Strain Fitness in Sphingobium sp. HT1-2 around GFF1331

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,357,717	+		GFF1330	0.36	+0.0
1,357,717	+		GFF1330	0.36	-0.1
1,357,719	+		GFF1330	0.36	-0.4
1,357,719	+		GFF1330	0.36	+0.7
1,357,719	+		GFF1330	0.36	-0.1
1,357,725	-		GFF1330	0.36	-0.9
1,357,725	-		GFF1330	0.36	-0.7
1,357,727	-		GFF1330	0.36	-1.2
1,357,727	-		GFF1330	0.36	+0.6
1,357,727	-		GFF1330	0.36	+0.6
1,357,767	+		GFF1330	0.39	-0.7
1,357,772	-		GFF1330	0.40	+1.2
1,357,796	+		GFF1330	0.42	-1.2
1,357,803	+		GFF1330	0.42	-0.6
1,357,820	+		GFF1330	0.43	+0.7
1,357,833	-		GFF1330	0.44	-1.5
1,357,833	-		GFF1330	0.44	+1.8
1,357,833	-		GFF1330	0.44	+0.1
1,357,833	-		GFF1330	0.44	-1.9
1,357,835	-		GFF1330	0.44	-0.8
1,357,845	+		GFF1330	0.45	+0.3
1,357,858	-		GFF1330	0.46	-0.1
1,357,869	-		GFF1330	0.47	+1.6
1,357,888	+		GFF1330	0.48	+0.2
1,357,888	+		GFF1330	0.48	+0.0
1,357,888	+		GFF1330	0.48	+0.1
1,357,888	+		GFF1330	0.48	+0.9
1,357,891	-		GFF1330	0.49	-0.1
1,357,896	-		GFF1330	0.49	+0.3
1,357,896	-		GFF1330	0.49	+0.3
1,357,896	-		GFF1330	0.49	-0.5
1,357,896	-		GFF1330	0.49	-0.5
1,357,905	+		GFF1330	0.50	+1.1
1,357,905	+		GFF1330	0.50	-0.0
1,357,910	+		GFF1330	0.50	-0.9
1,357,910	+		GFF1330	0.50	-0.5
1,357,913	-		GFF1330	0.50	-1.7
1,357,932	+		GFF1330	0.52	-0.1
1,357,934	+		GFF1330	0.52	-0.2
1,357,942	+		GFF1330	0.52	-0.0
1,357,942	+		GFF1330	0.52	-1.0
1,357,944	+		GFF1330	0.53	+1.1
1,357,952	-		GFF1330	0.53	-0.5
1,357,952	-		GFF1330	0.53	+1.3
1,357,952	-		GFF1330	0.53	-1.7
1,357,962	+		GFF1330	0.54	+1.6
1,357,962	-		GFF1330	0.54	-0.1
1,357,977	+		GFF1330	0.55	-1.2
1,357,995	-		GFF1330	0.56	+0.6
1,358,009	+		GFF1330	0.58	-1.7
1,358,009	+		GFF1330	0.58	+0.3
1,358,019	+		GFF1330	0.58	+0.8
1,358,019	+		GFF1330	0.58	-0.5
1,358,021	+		GFF1330	0.58	-0.9
1,358,027	-		GFF1330	0.59	+0.7
1,358,073	-		GFF1330	0.62	-0.4
1,358,201	-		GFF1330	0.72	+0.6
1,358,212	-		GFF1330	0.73	-1.0
1,358,222	-		GFF1330	0.73	+0.3
1,358,254	+		GFF1330	0.76	+0.0
1,358,270	+		GFF1330	0.77	+0.3
1,358,299	+		GFF1330	0.79	-1.5
1,358,314	+		GFF1330	0.80	-1.5
1,358,334	+		GFF1330	0.82	-2.1
1,358,334	+		GFF1330	0.82	+0.4
1,358,342	-		GFF1330	0.83	-0.3
1,358,342	-		GFF1330	0.83	+1.0
1,358,348	+		GFF1330	0.83	-0.4
1,358,348	+		GFF1330	0.83	+0.6
