Strain Fitness in Sphingobium sp. HT1-2 around GFF1091

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,094,121	-		GFF1090	0.66	-0.3
1,094,122	+		GFF1090	0.66	-2.0
1,094,126	+		GFF1090	0.66	-1.3
1,094,132	+		GFF1090	0.66	-0.0
1,094,132	+		GFF1090	0.66	+0.2
1,094,150	+		GFF1090	0.67	-1.4
1,094,152	+		GFF1090	0.67	+0.0
1,094,152	+		GFF1090	0.67	-2.1
1,094,154	+		GFF1090	0.67	+0.8
1,094,160	-		GFF1090	0.68	-1.2
1,094,161	+		GFF1090	0.68	+0.1
1,094,161	+		GFF1090	0.68	-0.6
1,094,161	+		GFF1090	0.68	+0.7
1,094,161	+		GFF1090	0.68	-0.1
1,094,161	+		GFF1090	0.68	+0.6
1,094,161	+		GFF1090	0.68	-0.4
1,094,161	+		GFF1090	0.68	+1.3
1,094,162	-		GFF1090	0.68	-0.7
1,094,163	-		GFF1090	0.68	+0.3
1,094,166	+		GFF1090	0.68	-0.3
1,094,169	-		GFF1090	0.68	-1.4
1,094,169	-		GFF1090	0.68	+0.1
1,094,169	-		GFF1090	0.68	+0.1
1,094,169	-		GFF1090	0.68	-0.9
1,094,169	-		GFF1090	0.68	+0.0
1,094,169	-		GFF1090	0.68	+0.2
1,094,169	-		GFF1090	0.68	+0.4
1,094,169	-		GFF1090	0.68	+0.3
1,094,169	-		GFF1090	0.68	-0.3
1,094,169	-		GFF1090	0.68	-1.3
1,094,169	-		GFF1090	0.68	-0.7
1,094,169	-		GFF1090	0.68	-0.3
1,094,179	-		GFF1090	0.68	-2.0
1,094,179	-		GFF1090	0.68	-0.6
1,094,179	-		GFF1090	0.68	-0.3
1,094,192	+		GFF1090	0.69	+0.2
1,094,199	+		GFF1090	0.69	+0.1
1,094,200	-		GFF1090	0.69	+0.8
1,094,200	-		GFF1090	0.69	-1.4
1,094,200	-		GFF1090	0.69	-0.2
1,094,200	-		GFF1090	0.69	+1.1
1,094,200	-		GFF1090	0.69	-0.2
1,094,200	-		GFF1090	0.69	+1.1
1,094,200	-		GFF1090	0.69	+0.6
1,094,200	-		GFF1090	0.69	+0.8
1,094,205	+		GFF1090	0.70	-0.2
1,094,231	+		GFF1090	0.71	+0.1
1,094,239	-		GFF1090	0.71	-0.4
1,094,239	-		GFF1090	0.71	-0.3
1,094,241	+		GFF1090	0.71	-0.2
1,094,249	-		GFF1090	0.72	-1.7
1,094,253	+		GFF1090	0.72	-0.1
1,094,256	-		GFF1090	0.72	-1.3
1,094,259	-		GFF1090	0.72	-1.2
1,094,261	-		GFF1090	0.72	+0.4
1,094,261	-		GFF1090	0.72	-0.4
1,094,262	-		GFF1090	0.72	-0.2
1,094,264	+		GFF1090	0.73	-1.8
1,094,264	+		GFF1090	0.73	-0.4
1,094,269	+		GFF1090	0.73	-1.0
1,094,271	-		GFF1090	0.73	-1.2
1,094,272	-		GFF1090	0.73	+0.4
1,094,272	-		GFF1090	0.73	-1.7
1,094,272	-		GFF1090	0.73	-1.0
1,094,274	+		GFF1090	0.73	+0.5
1,094,288	+		GFF1090	0.74	-1.4
1,094,303	+		GFF1090	0.74	-0.4
1,094,311	-		GFF1090	0.75	+0.1
1,094,311	-		GFF1090	0.75	+0.7
1,094,317	+		GFF1090	0.75	+0.4
1,094,318	+		GFF1090	0.75	-0.7
1,094,325	-		GFF1090	0.75	+0.3
1,094,341	+		GFF1090	0.76	+0.7
1,094,346	+		GFF1090	0.76	+1.3
1,094,351	+		GFF1090	0.77	-1.2
1,094,354	-		GFF1090	0.77	+0.6
1,094,370	+		GFF1090	0.78	-1.3
1,094,370	-		GFF1090	0.78	-0.7
1,094,377	+		GFF1090	0.78	+0.6
1,094,378	-		GFF1090	0.78	-1.3
1,094,378	-		GFF1090	0.78	+0.4
1,094,383	+		GFF1090	0.78	+1.0
1,094,443	-		GFF1090	0.81	+0.5
