Strain Fitness in Sphingobium sp. HT1-2 around GFF1010

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
1,010,532	+		GFF1009	0.14	-1.3
1,010,532	+		GFF1009	0.14	-0.1
1,010,540	-		GFF1009	0.15	+0.7
1,010,540	-		GFF1009	0.15	-0.1
1,010,540	-		GFF1009	0.15	+0.8
1,010,568	+		GFF1009	0.17	+0.0
1,010,568	+		GFF1009	0.17	-0.2
1,010,568	+		GFF1009	0.17	+1.0
1,010,568	+		GFF1009	0.17	+1.7
1,010,570	+		GFF1009	0.18	+0.0
1,010,573	+		GFF1009	0.18	-1.4
1,010,576	-		GFF1009	0.18	+2.0
1,010,578	+		GFF1009	0.18	+0.4
1,010,578	-		GFF1009	0.18	-1.0
1,010,578	-		GFF1009	0.18	-0.4
1,010,581	-		GFF1009	0.19	+0.3
1,010,601	+		GFF1009	0.21	-1.8
1,010,627	-		GFF1009	0.23	+0.0
1,010,629	+		GFF1009	0.23	+0.9
1,010,629	+		GFF1009	0.23	+1.0
1,010,637	-		GFF1009	0.24	+0.4
1,010,714	-		GFF1009	0.31	-0.3
1,010,731	-		GFF1009	0.33	-1.6
1,010,738	+		GFF1009	0.34	-1.0
1,010,738	+		GFF1009	0.34	-1.7
1,010,746	-		GFF1009	0.34	+0.9
1,010,746	-		GFF1009	0.34	-0.0
1,010,748	-		GFF1009	0.35	-1.2
1,010,769	-		GFF1009	0.37	-0.9
1,010,779	-		GFF1009	0.38	-1.4
1,010,791	+		GFF1009	0.39	-0.6
1,010,791	+		GFF1009	0.39	-1.6
1,010,791	+		GFF1009	0.39	+0.3
1,010,791	+		GFF1009	0.39	+0.5
1,010,791	+		GFF1009	0.39	+1.4
1,010,791	+		GFF1009	0.39	-1.1
1,010,799	-		GFF1009	0.39	+0.1
1,010,799	-		GFF1009	0.39	-1.8
1,010,799	-		GFF1009	0.39	-0.9
1,010,801	+		GFF1009	0.40	+1.4
1,010,801	+		GFF1009	0.40	-1.0
1,010,801	+		GFF1009	0.40	-0.3
1,010,801	+		GFF1009	0.40	-0.7
1,010,801	+		GFF1009	0.40	+0.9
1,010,801	+		GFF1009	0.40	-1.2
1,010,809	-		GFF1009	0.40	-0.3
1,010,809	-		GFF1009	0.40	+0.3
1,010,834	+		GFF1009	0.43	-0.9
1,010,842	-		GFF1009	0.44	-0.4
1,010,870	-		GFF1009	0.46	+0.1
1,010,885	-		GFF1009	0.48	-0.2
1,010,889	-		GFF1009	0.48	-0.1
1,010,899	-		GFF1009	0.49	-1.6
1,010,902	+		GFF1009	0.49	-2.1
1,010,902	+		GFF1009	0.49	+0.7
1,010,902	+		GFF1009	0.49	+0.2
1,010,902	+		GFF1009	0.49	+0.2
1,010,910	-		GFF1009	0.50	+0.7
1,010,910	-		GFF1009	0.50	+0.3
1,010,915	-		GFF1009	0.50	-0.6
1,010,915	-		GFF1009	0.50	-0.2
1,010,915	-		GFF1009	0.50	+0.5
1,010,937	-		GFF1009	0.53	+0.4
1,010,949	+		GFF1009	0.54	+0.4
1,011,009	-		GFF1009	0.59	+0.1
1,011,011	+		GFF1009	0.60	-0.4
1,011,013	+		GFF1009	0.60	+0.8
1,011,021	-		GFF1009	0.61	+1.2
1,011,034	+		GFF1009	0.62	+0.3
1,011,034	+		GFF1009	0.62	+1.0
1,011,034	+		GFF1009	0.62	-0.4
1,011,034	+		GFF1009	0.62	-0.2
1,011,034	+		GFF1009	0.62	+0.6
1,011,042	-		GFF1009	0.63	+0.4
1,011,042	-		GFF1009	0.63	-2.2
1,011,044	+		GFF1009	0.63	-0.5
1,011,044	+		GFF1009	0.63	-0.9
1,011,044	+		GFF1009	0.63	-0.6
1,011,046	-		GFF1009	0.63	+1.1
1,011,052	-		GFF1009	0.64	-1.2
1,011,052	-		GFF1009	0.64	+0.2
