Strain Fitness in Sphingobium sp. HT1-2 around GFF860

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
845,408	+				+0.3
845,408	+				-0.3
845,413	+				-0.2
845,423	+				-0.3
845,423	+				-0.9
845,423	+				-0.2
845,423	+				-0.8
845,423	+				+0.8
845,423	+				-1.1
845,423	+				-0.9
845,423	+				+0.0
845,423	+				+0.6
845,431	-				-0.4
845,431	-				+0.2
845,431	-				-0.1
845,431	-				+1.3
845,431	-				+0.9
845,431	-				-0.1
845,431	-				-0.6
845,431	-				+0.6
845,431	-				-1.0
845,431	-				-0.3
845,431	-				-1.3
845,431	-				-0.9
845,431	-				+0.2
845,431	-				-0.4
845,433	+				-2.1
845,433	+				+0.0
845,443	+				-0.5
845,446	-				+0.9
845,485	+				-0.6
845,493	-				-1.0
845,493	-				+0.6
845,526	-				-0.9
845,528	+				-1.4
845,533	+				+0.4
845,533	+				-1.4
845,533	+				-0.1
845,533	+				-0.7
845,541	-				-0.6
845,541	-				-1.4
845,541	-				+0.6
845,541	-				-1.8
845,541	-				+0.1
845,554	-				-1.1
845,568	+				-0.1
845,568	+				-0.3
845,568	+				+1.2
845,568	+				-0.4
845,568	+				-0.5
845,568	-				+0.2
845,571	-				-1.9
845,576	-				+0.7
845,576	-				+0.5
845,576	-				-0.1
845,576	-				+0.6
845,576	-				+0.6
845,576	-				-1.0
845,576	-				+0.6
845,601	+		GFF859	0.12	-1.0
845,609	-		GFF859	0.13	-2.4
845,626	-		GFF859	0.14	+0.5
845,652	-		GFF859	0.17	-0.6
845,679	+		GFF859	0.20	-1.3
845,679	+		GFF859	0.20	-0.4
845,679	+		GFF859	0.20	-1.7
845,679	+		GFF859	0.20	+0.0
845,679	+		GFF859	0.20	-1.7
845,679	+		GFF859	0.20	-0.1
845,679	+		GFF859	0.20	-2.2
845,679	+		GFF859	0.20	-0.5
845,679	+		GFF859	0.20	-1.2
845,679	+		GFF859	0.20	+0.4
845,682	-		GFF859	0.21	-0.8
845,687	-		GFF859	0.21	-1.5
845,687	-		GFF859	0.21	+0.7
845,687	-		GFF859	0.21	+1.1
845,687	-		GFF859	0.21	-0.9
845,692	-		GFF859	0.22	-0.4
845,694	+		GFF859	0.22	-1.4
845,694	+		GFF859	0.22	-0.7
845,704	+		GFF859	0.23	+0.2
845,704	+		GFF859	0.23	-0.8
845,713	-		GFF859	0.24	-2.5
845,717	+		GFF859	0.24	-1.4
845,717	+		GFF859	0.24	+0.2
845,726	-		GFF859	0.25	-0.7
845,732	+		GFF859	0.26	-0.8
845,732	+		GFF859	0.26	+0.5
845,740	-		GFF859	0.27	-0.6
845,742	+		GFF859	0.27	+1.3
845,742	+		GFF859	0.27	-0.3
845,744	-		GFF859	0.27	-1.6
845,747	+		GFF859	0.28	-1.9
845,747	+		GFF859	0.28	-2.0
845,747	+		GFF859	0.28	-0.1
845,747	+		GFF859	0.28	-0.1
845,747	+		GFF859	0.28	-2.0
845,747	+		GFF859	0.28	-0.2
845,747	+		GFF859	0.28	-0.6
845,747	+		GFF859	0.28	-2.4
845,750	-		GFF859	0.28	-0.7
845,755	-		GFF859	0.29	+0.5
845,755	-		GFF859	0.29	-1.4
845,755	-		GFF859	0.29	-2.2
845,780	-		GFF859	0.31	-0.4
845,796	+		GFF859	0.33	-0.0
845,796	+		GFF859	0.33	-0.2