1,358,348	+		GFF1330	0.83	-0.6
1,358,348	+		GFF1330	0.83	+0.8
1,358,348	+		GFF1330	0.83	+0.5
1,358,348	+		GFF1330	0.83	-1.9
1,358,348	+		GFF1330	0.83	-0.2
1,358,348	+		GFF1330	0.83	-1.0
1,358,348	+		GFF1330	0.83	-1.2
1,358,350	+		GFF1330	0.83	+1.0
1,358,356	-		GFF1330	0.84	-0.8
1,358,356	-		GFF1330	0.84	+0.9
1,358,356	-		GFF1330	0.84	-0.3
1,358,356	-		GFF1330	0.84	-1.2
1,358,356	-		GFF1330	0.84	-0.9
1,358,356	-		GFF1330	0.84	-2.6
1,358,358	+		GFF1330	0.84	+0.5
1,358,383	-		GFF1330	0.86	-1.2
1,358,384	+		GFF1330	0.86	-0.7
1,358,386	+		GFF1330	0.86	-0.1
1,358,389	-		GFF1330	0.86	-2.0
1,358,395	+		GFF1330	0.86	+0.3
1,358,408	-		GFF1330	0.87	-0.2
1,358,415	+		GFF1330	0.88	-1.1
1,358,433	+		GFF1330	0.89	+0.3
1,358,485	-				+2.0
1,358,568	-				+1.4
1,358,593	-				-1.4
1,358,603	-				-1.0
1,358,618	+				-0.2
1,358,626	-				+0.8
1,358,626	-				+0.1
1,358,626	-				-0.4
1,358,646	+				-2.0
1,358,646	+				-0.1
1,358,646	+				-0.7
1,358,655	-				-2.0
1,358,657	+				-0.2
1,358,669	+				-1.3
1,358,669	+				-0.4
1,358,669	+				+0.4
1,358,677	-				-0.4
1,358,717	+		GFF1331	0.14	+0.3
1,358,717	+		GFF1331	0.14	-1.9
1,358,717	+		GFF1331	0.14	+0.7
1,358,718	-		GFF1331	0.15	+0.3
1,358,718	-		GFF1331	0.15	-0.5
1,358,726	-		GFF1331	0.19	-0.5
1,358,728	+		GFF1331	0.20	+0.5
1,358,728	+		GFF1331	0.20	+0.2
1,358,728	+		GFF1331	0.20	-0.1
1,358,736	-		GFF1331	0.25	-1.0
1,358,746	-		GFF1331	0.31	+0.1
1,358,746	-		GFF1331	0.31	+1.8
1,358,746	-		GFF1331	0.31	-1.3
1,358,786	+		GFF1331	0.53	-0.2
1,358,794	+		GFF1331	0.58	+1.6
1,358,804	+		GFF1331	0.63	-0.1
1,358,804	+		GFF1331	0.63	-2.0
1,358,804	+		GFF1331	0.63	+0.7
1,358,804	+		GFF1331	0.63	-0.2
1,358,804	+		GFF1331	0.63	-1.3
1,358,804	+		GFF1331	0.63	-0.1
1,358,804	+		GFF1331	0.63	-0.4
1,358,804	+		GFF1331	0.63	-1.0
1,358,804	+		GFF1331	0.63	+0.3
1,358,804	+		GFF1331	0.63	+0.2
1,358,811	+		GFF1331	0.67	-1.8
1,358,811	+		GFF1331	0.67	-1.1
1,358,812	-		GFF1331	0.68	-0.1
1,358,812	-		GFF1331	0.68	-0.3
1,358,812	-		GFF1331	0.68	-1.4
1,358,812	-		GFF1331	0.68	+1.3
1,358,812	-		GFF1331	0.68	-0.5
1,358,817	-		GFF1331	0.71	+0.9
1,358,819	-		GFF1331	0.72	-2.4
1,358,821	-		GFF1331	0.73	-0.4
1,358,833	+		GFF1331	0.80	+0.4
1,358,843	+		GFF1331	0.85	-0.5
1,358,856	+				-0.0
1,358,864	-				+0.2