1,094,456	+		GFF1090	0.82	-1.1
1,094,456	+		GFF1090	0.82	+0.7
1,094,475	+		GFF1090	0.83	+0.6
1,094,475	+		GFF1090	0.83	-1.3
1,094,475	+		GFF1090	0.83	+1.0
1,094,475	+		GFF1090	0.83	-1.1
1,094,482	+		GFF1090	0.83	-0.4
1,094,483	-		GFF1090	0.83	-0.1
1,094,483	-		GFF1090	0.83	+0.4
1,094,483	-		GFF1090	0.83	-0.4
1,094,483	-		GFF1090	0.83	-0.3
1,094,483	-		GFF1090	0.83	+0.5
1,094,485	+		GFF1090	0.83	-1.1
1,094,493	-		GFF1090	0.84	-1.5
1,094,493	-		GFF1090	0.84	-1.1
1,094,504	+		GFF1090	0.84	+0.6
1,094,519	+		GFF1090	0.85	+0.3
1,094,519	+		GFF1090	0.85	+0.1
1,094,525	-		GFF1090	0.85	-1.1
1,094,527	-		GFF1090	0.85	+0.1
1,094,527	-		GFF1090	0.85	+0.4
1,094,527	-		GFF1090	0.85	-0.7
1,094,527	-		GFF1090	0.85	-0.1
1,094,537	-		GFF1090	0.86	-0.4
1,094,556	-		GFF1090	0.87	-0.8
1,094,576	+		GFF1090	0.88	-0.7
1,094,576	+		GFF1090	0.88	-0.9
1,094,576	+		GFF1090	0.88	+0.1
1,094,654	-				+0.4
1,094,654	-				-1.1
1,094,659	+				+0.7
1,094,659	+				+0.7
1,094,659	+				+1.0
1,094,659	+				-0.2
1,094,659	+				-0.7
1,094,659	+				-1.2
1,094,659	+				+0.4
1,094,659	+				-0.7
1,094,659	+				-1.3
1,094,659	+				+0.3
1,094,659	+				-1.9
1,094,663	+				-1.2
1,094,663	+				+1.0
1,094,663	+				-0.7
1,094,667	-				-0.5
1,094,667	-				-0.6
1,094,673	+				-0.4
1,094,704	-				-0.6
1,094,706	+				-1.3
1,094,706	+				+0.2
1,094,706	+				-0.2
1,094,709	-				+0.3
1,094,714	-				-0.4
1,094,723	+				-1.7
1,094,723	+				-1.2
1,094,728	+				-0.6
1,094,731	-				-1.2
1,094,731	-				-1.3
1,094,731	-				+0.7
1,094,736	+				-1.3
1,094,738	-				-1.4
1,094,744	-				-0.3
1,094,746	+				-2.2
1,094,751	+				-0.1
1,094,751	+				+0.4
1,094,753	+				-2.3
1,094,754	-				+0.3
1,094,759	-				-0.7
1,094,759	-				-1.9
1,094,764	+				-0.6
1,094,772	+				-2.1
1,094,772	-				+0.1
1,094,774	-				-0.4
1,094,796	+				+0.8
1,094,796	+				+0.9
1,094,796	+				-0.1
1,094,796	+				-0.3
1,094,796	+				-0.1
1,094,804	-				-2.1
1,094,807	+				+1.3
1,094,809	-				+1.2
1,094,818	+				-0.4
1,094,823	+				-0.4
1,094,824	-				+0.1
1,094,841	+				-1.3
1,094,842	+				-0.1
1,094,855	+				+0.4
1,094,855	+				-0.1
1,094,863	-				+0.0
1,094,863	-				-0.2
1,094,863	-				-0.7
1,094,868	-				-0.6
1,094,882	+				+0.3
1,094,890	-				-1.8
1,094,890	-				+0.3
1,094,892	+				+0.3
1,094,903	+				-0.2
1,094,908	+				-0.3
1,094,908	+				+0.7
1,094,908	+				-1.3
1,094,908	+				+0.0
1,094,913	+				+0.6
1,094,921	-				+0.5
1,094,921	-				+0.6
1,094,928	-				-1.8
1,094,941	+				-0.6
1,094,941	+				-1.7
1,094,951	-				+1.0
1,094,959	+				+0.4
1,094,961	+				-0.0
1,094,961	+				+0.5
1,094,966	+				-2.0
1,094,966	+				-1.3
1,094,967	-				-0.1
1,094,969	+				-0.2
1,094,969	-				-0.2
1,094,980	+				-1.6
1,094,980	+				+1.2