845,801	+		GFF859	0.34	-0.2
845,801	+		GFF859	0.34	-1.2
845,801	+		GFF859	0.34	-0.1
845,801	+		GFF859	0.34	+0.4
845,801	+		GFF859	0.34	+0.2
845,804	-		GFF859	0.34	-0.4
845,804	-		GFF859	0.34	+0.5
845,804	-		GFF859	0.34	+1.1
845,806	+		GFF859	0.34	+0.1
845,806	+		GFF859	0.34	-1.9
845,806	+		GFF859	0.34	-0.8
845,806	+		GFF859	0.34	-2.4
845,807	-		GFF859	0.34	-0.6
845,809	-		GFF859	0.34	+0.6
845,809	-		GFF859	0.34	-0.2
845,809	-		GFF859	0.34	-2.2
845,809	-		GFF859	0.34	-0.6
845,811	+		GFF859	0.35	-0.1
845,814	-		GFF859	0.35	+1.2
845,814	-		GFF859	0.35	+1.9
845,828	-		GFF859	0.37	+0.1
845,828	-		GFF859	0.37	-0.5
845,831	-		GFF859	0.37	-1.1
845,874	+		GFF859	0.42	-0.6
845,874	+		GFF859	0.42	-0.2
845,874	+		GFF859	0.42	-1.0
845,874	+		GFF859	0.42	-0.7
845,882	-		GFF859	0.42	-1.4
845,882	-		GFF859	0.42	+0.3
845,882	-		GFF859	0.42	-0.8
845,882	-		GFF859	0.42	-2.3
845,884	-		GFF859	0.43	-1.7
845,926	+		GFF859	0.47	-0.7
845,926	+		GFF859	0.47	+0.9
845,935	+		GFF859	0.48	-0.5
845,936	+		GFF859	0.48	+0.6
845,943	-		GFF859	0.49	-0.7
845,944	-		GFF859	0.49	+0.6
845,944	-		GFF859	0.49	-0.6
845,964	+		GFF859	0.51	-0.8
845,964	+		GFF859	0.51	-1.7
845,964	+		GFF859	0.51	+0.3
845,964	+		GFF859	0.51	+0.8
845,991	+		GFF859	0.54	-0.6
846,004	-		GFF859	0.56	+0.6
846,026	-		GFF859	0.58	+1.0
846,026	-		GFF859	0.58	+0.1
846,071	-		GFF859	0.63	-1.4
846,073	+		GFF859	0.63	-0.1
846,079	-		GFF859	0.64	+1.1
846,081	-		GFF859	0.64	+0.5
846,081	-		GFF859	0.64	-0.9
846,081	-		GFF859	0.64	-0.7
846,090	+		GFF859	0.65	+0.7
846,091	-		GFF859	0.65	+0.0
846,106	-		GFF859	0.67	+0.4
846,130	+		GFF859	0.70	-1.1
846,131	-		GFF859	0.70	-1.9
846,152	+		GFF859	0.72	-0.3
846,160	-		GFF859	0.73	+0.1
846,160	-		GFF859	0.73	-1.8
846,164	+		GFF859	0.73	-1.4
846,164	+		GFF859	0.73	-0.7
846,164	+		GFF859	0.73	+0.7
846,165	-		GFF859	0.73	-1.3
846,165	-		GFF859	0.73	-0.9
846,165	-		GFF859	0.73	-1.3
846,165	-		GFF859	0.73	-2.5
846,172	-		GFF859	0.74	-0.0
846,193	-		GFF859	0.76	-1.2
846,197	+		GFF859	0.77	-0.6
846,197	+		GFF859	0.77	-0.6
846,212	-		GFF859	0.78	+0.6
846,225	+		GFF859	0.80	-0.7
846,228	-		GFF859	0.80	-0.7
846,228	-		GFF859	0.80	-0.0
846,246	+		GFF859	0.82	+0.4
846,296	-		GFF859	0.88	-0.6
846,302	-		GFF859	0.88	-0.9
846,303	-		GFF859	0.88	-0.6
846,307	-		GFF859	0.89	+0.6
846,314	+		GFF859	0.90	-1.3
846,314	+		GFF859	0.90	-0.6
846,314	+		GFF859	0.90	-0.3
846,355	+				-2.0
846,355	+				-1.9
846,363	-				-1.7
846,388	-				+1.8
846,390	-				-1.0
846,402	+				-1.4
846,405	-				-0.4
846,415	+				+0.1
846,448	+				+0.2
846,456	-				+0.0
846,456	-				+0.3
846,471	-				+0.9
