Strain Fitness in Sphingobium sp. HT1-2 around GFF1278

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,305,494	+		GFF1277	0.62	+0.3
1,305,495	+		GFF1277	0.62	-0.0
1,305,502	-		GFF1277	0.62	+0.2
1,305,508	-		GFF1277	0.62	-0.3
1,305,510	+		GFF1277	0.63	-1.6
1,305,528	+		GFF1277	0.63	+0.7
1,305,536	-		GFF1277	0.64	-1.6
1,305,541	+		GFF1277	0.64	-1.1
1,305,548	+		GFF1277	0.64	-0.7
1,305,552	+		GFF1277	0.65	-1.6
1,305,565	-		GFF1277	0.65	-1.0
1,305,566	+		GFF1277	0.65	+0.9
1,305,566	+		GFF1277	0.65	+0.8
1,305,566	+		GFF1277	0.65	-2.1
1,305,572	-		GFF1277	0.66	+0.2
1,305,574	-		GFF1277	0.66	+0.0
1,305,583	+		GFF1277	0.66	-0.0
1,305,608	-		GFF1277	0.67	+0.2
1,305,612	+		GFF1277	0.67	+0.3
1,305,612	+		GFF1277	0.67	-0.5
1,305,612	+		GFF1277	0.67	-0.7
1,305,612	+		GFF1277	0.67	+0.5
1,305,620	-		GFF1277	0.68	+1.5
1,305,650	+		GFF1277	0.69	+0.2
1,305,659	+		GFF1277	0.70	-0.9
1,305,694	+		GFF1277	0.71	-0.6
1,305,699	+		GFF1277	0.72	-1.2
1,305,702	-		GFF1277	0.72	-0.7
1,305,706	+		GFF1277	0.72	-0.5
1,305,714	-		GFF1277	0.72	+0.2
1,305,719	-		GFF1277	0.73	-0.3
1,305,721	+		GFF1277	0.73	-1.5
1,305,721	+		GFF1277	0.73	+0.2
1,305,726	+		GFF1277	0.73	+0.2
1,305,726	+		GFF1277	0.73	-0.2
1,305,726	+		GFF1277	0.73	+1.3
1,305,726	+		GFF1277	0.73	-0.7
1,305,731	+		GFF1277	0.73	+0.3
1,305,731	+		GFF1277	0.73	-0.1
1,305,731	+		GFF1277	0.73	-0.8
1,305,734	-		GFF1277	0.73	-1.2
1,305,734	-		GFF1277	0.73	-1.0
1,305,734	-		GFF1277	0.73	-0.8
1,305,739	-		GFF1277	0.74	+0.6
1,305,739	-		GFF1277	0.74	+1.2
1,305,739	-		GFF1277	0.74	-0.5
1,305,739	-		GFF1277	0.74	-2.1
1,305,749	+		GFF1277	0.74	-0.3
1,305,782	+		GFF1277	0.76	+0.1
1,305,799	+		GFF1277	0.76	-0.4
1,305,800	+		GFF1277	0.77	-1.0
1,305,801	+		GFF1277	0.77	+0.8
1,305,801	+		GFF1277	0.77	-0.3
1,305,801	+		GFF1277	0.77	-1.6
1,305,803	+		GFF1277	0.77	+2.0
1,305,803	+		GFF1277	0.77	+0.9
1,305,809	-		GFF1277	0.77	-1.0
1,305,811	-		GFF1277	0.77	-2.2
1,305,846	-		GFF1277	0.79	-0.5
1,305,846	-		GFF1277	0.79	+1.0
1,305,869	+		GFF1277	0.80	+0.0
1,305,869	+		GFF1277	0.80	+0.3
1,305,874	+		GFF1277	0.80	-3.2
1,305,879	+		GFF1277	0.80	-1.2
1,305,879	+		GFF1277	0.80	+1.0
1,305,879	+		GFF1277	0.80	-0.9
1,305,879	+		GFF1277	0.80	-0.1
1,305,879	+		GFF1277	0.80	+0.9
1,305,879	+		GFF1277	0.80	+0.3
1,305,879	+		GFF1277	0.80	-1.4
1,305,887	-		GFF1277	0.81	-1.5
1,305,887	-		GFF1277	0.81	+0.3
1,305,887	-		GFF1277	0.81	-0.4
1,305,887	-		GFF1277	0.81	-2.1
1,305,887	-		GFF1277	0.81	-0.5
1,305,892	-		GFF1277	0.81	-0.4
1,305,921	+		GFF1277	0.82	-1.4
1,305,934	-		GFF1277	0.83	-0.4
1,305,944	-		GFF1277	0.83	-0.6
1,305,968	+		GFF1277	0.85	-0.3
1,306,044	+		GFF1277	0.88	-1.4