1,011,057	-		GFF1009	0.64	-1.2
1,011,076	+		GFF1009	0.66	+0.8
1,011,077	+		GFF1009	0.66	+1.7
1,011,081	+		GFF1009	0.66	+0.1
1,011,084	-		GFF1009	0.67	-0.4
1,011,089	-		GFF1009	0.67	+0.3
1,011,099	+		GFF1009	0.68	+0.3
1,011,099	-		GFF1009	0.68	-1.8
1,011,132	+		GFF1009	0.71	-0.0
1,011,212	+		GFF1009	0.79	+0.3
1,011,237	+		GFF1009	0.81	-0.4
1,011,237	+		GFF1009	0.81	+1.8
1,011,237	+		GFF1009	0.81	-1.3
1,011,237	+		GFF1009	0.81	-0.2
1,011,245	-		GFF1009	0.82	-1.2
1,011,245	-		GFF1009	0.82	-1.1
1,011,245	-		GFF1009	0.82	-0.7
1,011,245	-		GFF1009	0.82	+0.6
1,011,245	-		GFF1009	0.82	-0.6
1,011,245	-		GFF1009	0.82	+0.0
1,011,245	-		GFF1009	0.82	+0.3
1,011,317	+		GFF1009	0.89	-1.8
1,011,341	+				-0.3
1,011,363	+				+0.6
1,011,363	+				-0.7
1,011,371	-				-0.4
1,011,371	-				+0.1
1,011,376	-				-0.0
1,011,381	-				+0.3
1,011,393	-				+0.2
1,011,396	+				-0.4
1,011,414	+				+1.6
1,011,414	+				-0.7
1,011,414	-				-1.7
1,011,415	-				+1.1
1,011,422	-				-1.9
1,011,427	-				+0.3
1,011,436	-				-0.4
1,011,457	+				-1.2
1,011,467	-				-1.5
1,011,496	+				+0.8
1,011,496	+				-0.2
1,011,496	+				+0.8
1,011,504	-				-0.6
1,011,504	-				-1.1
1,011,504	-				-2.6
1,011,512	+				+0.5
1,011,525	+				+0.1
1,011,530	-				+0.2
1,011,544	+				+0.3
1,011,544	+				+0.3
1,011,544	+				-0.4
1,011,548	+				+0.0
1,011,552	-				-0.6
1,011,552	-				-0.3
1,011,552	-				+1.2
1,011,563	-				-0.3
1,011,565	+				+0.1
1,011,565	+				-1.2
1,011,565	+				-1.3
1,011,573	-				+0.4
1,011,575	+				-1.3
1,011,585	+				-0.9
1,011,589	+				+0.8
1,011,589	+				-1.4
1,011,589	+				+0.2
1,011,592	-				+0.5
1,011,597	-				+0.0
1,011,597	-				-0.9
1,011,597	-				-1.6
1,011,611	+		GFF1010	0.10	-0.5
1,011,611	+		GFF1010	0.10	+0.8
1,011,611	+		GFF1010	0.10	-0.1
1,011,611	+		GFF1010	0.10	-0.4
1,011,611	+		GFF1010	0.10	-0.5
1,011,617	-		GFF1010	0.11	+0.5
1,011,619	-		GFF1010	0.11	-0.2
1,011,619	-		GFF1010	0.11	-0.6
1,011,619	-		GFF1010	0.11	-0.1
1,011,619	-		GFF1010	0.11	+0.3
1,011,625	+		GFF1010	0.12	-0.2
1,011,643	-		GFF1010	0.14	+0.8
1,011,648	-		GFF1010	0.15	-1.7
1,011,676	-		GFF1010	0.18	-2.6
1,011,696	+		GFF1010	0.21	-1.2
1,011,711	-		GFF1010	0.22	-1.1
1,011,736	-		GFF1010	0.26	-0.9
1,011,758	-		GFF1010	0.28	-0.1
1,011,780	-		GFF1010	0.31	-2.2
1,011,841	+		GFF1010	0.38	-1.6
1,011,857	+		GFF1010	0.40	-0.7
1,011,859	-		GFF1010	0.41	-0.2
1,011,870	-		GFF1010	0.42	+0.1
1,011,957	+		GFF1010	0.53	-0.4
1,011,957	+		GFF1010	0.53	-0.2
1,011,965	-		GFF1010	0.53	+0.1
1,011,967	+		GFF1010	0.54	-0.8
1,012,005	-		GFF1010	0.58	-0.4
1,012,045	+		GFF1010	0.63	-0.6
1,012,053	-		GFF1010	0.64	-1.3
1,012,067	-		GFF1010	0.66	+0.6
1,012,087	+		GFF1010	0.68	+0.4
