Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF949 and GFF950 are separated by 21 nucleotides GFF950 and GFF951 are separated by 5 nucleotides GFF951 and GFF952 are separated by 26 nucleotides
GFF949 - hypothetical protein, at 949,607 to 950,734
GFF949
GFF950 - hypothetical protein, at 950,756 to 951,049
GFF950
GFF951 - 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55), at 951,055 to 951,882
GFF951
GFF952 - Gamma-glutamyl phosphate reductase (EC 1.2.1.41), at 951,909 to 953,174
GFF952
Position (kb) 950
951
952 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 949.774 kb on - strand, within GFF949 at 949.802 kb on - strand, within GFF949 at 949.836 kb on + strand, within GFF949 at 949.847 kb on + strand, within GFF949 at 949.855 kb on - strand, within GFF949 at 949.855 kb on - strand, within GFF949 at 949.855 kb on - strand, within GFF949 at 949.855 kb on - strand, within GFF949 at 949.877 kb on + strand, within GFF949 at 949.877 kb on + strand, within GFF949 at 949.879 kb on + strand, within GFF949 at 949.885 kb on - strand, within GFF949 at 949.885 kb on - strand, within GFF949 at 949.912 kb on + strand, within GFF949 at 949.919 kb on - strand, within GFF949 at 949.919 kb on - strand, within GFF949 at 949.926 kb on - strand, within GFF949 at 949.946 kb on + strand, within GFF949 at 950.013 kb on + strand, within GFF949 at 950.013 kb on + strand, within GFF949 at 950.021 kb on - strand, within GFF949 at 950.021 kb on - strand, within GFF949 at 950.021 kb on - strand, within GFF949 at 950.023 kb on + strand, within GFF949 at 950.059 kb on - strand, within GFF949 at 950.082 kb on + strand, within GFF949 at 950.083 kb on + strand, within GFF949 at 950.090 kb on - strand, within GFF949 at 950.126 kb on - strand, within GFF949 at 950.145 kb on - strand, within GFF949 at 950.193 kb on - strand, within GFF949 at 950.193 kb on - strand, within GFF949 at 950.193 kb on - strand, within GFF949 at 950.204 kb on - strand, within GFF949 at 950.225 kb on - strand, within GFF949 at 950.249 kb on + strand, within GFF949 at 950.268 kb on + strand, within GFF949 at 950.276 kb on - strand, within GFF949 at 950.276 kb on - strand, within GFF949 at 950.276 kb on - strand, within GFF949 at 950.286 kb on + strand, within GFF949 at 950.319 kb on + strand, within GFF949 at 950.325 kb on - strand, within GFF949 at 950.432 kb on + strand, within GFF949 at 950.450 kb on - strand, within GFF949 at 950.455 kb on - strand, within GFF949 at 950.455 kb on - strand, within GFF949 at 950.478 kb on - strand, within GFF949 at 950.479 kb on - strand, within GFF949 at 950.486 kb on + strand, within GFF949 at 950.501 kb on + strand, within GFF949 at 950.506 kb on + strand, within GFF949 at 950.529 kb on - strand, within GFF949 at 950.547 kb on + strand, within GFF949 at 950.565 kb on + strand, within GFF949 at 950.595 kb on - strand, within GFF949 at 950.601 kb on + strand, within GFF949 at 950.609 kb on + strand, within GFF949 at 950.609 kb on - strand, within GFF949 at 950.632 kb on - strand at 950.632 kb on - strand at 950.634 