1,306,044	+		GFF1277	0.88	+0.1
1,306,052	-		GFF1277	0.89	-0.9
1,306,068	-		GFF1277	0.89	-0.1
1,306,072	+		GFF1277	0.90	-1.5
1,306,072	+		GFF1277	0.90	-0.1
1,306,072	+		GFF1277	0.90	-0.5
1,306,072	+		GFF1277	0.90	-0.8
1,306,080	-				-0.8
1,306,080	-				-1.5
1,306,082	+				-1.1
1,306,082	+				+0.4
1,306,082	+				-1.2
1,306,082	+				+0.3
1,306,082	+				-2.0
1,306,082	+				+0.4
1,306,082	+				-0.5
1,306,082	+				-0.8
1,306,090	-				-0.8
1,306,090	-				-0.1
1,306,090	-				-0.4
1,306,090	-				+1.2
1,306,090	-				+0.3
1,306,090	-				-2.1
1,306,115	-				+1.0
1,306,138	+				+0.9
1,306,138	+				-0.2
1,306,138	+				+0.3
1,306,138	+				+0.7
1,306,138	+				+0.5
1,306,138	+				-0.7
1,306,143	+				+1.2
1,306,143	+				-0.6
1,306,146	-				+0.9
1,306,146	-				-0.6
1,306,148	+				+0.4
1,306,151	-				-1.7
1,306,151	-				+0.4
1,306,160	+				+0.1
1,306,171	+				-2.4
1,306,189	-				-0.8
1,306,197	+				+0.4
1,306,197	+				+0.1
1,306,200	-				+0.9
1,306,202	+				-1.7
1,306,205	-				-1.3
1,306,210	-				-0.2
1,306,210	-				-1.0
1,306,210	-				-1.6
1,306,223	+				+0.3
1,306,245	+				+0.4
1,306,329	+				-0.1
1,306,333	-				+0.8
1,306,333	-				+0.7
1,306,335	-				+0.3
1,306,337	-				+0.1
1,306,370	+				-0.0
1,306,370	+				+0.1
1,306,371	+				-1.1
1,306,379	-				+0.9
1,306,379	-				-1.0
1,306,379	-				-0.1
1,306,379	-				+0.8
1,306,412	-				+0.5
1,306,417	+				-0.5
1,306,423	-				-1.4
1,306,440	+				-0.6
1,306,441	+				+0.3
1,306,449	-				+0.3
1,306,449	-				-2.3
1,306,449	-				-0.4
1,306,449	-				-2.2
1,306,449	-				+1.3
1,306,466	+				-0.2
1,306,519	-				+0.3
1,306,534	-				+1.0
1,306,541	+				+0.4
1,306,541	+				-0.7
1,306,541	+				+1.2
1,306,544	-				-0.5
1,306,549	-				-0.4
1,306,549	-				-1.1
1,306,558	+				-0.6
1,306,560	+				-0.5
1,306,588	-				-2.5
1,306,598	-				+1.4
1,306,626	+				-1.3
1,306,628	+				-0.4
1,306,628	-				-1.2
1,306,628	-				+1.1
1,306,634	-		GFF1278	0.10	-2.5
1,306,636	+		GFF1278	0.10	-0.7
1,306,644	-		GFF1278	0.11	-0.5
1,306,680	-		GFF1278	0.13	+0.1
1,306,709	+		GFF1278	0.15	+0.3
1,306,739	-		GFF1278	0.16	+0.7
1,306,781	+		GFF1278	0.19	-0.4
1,306,800	+		GFF1278	0.20	+0.8
1,306,805	+		GFF1278	0.20	-0.5
1,306,805	+		GFF1278	0.20	-1.3
1,306,813	-		GFF1278	0.21	+1.1
1,306,813	-		GFF1278	0.21	-0.4
1,306,830	+		GFF1278	0.22	-1.2
1,306,843	-		GFF1278	0.22	-0.5
1,306,876	+		GFF1278	0.24	-1.2
1,306,889	-		GFF1278	0.25	-0.1
1,306,911	+		GFF1278	0.26	+0.2
1,306,928	+		GFF1278	0.27	-0.2
1,306,941	-		GFF1278	0.28	-1.9
1,306,979	+		GFF1278	0.30	-2.3
1,306,979	+		GFF1278	0.30	-0.1
1,307,001	+		GFF1278	0.32	-2.0
1,307,001	+		GFF1278	0.32	-1.8
1,307,001	+		GFF1278	0.32	-1.6
1,307,001	+		GFF1278	0.32	-1.7
