+		GFF1490	0.70	-1.8
1,515,727	+		GFF1490	0.71	+0.4
1,515,727	+		GFF1490	0.71	-1.9
1,515,729	-		GFF1490	0.71	-2.8
1,515,745	+		GFF1490	0.72	+0.4
1,515,786	-		GFF1490	0.76	-0.9
1,515,799	+		GFF1490	0.77	-1.0
1,515,819	-		GFF1490	0.78	-1.7
1,515,819	-		GFF1490	0.78	+0.1
1,515,826	+		GFF1490	0.79	-0.9
1,515,843	+		GFF1490	0.80	-2.1
1,515,843	+		GFF1490	0.80	-1.0
1,515,851	-		GFF1490	0.81	-0.6
1,515,851	-		GFF1490	0.81	-1.4
1,515,851	-		GFF1490	0.81	-2.2
1,515,851	-		GFF1490	0.81	-2.7
1,515,851	-		GFF1490	0.81	-1.3
1,515,875	-		GFF1490	0.83	-1.3
1,515,882	-		GFF1490	0.83	-2.1
1,515,935	+		GFF1490	0.88	-0.9
1,515,953	-		GFF1490	0.89	-1.1
1,515,955	+		GFF1490	0.89	-3.5
1,515,968	+				-1.6
1,515,968	+				-2.4
1,515,976	-				-0.6
1,515,976	-				-1.5
1,515,976	-				-2.4
1,515,982	+				-3.5
1,516,038	-				-0.6
1,516,071	+				-2.9
1,516,071	+				-2.6
1,516,074	-				-2.3
1,516,079	-				-1.1
1,516,079	-				-0.9
1,516,093	-				-0.2
1,516,169	+				-0.2
1,516,185	-				+1.8
1,516,198	-				-1.1
1,516,217	+				-1.3
1,516,225	-				-1.3
1,516,226	-				-2.5
1,516,242	+				+0.1
1,516,247	+				+0.5
1,516,247	+				-0.1
1,516,247	+				-1.5
1,516,255	-				+0.6
1,516,261	-				-0.5
1,516,261	-				-1.6
1,516,272	+				-1.6
1,516,280	-		GFF1491	0.11	-0.6
1,516,296	+		GFF1491	0.12	+0.4
1,516,301	+		GFF1491	0.13	+0.9
1,516,304	-		GFF1491	0.13	-1.9
1,516,304	-		GFF1491	0.13	+0.7
1,516,304	-		GFF1491	0.13	-1.1
1,516,313	+		GFF1491	0.14	-0.8
1,516,314	-		GFF1491	0.14	+0.4
1,516,314	-		GFF1491	0.14	-1.0
1,516,314	-		GFF1491	0.14	+0.2
1,516,329	+		GFF1491	0.16	+1.0
1,516,329	+		GFF1491	0.16	-0.1
1,516,343	+		GFF1491	0.18	+0.0
1,516,371	+		GFF1491	0.21	+1.6
1,516,398	+		GFF1491	0.24	-0.4
1,516,398	+		GFF1491	0.24	-1.4
1,516,409	+		GFF1491	0.25	+0.0
1,516,409	+		GFF1491	0.25	-1.1
1,516,413	+		GFF1491	0.26	-0.9
1,516,460	+		GFF1491	0.31	+0.3
1,516,466	+		GFF1491	0.32	+0.2
1,516,477	-		GFF1491	0.33	-2.4
1,516,477	-		GFF1491	0.33	-0.5
1,516,515	+		GFF1491	0.38	+0.1
1,516,522	+		GFF1491	0.38	+1.0
1,516,522	+		GFF1491	0.38	+0.1
1,516,526	+		GFF1491	0.39	-0.2
1,516,527	+		GFF1491	0.39	+0.4
1,516,527	+		GFF1491	0.39	+0.2
1,516,527	+		GFF1491	0.39	-0.0
1,516,527	+		GFF1491	0.39	+0.8
1,516,527	+		GFF1491	0.39	+1.1
1,516,527	+		GFF1491	0.39	-2.2
1,516,527	+		GFF1491	0.39	+0.1
1,516,527	+		GFF1491	0.39	-0.7
1,516,527	+		GFF1491	0.39	-0.0
1,516,527	+		GFF1491	0.39	-0.7
1,516,527	+		GFF1491	0.39	+0.3
1,516,527	+		GFF1491	0.39	-0.5
1,516,527	+		GFF1491	0.39	+1.0
1,516,527	+		GFF1491	0.39	+0.1
1,516,527	+		GFF1491	0.39	-1.7
1,516,527	+		GFF1491	0.39	+0.5
1,516,527	+		GFF1491	0.39	+0.3
1,516,527	+		GFF1491	0.39	-1.1
1,516,527	+		GFF1491	0.39	-1.1
1,516,530	-		GFF1491	0.39	+1.0
1,516,530	-		GFF1491	0.39	-0.3
1,516,535	-		GFF1491	0.40	+0.3