kb on + strand at 950.634 kb on + strand at 950.634 kb on + strand at 950.634 kb on + strand at 950.636 kb on + strand at 950.642 kb on - strand at 950.644 kb on - strand at 950.655 kb on + strand at 950.655 kb on + strand at 950.663 kb on - strand at 950.697 kb on - strand at 950.697 kb on - strand at 950.697 kb on - strand at 950.697 kb on - strand at 950.703 kb on + strand at 950.704 kb on + strand at 950.713 kb on - strand at 950.726 kb on + strand at 950.744 kb on - strand at 950.744 kb on - strand at 950.755 kb on - strand at 950.914 kb on + strand, within GFF950 at 950.922 kb on - strand, within GFF950 at 950.922 kb on - strand, within GFF950 at 950.938 kb on + strand, within GFF950 at 950.961 kb on + strand, within GFF950 at 950.961 kb on + strand, within GFF950 at 950.961 kb on + strand, within GFF950 at 950.961 kb on + strand, within GFF950 at 950.968 kb on - strand, within GFF950 at 950.995 kb on - strand, within GFF950 at 950.999 kb on + strand, within GFF950 at 951.007 kb on - strand, within GFF950 at 951.040 kb on + strand at 951.048 kb on - strand at 951.053 kb on - strand at 951.059 kb on - strand at 951.072 kb on + strand at 951.078 kb on + strand at 951.160 kb on - strand, within GFF951 at 951.160 kb on - strand, within GFF951 at 951.162 kb on + strand, within GFF951 at 951.162 kb on + strand, within GFF951 at 951.162 kb on + strand, within GFF951 at 951.162 kb on + strand, within GFF951 at 951.162 kb on + strand, within GFF951 at 951.162 kb on + strand, within GFF951 at 951.162 kb on + strand, within GFF951 at 951.165 kb on - strand, within GFF951 at 951.170 kb on - strand, within GFF951 at 951.170 kb on - strand, within GFF951 at 951.170 kb on - strand, within GFF951 at 951.170 kb on - strand, within GFF951 at 951.210 kb on - strand, within GFF951 at 951.260 kb on - strand, within GFF951 at 951.316 kb on + strand, within GFF951 at 951.316 kb on + strand, within GFF951 at 951.316 kb on + strand, within GFF951 at 951.319 kb on - strand, within GFF951 at 951.321 kb on + strand, within GFF951 at 951.321 kb on + strand, within GFF951 at 951.321 kb on + strand, within GFF951 at 951.321 kb on + strand, within GFF951 at 951.324 kb on - strand, within GFF951 at 951.324 kb on - strand, within GFF951 at 951.324 kb on - strand, within GFF951 at 951.324 kb on - strand, within GFF951 at 951.324 kb on - strand, within GFF951 at 951.326 kb on + strand, within GFF951 at 951.326 kb on + strand, within GFF951 at 951.326 kb on + strand, within GFF951 at 951.326 kb on + strand, within GFF951 at 951.326 kb on + strand, within GFF951 at 951.326 kb on + strand, within GFF951 at 951.329 kb on - strand, within GFF951 at 951.334 kb on - strand, within GFF951 at 951.334 kb on - strand, within GFF951 at 951.334 kb on - strand, within GFF951 at 951.350 kb on + strand, within GFF951 at 951.350 kb on + strand, within GFF951 at 951.360 kb on + strand, within GFF951 at 951.368 kb on - strand, within GFF951 at 951.368 kb on - strand, within GFF951 at 951.368 kb on - strand, within GFF951 at 951.396 kb on + strand, within