1,307,001	+		GFF1278	0.32	+0.1
1,307,009	-		GFF1278	0.32	+0.6
1,307,045	+		GFF1278	0.34	-0.4
1,307,050	+		GFF1278	0.34	+0.2
1,307,065	+		GFF1278	0.35	-1.6
1,307,066	+		GFF1278	0.35	+0.8
1,307,114	+		GFF1278	0.38	-0.2
1,307,115	+		GFF1278	0.38	-0.7
1,307,148	+		GFF1278	0.40	+0.4
1,307,156	-		GFF1278	0.41	-0.5
1,307,156	-		GFF1278	0.41	-0.6
1,307,221	+		GFF1278	0.44	+0.9
1,307,242	+		GFF1278	0.46	+1.0
1,307,242	+		GFF1278	0.46	-2.0
1,307,265	+		GFF1278	0.47	+0.1
1,307,265	-		GFF1278	0.47	-0.4
1,307,269	+		GFF1278	0.47	-0.5
1,307,269	+		GFF1278	0.47	+1.2
1,307,285	-		GFF1278	0.48	+0.1
1,307,321	+		GFF1278	0.50	-0.4
1,307,329	-		GFF1278	0.51	-0.2
1,307,335	+		GFF1278	0.51	-0.9
1,307,338	-		GFF1278	0.51	-1.1
1,307,343	+		GFF1278	0.52	-0.3
1,307,343	-		GFF1278	0.52	-0.3
1,307,343	-		GFF1278	0.52	-0.7
1,307,343	-		GFF1278	0.52	+0.4
1,307,356	+		GFF1278	0.52	+0.2
1,307,379	+		GFF1278	0.54	+0.1
1,307,387	-		GFF1278	0.54	-0.3
1,307,420	+		GFF1278	0.56	+0.8
1,307,423	-		GFF1278	0.56	-1.3
1,307,428	-		GFF1278	0.56	-1.6
1,307,430	+		GFF1278	0.57	-0.2
1,307,431	+		GFF1278	0.57	-0.1
1,307,433	-		GFF1278	0.57	+0.0
1,307,436	+		GFF1278	0.57	-0.4
1,307,436	+		GFF1278	0.57	-1.3
1,307,438	-		GFF1278	0.57	-0.9
1,307,438	-		GFF1278	0.57	+0.5
1,307,439	-		GFF1278	0.57	+0.1
1,307,444	-		GFF1278	0.57	-1.0
1,307,457	+		GFF1278	0.58	-0.9
1,307,457	+		GFF1278	0.58	+0.2
1,307,474	+		GFF1278	0.59	+1.2
1,307,487	-		GFF1278	0.60	-0.0
1,307,500	+		GFF1278	0.61	-2.4
1,307,500	+		GFF1278	0.61	-0.4
1,307,500	+		GFF1278	0.61	-1.3
1,307,508	-		GFF1278	0.61	-0.6
1,307,508	-		GFF1278	0.61	-0.0
1,307,508	-		GFF1278	0.61	+1.7
1,307,529	+		GFF1278	0.62	+0.6
1,307,573	+		GFF1278	0.65	-0.0
1,307,581	-		GFF1278	0.65	-0.5
1,307,588	+		GFF1278	0.66	-0.5
1,307,588	+		GFF1278	0.66	+0.2
1,307,588	-		GFF1278	0.66	-0.1
1,307,596	-		GFF1278	0.66	-2.0
1,307,596	-		GFF1278	0.66	-1.3
1,307,598	-		GFF1278	0.66	+0.4
1,307,611	-		GFF1278	0.67	+0.7
1,307,611	-		GFF1278	0.67	-0.5
1,307,619	-		GFF1278	0.68	+0.6
1,307,627	-		GFF1278	0.68	-0.2
1,307,641	-		GFF1278	0.69	-1.3
1,307,654	-		GFF1278	0.70	-0.8
1,307,654	-		GFF1278	0.70	-0.3
1,307,654	-		GFF1278	0.70	+0.3
1,307,654	-		GFF1278	0.70	-0.5
1,307,654	-		GFF1278	0.70	-0.3
1,307,659	-		GFF1278	0.70	+0.1
1,307,683	+		GFF1278	0.71	-0.8
1,307,683	+		GFF1278	0.71	-1.7
1,307,717	+		GFF1278	0.73	-2.2
1,307,722	+		GFF1278	0.74	+1.8
1,307,724	-		GFF1278	0.74	+0.7
1,307,724	-		GFF1278	0.74	+0.3
1,307,730	-		GFF1278	0.74	-1.0
1,307,730	-		GFF1278	0.74	+0.4
1,307,730	-		GFF1278	0.74	-0.2
1,307,730	-		GFF1278	0.74	+1.0
1,307,731	+		GFF1278	0.74	+1.3
1,307,732	+		GFF1278	0.74	-0.7
1,307,740	-		GFF1278	0.75	+1.3