1,012,087	+		GFF1010	0.68	+0.9
1,012,090	-		GFF1010	0.69	-1.4
1,012,093	+		GFF1010	0.69	-0.3
1,012,093	+		GFF1010	0.69	-0.1
1,012,094	+		GFF1010	0.69	+1.0
1,012,111	+		GFF1010	0.71	+1.7
1,012,111	-		GFF1010	0.71	+0.1
1,012,130	+		GFF1010	0.74	-0.1
1,012,130	+		GFF1010	0.74	+0.5
1,012,130	+		GFF1010	0.74	-1.6
1,012,130	+		GFF1010	0.74	-0.7
1,012,132	+		GFF1010	0.74	-0.4
1,012,136	-		GFF1010	0.74	-1.3
1,012,136	-		GFF1010	0.74	-0.2
1,012,136	-		GFF1010	0.74	+0.3
1,012,138	-		GFF1010	0.75	+0.5
1,012,138	-		GFF1010	0.75	-0.4
1,012,138	-		GFF1010	0.75	-0.1
1,012,138	-		GFF1010	0.75	-0.7
1,012,145	-		GFF1010	0.75	-0.7
1,012,180	+		GFF1010	0.80	-1.1
1,012,187	-		GFF1010	0.81	-0.6
1,012,206	-		GFF1010	0.83	+0.7
1,012,211	-		GFF1010	0.84	+0.3
1,012,223	+		GFF1010	0.85	+1.2
1,012,223	+		GFF1010	0.85	-1.0
1,012,223	+		GFF1010	0.85	-0.9
1,012,231	-		GFF1010	0.86	+0.1
1,012,236	-		GFF1010	0.87	-2.1
1,012,236	-		GFF1010	0.87	+0.3
1,012,280	-				-0.8
1,012,301	+				+0.1
1,012,320	+				-0.4
1,012,320	+				+0.6
1,012,320	+				-1.4
1,012,320	+				-0.4
1,012,325	+				+0.0
1,012,328	-				-0.5
1,012,328	-				+0.9
1,012,328	-				-0.6
1,012,328	-				-1.2
1,012,330	+				-1.8
1,012,330	+				-0.3
1,012,330	+				-2.2
1,012,330	+				+0.7
1,012,330	+				-0.2
1,012,333	-				+0.1
1,012,333	-				-1.2
1,012,333	-				+1.0
1,012,333	-				+0.2
1,012,338	-				-1.7
1,012,338	-				-2.7
1,012,338	-				-0.2
1,012,338	-				+0.4
1,012,338	-				-0.3
1,012,342	+				+0.3
1,012,342	+				+0.0
1,012,343	-				+1.1
1,012,343	-				-0.8
1,012,350	-				-0.8
1,012,350	-				-0.4
1,012,365	+				-0.0
1,012,373	-				-0.5
1,012,378	-				+0.4
1,012,378	-				-1.0
1,012,378	-				-0.2
1,012,382	-				-0.2
1,012,383	-				-0.3
1,012,414	+				+0.0
1,012,414	+				-0.2
1,012,414	+				-0.7
1,012,414	+				-1.0
1,012,416	+				+1.0
1,012,479	+		GFF1011	0.14	-0.1
1,012,510	+		GFF1011	0.17	+0.4
1,012,510	+		GFF1011	0.17	-0.1
1,012,510	-		GFF1011	0.17	-1.3
1,012,518	-		GFF1011	0.18	+1.1
1,012,518	-		GFF1011	0.18	-1.2
1,012,518	-		GFF1011	0.18	-0.7
1,012,518	-		GFF1011	0.18	+0.3
1,012,531	+		GFF1011	0.19	+0.7
1,012,532	-		GFF1011	0.19	-0.6
1,012,539	-		GFF1011	0.20	-0.1
1,012,559	+		GFF1011	0.22	-1.2
1,012,562	+		GFF1011	0.22	-1.3
1,012,562	+		GFF1011	0.22	+0.5
1,012,570	-		GFF1011	0.23	+0.2
1,012,570	-		GFF1011	0.23	-1.6
1,012,599	+		GFF1011	0.26	+0.4
1,012,605	+		GFF1011	0.26	-1.4
1,012,607	-		GFF1011	0.26	+0.2
1,012,607	-		GFF1011	0.26	-0.2
1,012,607	-		GFF1011	0.26	-1.1
1,012,607	-		GFF1011	0.26	+0.5
1,012,618	-		GFF1011	0.27	-0.1
1,012,639	-		GFF1011	0.29	+0.1
1,012,649	-		GFF1011	0.30	-0.4
1,012,650	-		GFF1011	0.31	-0.7