1,094,982	-				-0.4
1,094,982	-				-0.0
1,094,987	-				-0.5
1,094,988	-				+0.2
1,094,988	-				+0.4
1,094,988	-				-2.0
1,095,014	+				+1.0
1,095,014	+				+0.2
1,095,017	-				+0.2
1,095,036	-				+0.4
1,095,087	+				-0.3
1,095,087	+				-0.5
1,095,095	-				+0.4
1,095,095	-				+0.7
1,095,098	+				+0.3
1,095,098	+				+0.0
1,095,098	+				+0.3
1,095,098	+				+0.4
1,095,108	+				-0.6
1,095,111	+				-0.3
1,095,111	+				-0.7
1,095,111	+				-0.7
1,095,111	+				-0.7
1,095,111	+				-1.4
1,095,111	-				-0.3
1,095,111	-				-1.5
1,095,119	-				+0.3
1,095,119	-				+1.6
1,095,121	+				+1.3
1,095,134	+				+0.2
1,095,134	+				+0.3
1,095,138	-				-0.6
1,095,144	+				+0.6
1,095,146	-				-0.4
1,095,156	-		GFF1091	0.12	+0.4
1,095,156	-		GFF1091	0.12	-0.5
1,095,163	+		GFF1091	0.13	+0.4
1,095,166	-		GFF1091	0.14	-0.4
1,095,166	-		GFF1091	0.14	+1.1
1,095,166	-		GFF1091	0.14	-1.7
1,095,167	+		GFF1091	0.15	+1.2
1,095,167	+		GFF1091	0.15	-0.2
1,095,167	+		GFF1091	0.15	-1.0
1,095,168	+		GFF1091	0.15	-1.5
1,095,168	+		GFF1091	0.15	-0.2
1,095,168	+		GFF1091	0.15	-0.7
1,095,168	+		GFF1091	0.15	+1.1
1,095,168	+		GFF1091	0.15	-1.4
1,095,175	-		GFF1091	0.17	-1.5
1,095,175	-		GFF1091	0.17	-2.3
1,095,175	-		GFF1091	0.17	-0.2
1,095,175	-		GFF1091	0.17	-0.6
1,095,175	-		GFF1091	0.17	-0.7
1,095,175	-		GFF1091	0.17	+1.3
1,095,176	-		GFF1091	0.17	-0.6
1,095,177	+		GFF1091	0.17	+0.1
1,095,177	+		GFF1091	0.17	-0.7
1,095,219	-		GFF1091	0.29	+0.0
1,095,224	-		GFF1091	0.30	+1.4
1,095,304	+		GFF1091	0.52	+0.7
1,095,333	+		GFF1091	0.60	-0.7
1,095,335	+		GFF1091	0.61	+0.1
1,095,341	-		GFF1091	0.63	-0.1
1,095,353	-		GFF1091	0.66	-0.9
1,095,370	+		GFF1091	0.71	+0.8
1,095,370	+		GFF1091	0.71	-1.3
1,095,370	+		GFF1091	0.71	+0.0
1,095,370	+		GFF1091	0.71	+0.4
1,095,378	-		GFF1091	0.73	-1.2
1,095,423	+		GFF1091	0.85	-0.1
1,095,471	+				-0.5
1,095,473	-				-0.2
1,095,479	-				-0.2
1,095,492	+				-0.3
1,095,492	+				+0.7
1,095,492	+				-0.7
1,095,496	+				-1.4
1,095,500	-				-2.4
1,095,502	+				-0.8
1,095,506	+				-1.3
1,095,510	-				+0.8
1,095,520	+				+0.3
1,095,527	+				+1.3
1,095,527	+				-2.4
1,095,528	+				+0.3
1,095,528	+				-0.7
1,095,528	+				+1.3
1,095,528	+				-1.9
1,095,528	+				+0.1
1,095,528	+				+0.4
1,095,528	+				-0.8
1,095,528	-				-2.3
1,095,535	-				-0.3
1,095,535	-				+0.5
1,095,538	+				+0.3
1,095,538	+				-0.6
1,095,538	+				-0.3
1,095,538	+				+0.1
1,095,538	+				-0.9
1,095,540	+				-0.6
1,095,540	+				+0.0
1,095,540	+				-0.8
1,095,540	+				+0.0
1,095,540	+				-0.4
1,095,540	+				-1.7
1,095,546	-				-1.3
1,095,546	-				-0.3
1,095,546	-				-1.2
1,095,546	-				-0.2
1,095,546	-				-0.1
1,095,546	-				-1.2
1,095,548	-				-1.3
1,095,548	-				-0.2
1,095,548	-				-1.0