1,307,740	-		GFF1278	0.75	+0.1
1,307,810	+		GFF1278	0.79	-0.4
1,307,813	-		GFF1278	0.79	+0.7
1,307,815	+		GFF1278	0.79	+0.4
1,307,817	+		GFF1278	0.79	-0.5
1,307,823	-		GFF1278	0.79	+0.2
1,307,843	+		GFF1278	0.81	+1.0
1,307,886	+		GFF1278	0.83	-1.0
1,307,887	-		GFF1278	0.83	-1.0
1,307,894	-		GFF1278	0.84	+1.2
1,307,930	-		GFF1278	0.86	+0.3
1,307,955	+		GFF1278	0.87	-1.0
1,307,975	+		GFF1278	0.88	-1.3
1,307,975	+		GFF1278	0.88	-1.0
1,307,975	+		GFF1278	0.88	+0.7
1,307,983	+		GFF1278	0.89	-2.0
1,307,983	-		GFF1278	0.89	-0.8
1,307,994	+		GFF1278	0.89	+0.2
1,308,026	-				+0.1
1,308,043	+				+0.5
1,308,046	+				-0.7
1,308,050	+				-1.5
1,308,051	-				-0.6
1,308,058	+				+1.7
1,308,065	+				+0.6
1,308,066	+				-1.4
1,308,066	+				-0.7
1,308,066	+				-1.7
1,308,066	+				+0.0
1,308,066	+				+1.0
1,308,071	+				-0.0
1,308,071	+				-1.6
1,308,073	-				+0.7
1,308,074	-				-0.1
1,308,074	-				+0.1
1,308,074	-				+0.7
1,308,079	-				-0.6
1,308,097	-				-0.5
1,308,099	+				-1.9
1,308,099	+				-1.1
1,308,130	+				-0.1
1,308,133	-				+0.6
1,308,138	+				+0.2
1,308,138	-				-0.9
1,308,146	+				-1.1
1,308,146	+				-1.7
1,308,151	+				-0.9
1,308,151	+				-1.4
1,308,152	+				-0.6
1,308,152	+				-2.0
1,308,159	-				+0.9
1,308,159	-				+0.3
1,308,159	-				-1.3
1,308,159	-				-0.2
1,308,159	-				-0.4
1,308,159	-				+0.0
1,308,159	-				-0.0
1,308,159	-				-1.7
1,308,164	-				+0.2
1,308,177	-				+0.9
1,308,202	+				-0.3
1,308,202	+				+0.5
1,308,210	-				+0.5
1,308,210	-				-0.3
1,308,228	+				-1.1
1,308,236	-				-1.0
1,308,255	-				-0.7
1,308,258	+				+0.8
1,308,282	-				-1.5
1,308,290	+		GFF1279	0.10	-0.5
1,308,306	+		GFF1279	0.11	-0.1
1,308,320	-		GFF1279	0.13	-0.2
1,308,349	-		GFF1279	0.15	+0.8
1,308,352	+		GFF1279	0.15	+0.4
1,308,361	-		GFF1279	0.16	+0.8
1,308,365	+		GFF1279	0.16	-0.3
1,308,365	+		GFF1279	0.16	+1.6
1,308,375	+		GFF1279	0.17	-2.2
1,308,375	+		GFF1279	0.17	+0.1
1,308,383	-		GFF1279	0.18	-0.2
1,308,383	-		GFF1279	0.18	-0.6
1,308,383	-		GFF1279	0.18	-0.0
1,308,402	+		GFF1279	0.20	-2.6
1,308,419	+		GFF1279	0.21	-0.5
1,308,419	+		GFF1279	0.21	-0.6
1,308,425	-		GFF1279	0.22	+0.4
1,308,425	-		GFF1279	0.22	+0.6
1,308,425	-		GFF1279	0.22	+0.1
1,308,440	+		GFF1279	0.23	+0.6
1,308,440	+		GFF1279	0.23	-1.6
1,308,448	-		GFF1279	0.24	+1.9
1,308,448	-		GFF1279	0.24	+0.1
1,308,448	-		GFF1279	0.24	-0.8
1,308,448	-		GFF1279	0.24	-0.4
1,308,448	-		GFF1279	0.24	+0.5
1,308,448	-		GFF1279	0.24	-1.9
1,308,469	-		GFF1279	0.25	-0.1
1,308,479	-		GFF1279	0.26	-0.6
1,308,497	+		GFF1279	0.28	-0.3
1,308,497	+		GFF1279	0.28	-1.2
1,308,497	+		GFF1279	0.28	+0.0
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