846,472	+				-0.7
846,507	+				-0.5
846,507	+				+1.5
846,520	+				-0.9
846,528	-				-0.3
846,550	-		GFF860	0.11	-1.6
846,550	-		GFF860	0.11	+0.4
846,560	-		GFF860	0.12	+0.3
846,561	+		GFF860	0.12	+0.1
846,561	+		GFF860	0.12	+0.8
846,561	+		GFF860	0.12	-0.9
846,561	+		GFF860	0.12	+0.0
846,569	-		GFF860	0.13	+0.1
846,569	-		GFF860	0.13	-0.3
846,585	-		GFF860	0.14	+0.8
846,587	+		GFF860	0.14	-0.2
846,592	+		GFF860	0.14	-0.2
846,592	+		GFF860	0.14	-0.8
846,592	+		GFF860	0.14	-0.9
846,592	+		GFF860	0.14	-0.0
846,592	+		GFF860	0.14	-0.4
846,595	-		GFF860	0.15	+0.3
846,595	-		GFF860	0.15	+0.3
846,600	-		GFF860	0.15	-0.4
846,600	-		GFF860	0.15	-0.7
846,600	-		GFF860	0.15	-0.9
846,600	-		GFF860	0.15	-0.6
846,600	-		GFF860	0.15	+0.5
846,600	-		GFF860	0.15	-1.0
846,663	+		GFF860	0.20	-1.1
846,663	+		GFF860	0.20	+0.2
846,666	-		GFF860	0.20	-1.4
846,666	-		GFF860	0.20	-1.4
846,676	+		GFF860	0.21	-1.0
846,682	-		GFF860	0.21	-0.7
846,695	+		GFF860	0.22	-0.6
846,749	+		GFF860	0.27	-0.2
846,755	+		GFF860	0.27	+1.1
846,757	-		GFF860	0.27	-1.6
846,771	+		GFF860	0.28	+0.3
846,793	+		GFF860	0.30	+0.7
846,801	-		GFF860	0.31	+0.7
846,802	+		GFF860	0.31	-0.1
846,810	-		GFF860	0.31	+0.6
846,825	+		GFF860	0.32	+1.6
846,838	+		GFF860	0.33	-1.9
846,838	+		GFF860	0.33	-1.0
846,838	+		GFF860	0.33	+1.4
846,839	+		GFF860	0.34	+0.3
846,843	+		GFF860	0.34	-1.7
846,843	+		GFF860	0.34	-0.2
846,846	-		GFF860	0.34	-0.7
846,846	-		GFF860	0.34	-0.7
846,848	+		GFF860	0.34	+1.4
846,853	+		GFF860	0.35	-0.9
846,853	+		GFF860	0.35	+0.1
846,853	+		GFF860	0.35	-3.3
846,853	+		GFF860	0.35	+0.0
846,853	+		GFF860	0.35	-0.1
846,856	-		GFF860	0.35	+0.0
846,856	-		GFF860	0.35	-2.3
846,856	-		GFF860	0.35	+0.5
846,856	-		GFF860	0.35	+1.6
846,861	-		GFF860	0.35	-0.7
846,861	-		GFF860	0.35	-1.8
846,861	-		GFF860	0.35	-1.6
846,861	-		GFF860	0.35	-0.8
846,915	+		GFF860	0.39	-1.4
846,916	+		GFF860	0.40	-0.1
846,917	+		GFF860	0.40	-1.7
846,921	+		GFF860	0.40	-0.0
846,923	-		GFF860	0.40	-0.2
846,929	+		GFF860	0.41	+0.1
846,937	-		GFF860	0.41	-0.6
846,942	-		GFF860	0.42	+0.6
846,975	+		GFF860	0.44	-3.0
847,000	-		GFF860	0.46	-0.9
847,006	+		GFF860	0.46	-1.5
847,006	+		GFF860	0.46	+0.3
847,014	-		GFF860	0.47	+0.4
847,014	-		GFF860	0.47	-2.1
847,055	-		GFF860	0.50	-0.4
847,062	-		GFF860	0.51	+0.0
847,063	+		GFF860	0.51	+0.1
847,103	+		GFF860	0.54	-1.4
847,103	-		GFF860	0.54	+0.3
847,128	+		GFF860	0.56	+1.6
847,128	+		GFF860	0.56	-1.9
847,151	+		GFF860	0.58	+0.0
847,153	+		GFF860	0.58	-0.7
847,153	+		GFF860	0.58	+1.4
847,153	+		GFF860	0.58	-0.1
847,153	+		GFF860	0.58	-0.7