1,012,654	+		GFF1011	0.31	+0.3
1,012,674	-		GFF1011	0.33	-0.5
1,012,676	+		GFF1011	0.33	-0.7
1,012,676	+		GFF1011	0.33	+0.0
1,012,676	+		GFF1011	0.33	+0.7
1,012,679	-		GFF1011	0.33	-0.2
1,012,684	-		GFF1011	0.34	-0.6
1,012,684	-		GFF1011	0.34	-0.2
1,012,684	-		GFF1011	0.34	+0.7
1,012,684	-		GFF1011	0.34	+0.3
1,012,686	+		GFF1011	0.34	-0.8
1,012,692	+		GFF1011	0.35	-1.9
1,012,693	+		GFF1011	0.35	-0.2
1,012,699	+		GFF1011	0.35	+0.5
1,012,706	-		GFF1011	0.36	+0.3
1,012,707	-		GFF1011	0.36	+1.0
1,012,708	+		GFF1011	0.36	-1.0
1,012,718	+		GFF1011	0.37	-0.3
1,012,750	+		GFF1011	0.40	-0.3
1,012,782	+		GFF1011	0.43	+0.5
1,012,792	+		GFF1011	0.44	-1.3
1,012,797	-		GFF1011	0.45	-0.0
1,012,853	-		GFF1011	0.50	-2.4
1,012,853	-		GFF1011	0.50	-0.5
1,012,853	-		GFF1011	0.50	-0.3
1,012,853	-		GFF1011	0.50	-0.3
1,012,853	-		GFF1011	0.50	-0.0
1,012,854	-		GFF1011	0.50	-0.5
1,012,855	+		GFF1011	0.50	-0.3
1,012,855	+		GFF1011	0.50	+1.8
1,012,855	+		GFF1011	0.50	+0.7
1,012,855	+		GFF1011	0.50	-0.4
1,012,863	-		GFF1011	0.51	-0.9
1,012,863	-		GFF1011	0.51	-0.5
1,012,863	-		GFF1011	0.51	-0.1
1,012,863	-		GFF1011	0.51	-1.0
1,012,863	-		GFF1011	0.51	-0.7
1,012,879	+		GFF1011	0.53	-0.3
1,012,879	+		GFF1011	0.53	-0.6
1,012,882	-		GFF1011	0.53	-0.8
1,012,887	-		GFF1011	0.53	-0.6
1,012,887	-		GFF1011	0.53	-0.2
1,012,894	-		GFF1011	0.54	+0.4
1,012,930	+		GFF1011	0.57	-0.4
1,012,944	+		GFF1011	0.59	-0.7
1,012,945	-		GFF1011	0.59	-0.1
1,012,946	+		GFF1011	0.59	-0.1
1,012,946	+		GFF1011	0.59	-1.9
1,012,946	+		GFF1011	0.59	+0.4
1,012,946	+		GFF1011	0.59	-0.3
1,012,946	+		GFF1011	0.59	-1.7
1,012,946	+		GFF1011	0.59	-1.2
1,012,954	+		GFF1011	0.60	-0.8
1,012,954	+		GFF1011	0.60	+1.0
1,012,954	-		GFF1011	0.60	+1.4
1,012,963	-		GFF1011	0.61	+1.5
1,012,965	+		GFF1011	0.61	-1.1
1,012,977	+		GFF1011	0.62	+0.9
1,012,997	+		GFF1011	0.64	+0.6
1,013,016	+		GFF1011	0.66	-0.2
1,013,026	+		GFF1011	0.67	-1.2
1,013,047	+		GFF1011	0.69	-0.6
1,013,085	+		GFF1011	0.72	+0.6
1,013,092	-		GFF1011	0.73	-0.7
1,013,110	+		GFF1011	0.75	+0.6
1,013,113	+		GFF1011	0.75	-0.2
1,013,119	+		GFF1011	0.76	-1.7
1,013,131	+		GFF1011	0.77	-1.4
1,013,139	-		GFF1011	0.78	-0.1
1,013,141	+		GFF1011	0.78	-1.8
1,013,141	+		GFF1011	0.78	+0.6
1,013,149	-		GFF1011	0.78	-1.7
1,013,149	-		GFF1011	0.78	-1.2
1,013,180	-		GFF1011	0.81	+0.4
1,013,183	-		GFF1011	0.82	+0.4
1,013,204	-		GFF1011	0.84	-1.3
1,013,276	+				+0.6
1,013,276	+				-0.0
1,013,276	+				-0.9
1,013,277	-				-0.6
1,013,282	-				+0.6
1,013,284	-				-0.4
1,013,284	-				+0.5
1,013,284	-				-0.2
1,013,286	+				-0.9
1,013,296	+				+1.0
1,013,307	-				+0.6
1,013,328	-				-0.8
1,013,337	-				+1.9
1,013,339	+				-1.3