GFF951 at 951.411 kb on - strand, within GFF951 at 951.442 kb on + strand, within GFF951 at 951.445 kb on - strand, within GFF951 at 951.452 kb on + strand, within GFF951 at 951.475 kb on + strand, within GFF951 at 951.480 kb on + strand, within GFF951 at 951.483 kb on - strand, within GFF951 at 951.561 kb on - strand, within GFF951 at 951.578 kb on + strand, within GFF951 at 951.578 kb on + strand, within GFF951 at 951.578 kb on + strand, within GFF951 at 951.596 kb on - strand, within GFF951 at 951.640 kb on - strand, within GFF951 at 951.642 kb on + strand, within GFF951 at 951.681 kb on + strand, within GFF951 at 951.682 kb on + strand, within GFF951 at 951.707 kb on + strand, within GFF951 at 951.715 kb on - strand, within GFF951 at 951.715 kb on - strand, within GFF951 at 951.731 kb on + strand, within GFF951 at 951.737 kb on - strand, within GFF951 at 951.761 kb on + strand, within GFF951 at 951.835 kb on - strand at 951.849 kb on + strand at 951.849 kb on + strand at 951.876 kb on + strand at 951.876 kb on - strand at 951.876 kb on - strand at 951.877 kb on + strand at 951.877 kb on + strand at 951.877 kb on + strand at 951.877 kb on + strand at 951.877 kb on + strand at 951.878 kb on - strand at 951.883 kb on + strand at 951.883 kb on + strand at 951.883 kb on - strand at 951.891 kb on - strand at 951.915 kb on - strand at 951.921 kb on - strand at 951.931 kb on - strand at 951.962 kb on - strand at 951.970 kb on - strand at 952.003 kb on - strand at 952.029 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 949,774 - GFF949 0.15 -1.6 949,802 - GFF949 0.17 +0.0 949,836 + GFF949 0.20 -0.1 949,847 + GFF949 0.21 -0.5 949,855 - GFF949 0.22 -2.4 949,855 - GFF949 0.22 +0.2 949,855 - GFF949 0.22 -0.9 949,855 - GFF949 0.22 -0.7 949,877 + GFF949 0.24 +0.6 949,877 + GFF949 0.24 -0.2 949,879 + GFF949 0.24 -1.7 949,885 - GFF949 0.25 -1.8 949,885 - GFF949 0.25 -1.2 949,912 + GFF949 0.27 -1.4 949,919 - GFF949 0.28 +1.2 949,919 - GFF949 0.28 -1.4 949,926 - GFF949 0.28 +1.3 949,946 + GFF949 0.30 +0.2 950,013 + GFF949 0.36 +0.4 950,013 + GFF949 0.36 +0.2 950,021 - GFF949 0.37 +1.0 950,021 - GFF949 0.37 +0.7 950,021 - GFF949 0.37 +0.4 950,023 + GFF949 0.37 -2.6 950,059 - GFF949 0.40 +1.0 950,082 + GFF949 0.42 +0.8 950,083 + GFF949 0.42 -1.5 950,090 - GFF949 0.43 +0.3 950,126 - GFF949 0.46 -1.4 950,145 - GFF949 0.48 +0.1 950,193 - GFF949 0.52 -1.2 950,193 - GFF949 0.52 -1.1 950,193 - GFF949 0.52 -0.8 950,204 - GFF949 0.53 -1.2 950,225 - GFF949 0.55 -1.4 950,249 + GFF949 0.57 -0.2 950,268 + GFF949 0.59 +0.0 950,276 - GFF949 0.59 -1.5 950,276 - GFF949 0.59 +0.0 950,276 - GFF949 0.59 -0.2 950,286 + GFF949 0.60 -0.7 950,319 + GFF949 0.63 -1.7 950,325 - GFF949 0.64 +1.1 950,432 + GFF949 0.73 -0.1 950,450 - GFF949 0.75 -1.6 950,455 - GFF949 0.75 +0.8 950,455 - GFF949 0.75 +0.5 950,478 - GFF949 0.77 +0.8 950,479 - GFF949 0.77 -2.2 950,486 + GFF949 0.78 -0.7 950,501 + GFF949 0.79 +0.8 950,506 + GFF949 0.80 -0.2 950,529 - GFF949 0.82 -0.5 950,547 + GFF949 0.83 -0.1 950,565 + GFF949 0.85 +0.4 950,595 - GFF949 0.88 -0.4 