847,153	+		GFF860	0.58	-0.7
847,158	+		GFF860	0.58	-0.7
847,159	-		GFF860	0.58	-0.9
847,161	-		GFF860	0.58	-1.5
847,161	-		GFF860	0.58	+1.5
847,161	-		GFF860	0.58	+0.6
847,161	-		GFF860	0.58	+0.0
847,161	-		GFF860	0.58	-1.1
847,161	-		GFF860	0.58	+0.5
847,172	+		GFF860	0.59	+0.6
847,182	+		GFF860	0.60	-0.8
847,185	-		GFF860	0.60	+0.4
847,185	-		GFF860	0.60	+0.6
847,187	+		GFF860	0.60	-0.2
847,187	+		GFF860	0.60	-0.3
847,187	+		GFF860	0.60	+1.0
847,190	-		GFF860	0.61	-0.3
847,190	-		GFF860	0.61	-2.4
847,190	-		GFF860	0.61	-0.7
847,190	-		GFF860	0.61	-1.1
847,190	-		GFF860	0.61	+0.6
847,195	-		GFF860	0.61	+0.5
847,195	-		GFF860	0.61	-0.7
847,195	-		GFF860	0.61	-0.5
847,195	-		GFF860	0.61	+0.1
847,195	-		GFF860	0.61	-1.7
847,242	+		GFF860	0.65	+0.7
847,253	-		GFF860	0.66	+0.9
847,255	+		GFF860	0.66	-2.4
847,268	+		GFF860	0.67	-0.8
847,269	+		GFF860	0.67	+0.1
847,269	+		GFF860	0.67	-0.5
847,277	+		GFF860	0.67	-0.8
847,277	-		GFF860	0.67	-0.2
847,278	-		GFF860	0.68	-0.6
847,282	+		GFF860	0.68	-0.6
847,282	+		GFF860	0.68	+0.2
847,282	+		GFF860	0.68	-0.5
847,282	+		GFF860	0.68	+0.7
847,282	+		GFF860	0.68	-0.6
847,282	+		GFF860	0.68	-1.8
847,285	-		GFF860	0.68	-1.2
847,290	-		GFF860	0.68	+0.3
847,290	-		GFF860	0.68	-1.1
847,290	-		GFF860	0.68	-1.8
847,290	-		GFF860	0.68	-0.6
847,290	-		GFF860	0.68	+0.2
847,308	+		GFF860	0.70	-1.7
847,316	+		GFF860	0.70	-0.8
847,325	+		GFF860	0.71	-0.7
847,325	+		GFF860	0.71	-0.4
847,326	+		GFF860	0.71	-0.7
847,327	+		GFF860	0.71	-1.4
847,334	-		GFF860	0.72	+0.0
847,366	-		GFF860	0.74	-1.4
847,368	+		GFF860	0.74	+0.3
847,374	-		GFF860	0.75	+0.7
847,376	-		GFF860	0.75	-0.2
847,378	-		GFF860	0.75	-2.2
847,385	-		GFF860	0.76	-0.7
847,403	+		GFF860	0.77	-2.1
847,409	-		GFF860	0.78	+0.3
847,410	+		GFF860	0.78	+0.1
847,413	-		GFF860	0.78	-0.1
847,415	+		GFF860	0.78	-0.0
847,441	+		GFF860	0.80	+0.4
847,515	+		GFF860	0.86	-0.2
847,523	-		GFF860	0.86	+0.1
847,532	-		GFF860	0.87	+0.1
847,535	+		GFF860	0.87	-0.9
847,566	-		GFF860	0.90	-2.1
847,576	+				-0.7
847,610	-				-0.5
847,617	+				-1.3
847,622	+				+0.6
847,632	+				-1.9
847,632	+				+0.6
847,647	-				+0.2
847,647	-				-1.2
847,710	+				+0.5
847,718	-				+0.2
847,718	-				-1.0
847,738	+				+0.4
847,738	+				-1.7
847,774	+				+0.2
847,774	+				-0.4
847,774	+				+0.4
847,774	+				+0.4
847,782	-				-0.6
847,782	-				-2.1
847,782	-				+0.9
847,782	-				-0.4
847,782	-				+0.6
847,782	-				-0.7
847,782	-				-1.4
847,782	-				-0.6
847,782	-				-0.1
847,796	+				-1.0
847,796	+				+1.0
847,809	-				+0.0
847,829	+				-1.8
847,829	+				-1.3