1,358,864	-				-0.4
1,358,872	+				+0.9
1,358,880	-				-1.3
1,358,880	-				-1.9
1,358,880	-				+0.9
1,358,893	-				-0.6
1,358,894	+				+1.1
1,358,894	+				-1.7
1,358,894	+				+1.1
1,358,902	-				+0.5
1,358,902	-				+0.1
1,358,902	-				-1.3
1,358,902	-				-0.3
1,358,904	+				+0.9
1,358,910	+				-0.5
1,358,913	+				-0.8
1,358,924	+				+0.6
1,358,939	-				+2.1
1,358,954	+				-0.2
1,358,960	+				+0.9
1,358,960	+				-1.4
1,358,960	+				-1.0
1,358,960	+				-0.7
1,358,960	+				-0.5
1,358,968	-				-0.5
1,358,968	-				+0.3
1,358,968	-				+0.7
1,358,968	-				-0.9
1,358,968	-				-0.0
1,358,968	-				-1.5
1,358,968	-				+0.9
1,358,968	-				-1.0
1,358,968	-				-0.0
1,358,979	+				-1.0
1,358,979	+				-0.4
1,358,988	-				-1.3
1,358,988	-				-1.0
1,358,990	-				-0.9
1,359,023	-				+1.0
1,359,026	+				+0.2
1,359,035	+				-0.6
1,359,035	+				+0.1
1,359,035	+				-1.2
1,359,048	-				+1.2
1,359,050	-				+0.1
1,359,053	+				+0.1
1,359,053	+				-0.4
1,359,061	-				+0.9
1,359,061	-				-1.0
1,359,072	-				-0.9
1,359,076	+				-1.3
1,359,076	+				+1.5
1,359,076	-				+0.3
1,359,084	-				-2.5
1,359,084	-				-0.3
1,359,089	-				+0.1
1,359,091	+				-0.1
1,359,167	+				+0.3
1,359,168	-				+1.2
1,359,188	-				-1.1
1,359,193	+				+1.1
1,359,193	+				+1.1
1,359,195	+				-1.4
1,359,200	+				-0.2
1,359,200	+				-1.8
1,359,207	+				-0.5
1,359,207	+				-0.3
1,359,207	+				-0.4
1,359,208	-				-0.5
1,359,208	-				-1.2
1,359,208	-				-0.7
1,359,213	+				+1.4
1,359,213	-				+0.5
1,359,215	-				-0.3
1,359,215	-				+0.2
1,359,218	+		GFF1332	0.10	-0.9
1,359,226	-		GFF1332	0.13	+1.3
1,359,226	-		GFF1332	0.13	-1.6
1,359,245	+		GFF1332	0.19	-0.6
1,359,246	-		GFF1332	0.20	+0.6
1,359,246	-		GFF1332	0.20	+0.4
1,359,252	+		GFF1332	0.22	-0.5
1,359,253	-		GFF1332	0.22	+0.1
1,359,255	-		GFF1332	0.23	-2.1
1,359,258	+		GFF1332	0.24	-0.2
1,359,287	+		GFF1332	0.34	-0.5
1,359,299	+		GFF1332	0.38	+0.5
1,359,307	+		GFF1332	0.41	+0.1
1,359,307	-		GFF1332	0.41	-0.6
1,359,315	-		GFF1332	0.44	+0.3
1,359,317	+		GFF1332	0.44	+1.0
1,359,345	+		GFF1332	0.54	+0.2
1,359,367	+		GFF1332	0.62	+0.4
1,359,373	-		GFF1332	0.64	+0.1
1,359,375	-		GFF1332	0.65	+0.6
1,359,376	+		GFF1332	0.65	-0.9
1,359,378	+		GFF1332	0.66	-1.1
1,359,470	+				-1.9
1,359,486	+				+0.6
1,359,487	+				+0.3