950,601 + GFF949 0.88 +0.0 950,609 + GFF949 0.89 +0.5 950,609 - GFF949 0.89 +0.2 950,632 - +0.2 950,632 - -2.3 950,634 + -1.5 950,634 + -0.7 950,634 + +0.5 950,634 + +0.3 950,636 + -0.2 950,642 - -0.2 950,644 - -1.7 950,655 + +0.9 950,655 + -0.5 950,663 - -0.3 950,697 - -1.6 950,697 - +0.1 950,697 - +0.3 950,697 - -0.2 950,703 + -1.6 950,704 + -1.5 950,713 - -0.1 950,726 + -0.1 950,744 - -0.7 950,744 - +1.4 950,755 - +0.1 950,914 + GFF950 0.54 -1.7 950,922 - GFF950 0.56 -0.0 950,922 - GFF950 0.56 -2.4 950,938 + GFF950 0.62 -0.6 950,961 + GFF950 0.70 +0.5 950,961 + GFF950 0.70 +0.3 950,961 + GFF950 0.70 -1.5 950,961 + GFF950 0.70 -1.9 950,968 - GFF950 0.72 -0.5 950,995 - GFF950 0.81 +1.5 950,999 + GFF950 0.83 -1.7 951,007 - GFF950 0.85 -1.4 951,040 + -0.1 951,048 - -0.1 951,053 - -0.4 951,059 - +0.9 951,072 + -0.1 951,078 + +1.4 951,160 - GFF951 0.13 -1.2 951,160 - GFF951 0.13 +0.4 951,162 + GFF951 0.13 -0.4 951,162 + GFF951 0.13 +0.7 951,162 + GFF951 0.13 -1.0 951,162 + GFF951 0.13 +0.5 951,162 + GFF951 0.13 +0.5 951,162 + GFF951 0.13 -1.8 951,162 + GFF951 0.13 +0.1 951,165 - GFF951 0.13 -0.1 951,170 - GFF951 0.14 +0.7 951,170 - GFF951 0.14 -1.8 951,170 - GFF951 0.14 -1.6 951,170 - GFF951 0.14 -0.7 951,210 - GFF951 0.19 +0.0 951,260 - GFF951 0.25 -1.7 951,316 + GFF951 0.32 -1.8 951,316 + GFF951 0.32 +1.4 951,316 + GFF951 0.32 -1.8 951,319 - GFF951 0.32 -0.5 951,321 + GFF951 0.32 +0.4 951,321 + GFF951 0.32 +0.1 951,321 + GFF951 0.32 -0.1 951,321 + GFF951 0.32 +0.5 951,324 - GFF951 0.32 +0.8 951,324 - GFF951 0.32 -2.0 951,324 - GFF951 0.32 +1.0 951,324 - GFF951 0.32 -0.4 951,324 - GFF951 0.32 -1.5 951,326 + GFF951 0.33 -1.0 951,326 + GFF951 0.33 -0.1 951,326 + GFF951 0.33 -2.0 951,326 + GFF951 0.33 -0.3 951,326 + GFF951 0.33 +0.8 951,326 + GFF951 0.33 -0.9 951,329 - GFF951 0.33 -0.6 951,334 - GFF951 0.34 +1.1 951,334 - GFF951 0.34 -0.5 951,334 - GFF951 0.34 +0.2 951,350 + GFF951 0.36 +1.1 951,350 + GFF951 0.36 -0.7 951,360 + GFF951 0.37 -0.2 951,368 - GFF951 0.38 +0.2 951,368 - GFF951 0.38 -1.5 951,368 - GFF951 0.38 -0.6 951,396 + GFF951 0.41 -0.7 951,411 - GFF951 0.43 -0.1 951,442 + GFF951 0.47 -0.2 951,445 - GFF951 0.47 -2.1 951,452 + GFF951 0.48 -0.8 951,475 + GFF951 0.51 -0.5 951,480 + GFF951 0.51 +0.3 951,483 - GFF951 0.52 +0.4 951,561 - GFF951 0.61 -1.0 951,578 + GFF951 0.63 -0.6 951,578 + GFF951 0.63 -0.3 951,578 + GFF951 0.63 -0.8 951,596 - GFF951 0.65 -1.1 951,640 - GFF951 0.71 +1.4 951,642 + GFF951 0.71 -0.1 951,681 + GFF951 0.76 +0.6 951,682 + GFF951 0.76 +1.1 951,707 + GFF951 0.79 -0.6 951,715 - GFF951 0.80 -0.7 951,715 - GFF951 0.80 +0.9 951,731 + GFF951 0.82 -0.6 951,737 - GFF951 0.82 -0.3 951,761 + GFF951 0.85 -2.5 951,835 - -1.2 951,849 + -0.7 951,849 + -1.4 951,876 + +0.4 951,876 - +0.0 951,876 - -1.3 951,877 + +0.1 951,877 + -0.1 951,877 + +0.4 951,877 + +0.4 951,877 + -0.4 951,878 - +0.5 951,883 + +0.2 951,883 + -1.0 951,883 - -2.2 951,891 - -1.3 951,915 - +0.2 951,921 - -0.1 951,931 - -2.3 951,962 - -2.2 951,970 - -4.0 952,003 - -1.5 952,029 + -1.6
Or see this region's nucleotide sequence