1,516,535	-		GFF1491	0.40	+0.1
1,516,535	-		GFF1491	0.40	-0.8
1,516,535	-		GFF1491	0.40	-0.1
1,516,535	-		GFF1491	0.40	-0.2
1,516,535	-		GFF1491	0.40	-1.3
1,516,535	-		GFF1491	0.40	-0.7
1,516,535	-		GFF1491	0.40	-0.1
1,516,535	-		GFF1491	0.40	+0.3
1,516,535	-		GFF1491	0.40	+1.6
1,516,535	-		GFF1491	0.40	-0.4
1,516,535	-		GFF1491	0.40	-2.6
1,516,586	+		GFF1491	0.46	-1.0
1,516,641	+		GFF1491	0.52	-1.3
1,516,641	+		GFF1491	0.52	-0.3
1,516,646	+		GFF1491	0.53	-0.8
1,516,646	+		GFF1491	0.53	+1.7
1,516,646	+		GFF1491	0.53	-0.8
1,516,646	+		GFF1491	0.53	-0.8
1,516,646	+		GFF1491	0.53	-0.3
1,516,646	+		GFF1491	0.53	+1.4
1,516,646	+		GFF1491	0.53	-0.8
1,516,646	+		GFF1491	0.53	-0.3
1,516,646	+		GFF1491	0.53	+0.4
1,516,646	+		GFF1491	0.53	+1.1
1,516,646	+		GFF1491	0.53	+0.2
1,516,646	+		GFF1491	0.53	+1.0
1,516,646	+		GFF1491	0.53	+0.9
1,516,646	+		GFF1491	0.53	-1.4
1,516,646	+		GFF1491	0.53	-0.9
1,516,646	+		GFF1491	0.53	-0.6
1,516,646	+		GFF1491	0.53	+0.9
1,516,646	+		GFF1491	0.53	-0.6
1,516,646	+		GFF1491	0.53	-0.4
1,516,646	+		GFF1491	0.53	+0.3
1,516,646	+		GFF1491	0.53	-0.2
1,516,646	+		GFF1491	0.53	-1.0
1,516,646	+		GFF1491	0.53	-1.9
1,516,646	+		GFF1491	0.53	-0.6
1,516,648	+		GFF1491	0.53	-0.1
1,516,649	-		GFF1491	0.53	-1.3
1,516,649	-		GFF1491	0.53	+1.8
1,516,653	+		GFF1491	0.53	+0.0
1,516,654	-		GFF1491	0.54	+0.4
1,516,654	-		GFF1491	0.54	-1.4
1,516,654	-		GFF1491	0.54	+0.2
1,516,654	-		GFF1491	0.54	-0.3
1,516,654	-		GFF1491	0.54	-0.9
1,516,654	-		GFF1491	0.54	-2.2
1,516,654	-		GFF1491	0.54	+0.5
1,516,654	-		GFF1491	0.54	+0.2
1,516,654	-		GFF1491	0.54	-0.9
1,516,654	-		GFF1491	0.54	-0.1
1,516,654	-		GFF1491	0.54	+0.3
1,516,654	-		GFF1491	0.54	-2.3
1,516,654	-		GFF1491	0.54	+0.5
1,516,654	-		GFF1491	0.54	+0.4
1,516,654	-		GFF1491	0.54	-1.0
1,516,654	-		GFF1491	0.54	+1.2
1,516,654	-		GFF1491	0.54	+0.2
1,516,671	-		GFF1491	0.56	-0.3
1,516,684	+		GFF1491	0.57	-0.4
1,516,687	-		GFF1491	0.57	+0.9
1,516,715	+		GFF1491	0.61	-3.0
1,516,739	+		GFF1491	0.63	-0.5
1,516,745	+		GFF1491	0.64	-0.6
1,516,745	+		GFF1491	0.64	-0.1
1,516,759	+		GFF1491	0.66	-0.2
1,516,767	-		GFF1491	0.67	+0.8
1,516,776	+		GFF1491	0.68	-0.6
1,516,821	+		GFF1491	0.73	+0.5
1,516,824	-		GFF1491	0.73	+1.0
1,516,829	-		GFF1491	0.74	-0.3
1,516,847	+		GFF1491	0.76	-1.8
1,516,860	+		GFF1491	0.77	-1.6
1,516,860	+		GFF1491	0.77	-0.8
1,516,860	+		GFF1491	0.77	-0.0
1,516,868	-		GFF1491	0.78	+0.1
1,516,868	-		GFF1491	0.78	-0.6
1,516,887	+		GFF1491	0.80	-1.8
1,516,908	+		GFF1491	0.83	-2.0
1,516,908	+		GFF1491	0.83	+0.1
1,516,916	-		GFF1491	0.84	-1.6
1,516,916	-		GFF1491	0.84	+0.4
1,516,916	-		GFF1491	0.84	-1.1
1,516,937	+		GFF1491	0.86	-0.0
1,516,945	-		GFF1491	0.87	-0.4
1,517,061	+				+0.4
1,517,061	+				+0.4
1,517,089	+				-1.3
1,517,090	+				+0.4