Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF101 and GFF102 are separated by 6 nucleotides GFF102 and GFF103 are separated by 123 nucleotides
GFF101 - Carboxynorspermidine decarboxylase (EC 4.1.1.96), at 91,571 to 92,743
GFF101
GFF102 - Proline iminopeptidase (EC 3.4.11.5), at 92,750 to 93,841
GFF102
GFF103 - Carboxynorspermidine synthase (EC 1.5.1.43), at 93,965 to 95,170
GFF103
Position (kb) 92
93
94 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 92.778 kb on + strand at 92.778 kb on + strand at 92.786 kb on - strand at 92.786 kb on - strand at 92.786 kb on - strand at 92.797 kb on + strand at 92.798 kb on - strand at 92.812 kb on - strand at 92.819 kb on - strand at 92.878 kb on + strand, within GFF102 at 92.878 kb on + strand, within GFF102 at 92.888 kb on - strand, within GFF102 at 92.906 kb on + strand, within GFF102 at 92.906 kb on + strand, within GFF102 at 92.906 kb on + strand, within GFF102 at 92.908 kb on + strand, within GFF102 at 92.908 kb on + strand, within GFF102 at 92.913 kb on + strand, within GFF102 at 92.916 kb on - strand, within GFF102 at 92.916 kb on - strand, within GFF102 at 92.939 kb on + strand, within GFF102 at 92.957 kb on + strand, within GFF102 at 92.958 kb on - strand, within GFF102 at 92.983 kb on - strand, within GFF102 at 92.996 kb on - strand, within GFF102 at 93.023 kb on + strand, within GFF102 at 93.023 kb on + strand, within GFF102 at 93.030 kb on + strand, within GFF102 at 93.044 kb on + strand, within GFF102 at 93.044 kb on + strand, within GFF102 at 93.046 kb on + strand, within GFF102 at 93.051 kb on + strand, within GFF102 at 93.051 kb on + strand, within GFF102 at 93.052 kb on + strand, within GFF102 at 93.052 kb on - strand, within GFF102 at 93.054 kb on - strand, within GFF102 at 93.054 kb on - strand, within GFF102 at 93.059 kb on - strand, within GFF102 at 93.060 kb on - strand, within GFF102 at 93.060 kb on - strand, within GFF102 at 93.091 kb on - strand, within GFF102 at 93.097 kb on + strand, within GFF102 at 93.123 kb on - strand, within GFF102 at 93.130 kb on + strand, within GFF102 at 93.143 kb on - strand, within GFF102 at 93.173 kb on - strand, within GFF102 at 93.227 kb on - strand, within GFF102 at 93.237 kb on + strand, within GFF102 at 93.250 kb on + strand, within GFF102 at 93.255 kb on + strand, within GFF102 at 93.255 kb on + strand, within GFF102 at 93.260 kb on + strand, within GFF102 at 93.260 kb on + strand, within GFF102 at 93.260 kb on + strand, within GFF102 at 93.260 kb on + strand, within GFF102 at 93.260 kb on + strand, within GFF102 at 93.260 kb on + strand, within GFF102 at 93.260 kb on + strand, within GFF102 at 93.260 kb on + strand, within GFF102 at 93.260 kb on + strand, within GFF102 at 93.260 kb on + strand, within GFF102 at 93.260 kb on + strand, within GFF102 at 93.260 kb on + strand, within GFF102 at 93.264 kb on + strand, within GFF102 at 93.268 kb on - strand, within GFF102 at 93.268 kb on - strand, within GFF102 at 93.268 kb on - strand, within GFF102 at 93.268 kb on - strand, within GFF102 at 93.268 kb on - strand, within GFF102 at 93.268 kb on - strand, within GFF102 at 93.268 kb on - strand, within GFF102 at 93.268 kb on - strand, within GFF102 at 93.268 kb on - strand, within GFF102 at 93.268 kb on - strand, within GFF102 at 93.268 kb on - strand, within GFF102 at 93.304 kb on - strand, within GFF102 at 93.318 kb on + strand, within GFF102 at 93.318 kb on + strand, within GFF102 at 93.318 kb on + strand, within GFF102 at 93.318 kb on + strand, within GFF102 at 93.318 kb on + strand, within GFF102 at 93.318 kb on + strand, within GFF102 at 93.318 kb on + strand, within GFF102 at 93.318 kb on + strand, within GFF102 at 93.323 kb on + strand, within GFF102 at 93.326 kb on - strand, within GFF102 at 93.326 kb on - strand, within GFF102 at 93.328 kb on + strand, within GFF102 at 93.331 kb on - strand, within GFF102 at 93.336 kb on - strand, within GFF102 at 93.341 kb on - strand, within GFF102 at 93.367 kb on + strand, within GFF102 at 93.373 kb on + strand, within GFF102 at 93.393 kb on + strand, within GFF102 at 93.393 kb on + strand, within GFF102 at 93.394 kb on - strand, within GFF102 at 93.394 kb on - strand, within GFF102 at 93.401 kb on - strand, within GFF102 at 93.403 kb on + strand, within GFF102 at 93.414 kb on + strand, within GFF102 at 93.422 kb on - strand, within GFF102 at 93.433 kb on + strand, within GFF102 at 93.463 kb on + strand, within GFF102 at 93.465 kb on + strand, within GFF102 at 93.466 kb on - strand, within GFF102 at 93.473 kb on - strand, within GFF102 at 93.484 kb on + strand, within GFF102 at 93.492 kb on - strand, within GFF102 at 93.506 kb on + strand, within GFF102 at 93.506 kb on + strand, within GFF102 at 93.506 kb on + strand, within GFF102 at 93.506 kb on + strand, within GFF102 at 93.506 kb on + strand, within GFF102 at 93.506 kb on + strand, within GFF102 at 93.506 kb on + strand, within GFF102 at 93.507 kb on - strand, within GFF102 at 93.514 kb on - strand, within GFF102 at 93.514 kb on - strand, within GFF102 at 93.514 kb on - strand, within GFF102 at 93.514 kb on - strand, within GFF102 at 93.514 kb on - strand, within GFF102 at 93.524 kb on - strand, within GFF102 at 93.529 kb on - strand, within GFF102 at 93.534 kb on - strand, within GFF102 at 93.534 kb on - strand, within GFF102 at 93.535 kb on + strand, within GFF102 at 93.545 kb on + strand, within GFF102 at 93.578 kb on + strand, within GFF102 at 93.586 kb on - strand, within GFF102 at 93.586 kb on - strand, within GFF102 at 93.592 kb on - strand, within GFF102 at 93.616 kb on + strand, within GFF102 at 93.616 kb on - strand, within GFF102 at 93.623 kb on - strand, within GFF102 at 93.623 kb on - strand, within GFF102 at 93.624 kb on - strand, within GFF102 at 93.625 kb on + strand, within GFF102 at 93.655 kb on + strand, within GFF102 at 93.668 kb on - strand, within GFF102 at 93.691 kb on - strand, within GFF102 at 93.716 kb on - strand, within GFF102 at 93.746 kb on + strand at 93.841 kb on - strand at 93.866 kb on - strand at 93.869 kb on + strand at 93.869 kb on + strand at 93.870 kb on + strand at 93.882 kb on + strand at 93.887 kb on + strand at 93.889 kb on - strand at 93.890 kb on - strand at 93.952 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 92,778 + -1.9 92,778 + -1.5 92,786 - +0.4 92,786 - -0.7 92,786 - -0.2 92,797 + -1.1 92,798 - +0.4 92,812 - +1.1 92,819 - -1.0 92,878 + GFF102 0.12 +0.5 92,878 + GFF102 0.12 -0.3 92,888 - GFF102 0.13 -1.3 92,906 + GFF102 0.14 +1.4 92,906 + GFF102 0.14 +0.2 92,906 + GFF102 0.14 +0.4 92,908 + GFF102 0.14 +1.5 92,908 + GFF102 0.14 -0.0 92,913 + GFF102 0.15 -0.7 92,916 - GFF102 0.15 +0.3 92,916 - GFF102 0.15 -1.2 92,939 + GFF102 0.17 +0.2 92,957 + GFF102 0.19 -0.3 92,958 - GFF102 0.19 -0.9 92,983 - GFF102 0.21 +0.8 92,996 - GFF102 0.23 +0.9 93,023 + GFF102 0.25 -0.3 93,023 + GFF102 0.25 -1.8 93,030 + GFF102 0.26 +1.3 93,044 + GFF102 0.27 -0.1 93,044 + GFF102 0.27 -0.6 93,046 + GFF102 0.27 +1.3 93,051 + GFF102 0.28 -0.8 93,051 + GFF102 0.28 +0.4 93,052 + GFF102 0.28 -2.9 93,052 - GFF102 0.28 -0.5 93,054 - GFF102 0.28 -0.5 93,054 - GFF102 0.28 -0.5 93,059 - GFF102 0.28 -0.8 93,060 - GFF102 0.28 -0.9 93,060 - GFF102 0.28 -1.9 93,091 - GFF102 0.31 -1.8 93,097 + GFF102 0.32 +0.4 93,123 - GFF102 0.34 -0.1 93,130 + GFF102 0.35 -0.9 93,143 - GFF102 0.36 +0.7 93,173 - GFF102 0.39 -0.4 93,227 - GFF102 0.44 -1.1 93,237 + GFF102 0.45 +0.5 93,250 + GFF102 0.46 +0.5 93,255 + GFF102 0.46 -0.3 93,255 + GFF102 0.46 -0.6 93,260 + GFF102 0.47 -1.6 93,260 + GFF102 0.47 +0.2 93,260 + GFF102 0.47 -0.5 93,260 + GFF102 0.47 +0.4 93,260 + GFF102 0.47 +0.7 93,260 + GFF102 0.47 +1.1 93,260 + GFF102 0.47 -0.4 93,260 + GFF102 0.47 +0.2 93,260 + GFF102 0.47 -0.7 93,260 + GFF102 0.47 +0.9 93,260 + GFF102 0.47 -0.4 93,260 + GFF102 0.47 +0.8 93,264 + GFF102 0.47 -1.5 93,268 - GFF102 0.47 -0.6 93,268 - GFF102 0.47 -0.3 93,268 - GFF102 0.47 -0.9 93,268 - GFF102 0.47 +0.7 93,268 - GFF102 0.47 -2.9 93,268 - GFF102 0.47 +1.4 93,268 - GFF102 0.47 +0.8 93,268 - GFF102 0.47 +1.5 93,268 - GFF102 0.47 +0.6 93,268 - GFF102 0.47 -0.3 93,268 - GFF102 0.47 -0.2 93,304 - GFF102 0.51 +1.6 93,318 + GFF102 0.52 -1.3 93,318 + GFF102 0.52 +0.7 93,318 + GFF102 0.52 -0.5 93,318 + GFF102 0.52 -1.0 93,318 + GFF102 0.52 +0.4 93,318 + GFF102 0.52 -1.5 93,318 + GFF102 0.52 -2.4 93,318 + GFF102 0.52 -1.3 93,323 + GFF102 0.52 -0.0 93,326 - GFF102 0.53 +0.9 93,326 - GFF102 0.53 -1.2 93,328 + GFF102 0.53 +0.4 93,331 - GFF102 0.53 -0.2 93,336 - GFF102 0.54 -1.5 93,341 - GFF102 0.54 +0.2 93,367 + GFF102 0.57 -1.3 93,373 + GFF102 0.57 +0.0 93,393 + GFF102 0.59 -1.2 93,393 + GFF102 0.59 -0.8 93,394 - GFF102 0.59 -0.7 93,394 - GFF102 0.59 -1.1 93,401 - GFF102 0.60 +0.6 93,403 + GFF102 0.60 -0.3 93,414 + GFF102 0.61 -0.5 93,422 - GFF102 0.62 -2.9 93,433 + GFF102 0.63 +1.2 93,463 + GFF102 0.65 -0.8 93,465 + GFF102 0.65 -0.0 93,466 - GFF102 0.66 -1.9 93,473 - GFF102 0.66 -0.4 93,484 + GFF102 0.67 -0.3 93,492 - GFF102 0.68 -0.1 93,506 + GFF102 0.69 -2.5 93,506 + GFF102 0.69 -1.2 93,506 + GFF102 0.69 -0.5 93,506 + GFF102 0.69 +0.4 93,506 + GFF102 0.69 +0.3 93,506 + GFF102 0.69 -1.7 93,506 + GFF102 0.69 +0.3 93,507 - GFF102 0.69 -0.0 93,514 - GFF102 0.70 +0.7 93,514 - GFF102 0.70 -1.2 93,514 - GFF102 0.70 +0.2 93,514 - GFF102 0.70 +0.1 93,514 - GFF102 0.70 +0.6 93,524 - GFF102 0.71 -1.9 93,529 - GFF102 0.71 -0.2 93,534 - GFF102 0.72 -0.7 93,534 - GFF102 0.72 +0.1 93,535 + GFF102 0.72 -1.0 93,545 + GFF102 0.73 -1.9 93,578 + GFF102 0.76 -0.3 93,586 - GFF102 0.77 +0.8 93,586 - GFF102 0.77 +0.7 93,592 - GFF102 0.77 -1.6 93,616 + GFF102 0.79 -0.9 93,616 - GFF102 0.79 -0.2 93,623 - GFF102 0.80 -1.0 93,623 - GFF102 0.80 -1.5 93,624 - GFF102 0.80 -2.1 93,625 + GFF102 0.80 -1.7 93,655 + GFF102 0.83 -0.5 93,668 - GFF102 0.84 +1.1 93,691 - GFF102 0.86 -0.8 93,716 - GFF102 0.88 +0.4 93,746 + -0.6 93,841 - -0.1 93,866 - -1.9 93,869 + +0.3 93,869 + -2.1 93,870 + -1.4 93,882 + -2.0 93,887 + -2.1 93,889 - +0.4 93,890 - -0.9 93,952 - -0.6
Or see this region's nucleotide sequence