847,891	+		GFF861	0.12	-2.0
847,899	-		GFF861	0.12	-0.6
847,900	+		GFF861	0.13	-0.7
847,900	+		GFF861	0.13	-1.8
847,900	+		GFF861	0.13	-0.1
847,908	-		GFF861	0.13	+0.4
847,908	-		GFF861	0.13	-0.4
847,919	+		GFF861	0.14	-1.4
847,995	-		GFF861	0.22	-2.3
848,020	+		GFF861	0.24	+0.1
848,027	-		GFF861	0.25	+0.6
848,028	-		GFF861	0.25	+0.2
848,033	-		GFF861	0.25	-0.7
848,045	+		GFF861	0.26	-1.4
848,050	-		GFF861	0.27	-0.8
848,067	+		GFF861	0.28	-1.8
848,067	+		GFF861	0.28	+1.1
848,068	+		GFF861	0.28	-0.8
848,072	-		GFF861	0.29	+0.0
848,075	-		GFF861	0.29	+0.1
848,083	-		GFF861	0.30	-0.5
848,088	+		GFF861	0.30	+0.0
848,097	+		GFF861	0.31	+1.0
848,107	+		GFF861	0.32	+0.3
848,115	-		GFF861	0.33	-1.8
848,121	+		GFF861	0.33	+0.3
848,131	+		GFF861	0.34	+0.0
848,162	+		GFF861	0.37	-0.8
848,166	+		GFF861	0.38	+1.0
848,169	-		GFF861	0.38	+0.8
848,176	+		GFF861	0.38	-0.0
848,178	+		GFF861	0.39	-1.1
848,202	+		GFF861	0.41	+1.1
848,206	+		GFF861	0.41	-1.1
848,218	+		GFF861	0.42	-0.7
848,225	+		GFF861	0.43	-0.7
848,225	+		GFF861	0.43	+0.2
848,260	+		GFF861	0.46	+0.1
848,268	-		GFF861	0.47	-1.1
848,270	-		GFF861	0.47	+0.2
848,272	+		GFF861	0.48	-0.7
848,280	-		GFF861	0.48	+0.1
848,340	+		GFF861	0.54	-1.4
848,344	-		GFF861	0.54	+0.5
848,345	+		GFF861	0.54	+1.1
848,345	+		GFF861	0.54	-0.3
848,348	-		GFF861	0.55	-2.4
848,348	-		GFF861	0.55	-0.7
848,352	+		GFF861	0.55	-0.2
848,362	+		GFF861	0.56	-1.3
848,368	+		GFF861	0.57	-0.5
848,372	+		GFF861	0.57	+0.2
848,385	+		GFF861	0.58	-0.6
848,385	+		GFF861	0.58	+0.0
848,390	+		GFF861	0.59	-1.1
848,393	-		GFF861	0.59	-0.1
848,393	-		GFF861	0.59	-1.7
848,393	-		GFF861	0.59	+1.1
848,416	-		GFF861	0.61	+0.0
848,431	+		GFF861	0.62	+0.4
848,455	+		GFF861	0.65	-0.0
848,463	-		GFF861	0.65	-1.2
848,472	+		GFF861	0.66	-1.9
848,472	+		GFF861	0.66	-1.3
848,472	+		GFF861	0.66	-0.5
848,473	-		GFF861	0.66	-0.0
848,480	-		GFF861	0.67	-0.1
848,480	-		GFF861	0.67	-0.2
848,480	-		GFF861	0.67	-0.6
848,514	-		GFF861	0.70	+0.8
848,515	+		GFF861	0.70	-0.4
848,523	-		GFF861	0.71	+0.5
848,530	-		GFF861	0.72	-1.1
848,543	-		GFF861	0.73	-2.1
848,545	-		GFF861	0.73	-1.1
848,569	-		GFF861	0.75	+0.8
848,587	-		GFF861	0.77	+0.2
848,588	-		GFF861	0.77	+0.6
848,632	-		GFF861	0.81	+0.3
848,632	-		GFF861	0.81	-0.6
848,661	+		GFF861	0.84	-0.6
848,662	+		GFF861	0.84	-0.5
848,668	+		GFF861	0.85	+0.5
848,668	+		GFF861	0.85	-0.1
848,668	+		GFF861	0.85	+0.1
848,668	+		GFF861	0.85	+0.5
848,668	+		GFF861	0.85	-0.5
848,676	-		GFF861	0.85	+0.0
848,690	+		GFF861	0.87	-0.4
848,691	-		GFF861	0.87	+0.0
848,691	-		GFF861	0.87	-2.8