Strain Fitness in Sphingobium sp. HT1-2 around GFF1

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1 and GFF2 are separated by 66 nucleotides GFF1 - hypothetical protein, at 285 to 1,115 GFF1 GFF2 - hypothetical protein, at 1,182 to 1,940 GFF2 Position (kb) 0 1 2Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 0.134 kb on + strandat 0.134 kb on + strandat 0.134 kb on + strandat 0.134 kb on + strandat 0.142 kb on + strandat 0.150 kb on + strandat 0.155 kb on + strandat 0.162 kb on + strandat 0.162 kb on + strandat 0.215 kb on - strandat 0.225 kb on - strandat 0.225 kb on - strandat 0.225 kb on - strandat 0.225 kb on - strandat 0.299 kb on + strandat 0.299 kb on + strandat 0.299 kb on + strandat 0.301 kb on + strandat 0.307 kb on - strandat 0.339 kb on - strandat 0.356 kb on - strandat 0.358 kb on + strandat 0.379 kb on + strand, within GFF1at 0.468 kb on + strand, within GFF1at 0.468 kb on + strand, within GFF1at 0.527 kb on - strand, within GFF1at 0.628 kb on + strand, within GFF1at 0.628 kb on + strand, within GFF1at 0.628 kb on + strand, within GFF1at 0.663 kb on + strand, within GFF1at 0.663 kb on + strand, within GFF1at 0.663 kb on + strand, within GFF1at 0.663 kb on + strand, within GFF1at 0.671 kb on - strand, within GFF1at 0.671 kb on - strand, within GFF1at 0.671 kb on - strand, within GFF1at 0.697 kb on + strand, within GFF1at 0.705 kb on - strand, within GFF1at 0.705 kb on - strand, within GFF1at 0.709 kb on + strand, within GFF1at 0.717 kb on - strand, within GFF1at 0.741 kb on + strand, within GFF1at 0.743 kb on + strand, within GFF1at 0.751 kb on - strand, within GFF1at 0.751 kb on - strand, within GFF1at 0.751 kb on - strand, within GFF1at 0.751 kb on - strand, within GFF1at 0.762 kb on + strand, within GFF1at 0.767 kb on - strand, within GFF1at 0.772 kb on + strand, within GFF1at 0.772 kb on + strand, within GFF1at 0.808 kb on + strand, within GFF1at 0.808 kb on + strand, within GFF1at 0.808 kb on + strand, within GFF1at 0.816 kb on - strand, within GFF1at 0.841 kb on - strand, within GFF1at 0.857 kb on - strand, within GFF1at 0.882 kb on + strand, within GFF1at 0.882 kb on - strand, within GFF1at 0.887 kb on + strand, within GFF1at 0.890 kb on - strand, within GFF1at 0.895 kb on - strand, within GFF1at 0.895 kb on - strand, within GFF1at 0.931 kb on + strand, within GFF1at 0.931 kb on + strand, within GFF1at 0.939 kb on - strand, within GFF1at 0.947 kb on - strand, within GFF1at 0.956 kb on + strand, within GFF1at 0.964 kb on - strand, within GFF1at 0.964 kb on - strand, within GFF1at 0.964 kb on - strand, within GFF1at 0.964 kb on - strand, within GFF1at 0.964 kb on - strand, within GFF1at 0.966 kb on - strand, within GFF1at 1.003 kb on - strand, within GFF1at 1.134 kb on - strandat 1.152 kb on - strandat 1.170 kb on - strandat 1.258 kb on - strand, within GFF2at 1.341 kb on + strand, within GFF2at 1.359 kb on + strand, within GFF2at 1.359 kb on + strand, within GFF2at 1.367 kb on - strand, within GFF2at 1.368 kb on + strand, within GFF2at 1.406 kb on + strand, within GFF2at 1.406 kb on + strand, within GFF2at 1.412 kb on - strand, within GFF2at 1.414 kb on - strand, within GFF2at 1.427 kb on - strand, within GFF2at 1.438 kb on - strand, within GFF2at 1.469 kb on - strand, within GFF2at 1.495 kb on - strand, within GFF2at 1.518 kb on - strand, within GFF2at 1.611 kb on - strand, within GFF2at 1.637 kb on - strand, within GFF2at 1.656 kb on + strand, within GFF2at 1.664 kb on - strand, within GFF2at 1.664 kb on - strand, within GFF2at 1.664 kb on - strand, within GFF2at 1.748 kb on + strand, within GFF2at 1.751 kb on - strand, within GFF2at 1.751 kb on - strand, within GFF2at 1.766 kb on - strand, within GFF2at 1.786 kb on + strand, within GFF2at 1.896 kb on + strandat 1.904 kb on - strandat 2.071 kb on + strandat 2.071 kb on + strandat 2.071 kb on + strandat 2.071 kb on + strandat 2.071 kb on + strandat 2.071 kb on + strandat 2.071 kb on + strandat 2.071 kb on + strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.081 kb on + strandat 2.088 kb on + strandat 2.096 kb on - strandat 2.113 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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134 + -1.1
134 + -1.4
134 + -0.0
134 + +0.2
142 + -0.3
150 + +2.4
155 + -1.3
162 + +0.4
162 + -0.7
215 - -1.2
225 - -0.2
225 - -0.1
225 - -0.7
225 - -0.2
299 + +0.2
299 + +0.4
299 + -0.2
301 + +1.4
307 - +0.5
339 - +0.9
356 - -0.2
358 + -0.8
379 + GFF1 0.11 -0.3
468 + GFF1 0.22 -2.0
468 + GFF1 0.22 +1.0
527 - GFF1 0.29 +0.6
628 + GFF1 0.41 +0.7
628 + GFF1 0.41 +0.5
628 + GFF1 0.41 +0.7
663 + GFF1 0.45 -1.4
663 + GFF1 0.45 -0.2
663 + GFF1 0.45 +0.7
663 + GFF1 0.45 +0.3
671 - GFF1 0.46 -1.6
671 - GFF1 0.46 +0.5
671 - GFF1 0.46 +0.7
697 + GFF1 0.50 -1.0
705 - GFF1 0.51 -0.5
705 - GFF1 0.51 +0.6
709 + GFF1 0.51 +1.6
717 - GFF1 0.52 -1.3
741 + GFF1 0.55 -0.8
743 + GFF1 0.55 -0.4
751 - GFF1 0.56 +0.5
751 - GFF1 0.56 -0.0
751 - GFF1 0.56 -0.6
751 - GFF1 0.56 +0.5
762 + GFF1 0.57 +0.5
767 - GFF1 0.58 -0.5
772 + GFF1 0.59 +0.5
772 + GFF1 0.59 -0.9
808 + GFF1 0.63 -0.3
808 + GFF1 0.63 -2.1
808 + GFF1 0.63 +0.4
816 - GFF1 0.64 +0.0
841 - GFF1 0.67 -0.3
857 - GFF1 0.69 +0.2
882 + GFF1 0.72 -0.7
882 - GFF1 0.72 -0.5
887 + GFF1 0.72 +0.4
890 - GFF1 0.73 +0.7
895 - GFF1 0.73 -0.3
895 - GFF1 0.73 -1.3
931 + GFF1 0.78 -1.4
931 + GFF1 0.78 -0.6
939 - GFF1 0.79 +0.4
947 - GFF1 0.80 -0.7
956 + GFF1 0.81 -1.2
964 - GFF1 0.82 -0.0
964 - GFF1 0.82 +0.9
964 - GFF1 0.82 +0.3
964 - GFF1 0.82 +0.8
964 - GFF1 0.82 -1.1
966 - GFF1 0.82 +1.6
1,003 - GFF1 0.86 +0.2
1,134 - +0.2
1,152 - +0.0
1,170 - -0.7
1,258 - GFF2 0.10 +0.7
1,341 + GFF2 0.21 +0.2
1,359 + GFF2 0.23 -1.3
1,359 + GFF2 0.23 -1.6
1,367 - GFF2 0.24 +1.0
1,368 + GFF2 0.25 -0.2
1,406 + GFF2 0.30 -0.2
1,406 + GFF2 0.30 +0.1
1,412 - GFF2 0.30 +0.1
1,414 - GFF2 0.31 -0.1
1,427 - GFF2 0.32 -0.2
1,438 - GFF2 0.34 -3.2
1,469 - GFF2 0.38 -0.4
1,495 - GFF2 0.41 -0.4
1,518 - GFF2 0.44 -2.6
1,611 - GFF2 0.57 -2.1
1,637 - GFF2 0.60 -0.8
1,656 + GFF2 0.62 -0.6
1,664 - GFF2 0.64 +0.0
1,664 - GFF2 0.64 -0.9
1,664 - GFF2 0.64 +0.1
1,748 + GFF2 0.75 -0.9
1,751 - GFF2 0.75 +0.6
1,751 - GFF2 0.75 +0.1
1,766 - GFF2 0.77 -0.2
1,786 + GFF2 0.80 -1.9
1,896 + -0.8
1,904 - +0.8
2,071 + -2.2
2,071 + +0.8
2,071 + -1.5
2,071 + +0.3
2,071 + +1.1
2,071 + -0.3
2,071 + -2.2
2,071 + -0.1
2,079 - -0.6
2,079 - +1.5
2,079 - -0.8
2,079 - +0.2
2,079 - +0.1
2,079 - -0.2
2,079 - +0.5
2,079 - -0.4
2,079 - +0.2
2,079 - -0.7
2,079 - +0.1
2,079 - -2.1
2,079 - -1.8
2,081 + -0.5
2,088 + +0.6
2,096 - +0.1
2,113 - -1.5

Or see this region's nucleotide sequence