1,095,550	+				-0.1
1,095,550	+				-0.1
1,095,558	-				+0.4
1,095,558	-				-2.4
1,095,560	+				-0.6
1,095,560	+				-0.4
1,095,563	-				-1.2
1,095,563	-				+1.0
1,095,576	-		GFF1092	0.11	+1.2
1,095,582	-		GFF1092	0.12	-0.7
1,095,597	-		GFF1092	0.14	+0.6
1,095,608	+		GFF1092	0.15	+0.6
1,095,616	-		GFF1092	0.16	-1.6
1,095,616	-		GFF1092	0.16	-0.0
1,095,618	-		GFF1092	0.16	-1.6
1,095,618	-		GFF1092	0.16	+0.4
1,095,623	+		GFF1092	0.16	-2.0
1,095,628	+		GFF1092	0.17	-1.0
1,095,628	+		GFF1092	0.17	-0.9
1,095,628	+		GFF1092	0.17	-1.1
1,095,628	+		GFF1092	0.17	-1.7
1,095,628	+		GFF1092	0.17	-0.6
1,095,628	+		GFF1092	0.17	+0.6
1,095,628	+		GFF1092	0.17	+0.9
1,095,631	-		GFF1092	0.17	+1.4
1,095,633	-		GFF1092	0.18	+0.4
1,095,636	-		GFF1092	0.18	-1.2
1,095,636	-		GFF1092	0.18	-0.4
1,095,636	-		GFF1092	0.18	-0.8
1,095,636	-		GFF1092	0.18	+0.3
1,095,636	-		GFF1092	0.18	+0.8
1,095,646	-		GFF1092	0.19	-0.6
1,095,672	+		GFF1092	0.22	+0.8
1,095,680	-		GFF1092	0.23	-0.1
1,095,684	+		GFF1092	0.23	-1.7
1,095,684	+		GFF1092	0.23	+1.2
1,095,705	-		GFF1092	0.25	+1.1
1,095,716	+		GFF1092	0.27	-0.2
1,095,716	+		GFF1092	0.27	-0.9
1,095,721	+		GFF1092	0.27	+0.7
1,095,724	-		GFF1092	0.28	-0.6
1,095,729	-		GFF1092	0.28	-1.1
1,095,768	+		GFF1092	0.32	-1.2
1,095,768	+		GFF1092	0.32	+0.5
1,095,775	-		GFF1092	0.33	-1.6
1,095,797	+		GFF1092	0.36	+0.8
1,095,798	-		GFF1092	0.36	+0.3
1,095,821	+		GFF1092	0.38	-0.2
1,095,829	-		GFF1092	0.39	+0.4
1,095,829	-		GFF1092	0.39	+0.4
1,095,829	-		GFF1092	0.39	+0.8
1,095,831	+		GFF1092	0.39	+0.9
1,095,857	+		GFF1092	0.42	+1.2
1,095,862	-		GFF1092	0.43	-0.9
1,095,865	-		GFF1092	0.43	-0.7
1,095,867	+		GFF1092	0.43	-0.9
1,095,875	-		GFF1092	0.44	+0.1
1,095,875	-		GFF1092	0.44	+0.8
1,095,899	+		GFF1092	0.47	-1.7
1,095,913	+		GFF1092	0.48	+1.3
1,095,913	+		GFF1092	0.48	+1.1
1,095,913	+		GFF1092	0.48	+0.3
1,095,913	+		GFF1092	0.48	+0.5
1,095,913	+		GFF1092	0.48	+0.2
1,095,913	+		GFF1092	0.48	+0.2
1,095,913	+		GFF1092	0.48	+0.2
1,095,913	+		GFF1092	0.48	-1.2
1,095,913	+		GFF1092	0.48	-0.7
1,095,913	+		GFF1092	0.48	+0.6
1,095,913	+		GFF1092	0.48	-3.0
1,095,913	+		GFF1092	0.48	+0.4
1,095,913	+		GFF1092	0.48	-1.1
1,095,913	+		GFF1092	0.48	+1.1
1,095,913	+		GFF1092	0.48	-1.4
1,095,913	+		GFF1092	0.48	+0.3
1,095,913	+		GFF1092	0.48	+0.4
1,095,913	+		GFF1092	0.48	+0.4
1,095,913	+		GFF1092	0.48	+0.3
1,095,918	+		GFF1092	0.49	+0.4
1,095,921	-		GFF1092	0.49	+1.4
1,095,921	-		GFF1092	0.49	-0.3
1,095,921	-		GFF1092	0.49	-1.1
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1,096,295	+				-0.2
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1,096,358	+				-0.3
1,096,366	+				-2.9
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