Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF828 and GFF829 overlap by 4 nucleotides GFF829 and GFF830 overlap by 1 nucleotides
GFF828 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21), at 815,856 to 816,869
GFF828
GFF829 - hypothetical protein, at 816,866 to 817,273
GFF829
GFF830 - Outer membrane vitamin B12 receptor BtuB, at 817,273 to 819,228
GFF830
Position (kb) 816
817
818 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 815.890 kb on - strand at 816.012 kb on + strand, within GFF828 at 816.069 kb on + strand, within GFF828 at 816.159 kb on - strand, within GFF828 at 816.161 kb on - strand, within GFF828 at 816.225 kb on - strand, within GFF828 at 816.306 kb on - strand, within GFF828 at 816.308 kb on + strand, within GFF828 at 816.318 kb on + strand, within GFF828 at 816.326 kb on - strand, within GFF828 at 816.332 kb on + strand, within GFF828 at 816.333 kb on + strand, within GFF828 at 816.460 kb on + strand, within GFF828 at 816.489 kb on - strand, within GFF828 at 816.765 kb on + strand, within GFF828 at 816.773 kb on - strand at 816.801 kb on + strand at 816.804 kb on - strand at 816.892 kb on + strand at 816.892 kb on + strand at 816.892 kb on + strand at 816.900 kb on - strand at 816.929 kb on - strand, within GFF829 at 816.929 kb on - strand, within GFF829 at 816.929 kb on - strand, within GFF829 at 817.014 kb on + strand, within GFF829 at 817.014 kb on + strand, within GFF829 at 817.022 kb on - strand, within GFF829 at 817.022 kb on - strand, within GFF829 at 817.023 kb on - strand, within GFF829 at 817.027 kb on - strand, within GFF829 at 817.035 kb on - strand, within GFF829 at 817.035 kb on - strand, within GFF829 at 817.035 kb on - strand, within GFF829 at 817.041 kb on + strand, within GFF829 at 817.043 kb on + strand, within GFF829 at 817.049 kb on - strand, within GFF829 at 817.068 kb on + strand, within GFF829 at 817.068 kb on + strand, within GFF829 at 817.068 kb on - strand, within GFF829 at 817.076 kb on - strand, within GFF829 at 817.093 kb on - strand, within GFF829 at 817.098 kb on + strand, within GFF829 at 817.103 kb on + strand, within GFF829 at 817.103 kb on + strand, within GFF829 at 817.103 kb on + strand, within GFF829 at 817.103 kb on + strand, within GFF829 at 817.103 kb on + strand, within GFF829 at 817.103 kb on + strand, within GFF829 at 817.103 kb on + strand, within GFF829 at 817.105 kb on - strand, within GFF829 at 817.105 kb on - strand, within GFF829 at 817.106 kb on - strand, within GFF829 at 817.106 kb on - strand, within GFF829 at 817.111 kb on - strand, within GFF829 at 817.111 kb on - strand, within GFF829 at 817.111 kb on - strand, within GFF829 at 817.111 kb on - strand, within GFF829 at 817.111 kb on - strand, within GFF829 at 817.111 kb on - strand, within GFF829 at 817.111 kb on - strand, within GFF829 at 817.111 kb on - strand, within GFF829 at 817.111 kb on - strand, within GFF829 at 817.132 kb on + strand, within GFF829 at 817.132 kb on + strand, within GFF829 at 817.132 kb on + strand, within GFF829 at 817.139 kb on + strand, within GFF829 at 817.139 kb on + strand, within GFF829 at 817.139 kb on + strand, within GFF829 at 817.139 kb on + strand, within GFF829 at 817.139 kb on + strand, within GFF829 at 817.139 kb on + strand, within GFF829 at 817.139 kb on + strand, within GFF829 at 817.139 kb on + strand, within GFF829 at 817.139 kb on + strand, within GFF829 at 817.139 kb on + strand, within GFF829 at 817.139 kb on + strand, within GFF829 at 817.139 kb on + strand, within GFF829 at 817.139 kb on + strand, within GFF829 at 817.139 kb on + strand, within GFF829 at 817.139 kb on + strand, within GFF829 at 817.139 kb on + strand, within GFF829 at 817.139 kb on + strand, within GFF829 at 817.139 kb on + strand, within GFF829 at 817.139 kb on + strand, within GFF829 at 817.139 kb on + strand, within GFF829 at 817.139 kb on + strand, within GFF829 at 817.140 kb on - strand, within GFF829 at 817.140 kb on - strand, within GFF829 at 817.140 kb on - strand, within GFF829 at 817.146 kb on + strand, within GFF829 at 817.146 kb on + strand, within GFF829 at 817.147 kb on - strand, within GFF829 at 817.147 kb on - strand, within GFF829 at 817.147 kb on - strand, within GFF829 at 817.147 kb on - strand, within GFF829 at 817.147 kb on - strand, within GFF829 at 817.147 kb on - strand, within GFF829 at 817.147 kb on - strand, within GFF829 at 817.147 kb on - strand, within GFF829 at 817.147 kb on - strand, within GFF829 at 817.147 kb on - strand, within GFF829 at 817.147 kb on - strand, within GFF829 at 817.147 kb on - strand, within GFF829 at 817.147 kb on - strand, within GFF829 at 817.147 kb on - strand, within GFF829 at 817.147 kb on - strand, within GFF829 at 817.147 kb on - strand, within GFF829 at 817.147 kb on - strand, within GFF829 at 817.147 kb on - strand, within GFF829 at 817.147 kb on - strand, within GFF829 at 817.147 kb on - strand, within GFF829 at 817.147 kb on - strand, within GFF829 at 817.147 kb on - strand, within GFF829 at 817.147 kb on - strand, within GFF829 at 817.147 kb on - strand, within GFF829 at 817.147 kb on - strand, within GFF829 at 817.159 kb on - strand, within GFF829 at 817.168 kb on + strand, within GFF829 at 817.168 kb on + strand, within GFF829 at 817.168 kb on + strand, within GFF829 at 817.176 kb on - strand, within GFF829 at 817.207 kb on - strand, within GFF829 at 817.221 kb on + strand, within GFF829 at 817.234 kb on - strand at 817.235 kb on - strand at 817.235 kb on - strand at 817.251 kb on - strand at 817.337 kb on + strand at 817.373 kb on + strand at 817.422 kb on + strand at 817.422 kb on + strand at 817.422 kb on + strand at 817.422 kb on + strand at 817.439 kb on + strand at 817.470 kb on + strand, within GFF830 at 817.470 kb on + strand, within GFF830 at 817.470 kb on + strand, within GFF830 at 817.470 kb on + strand, within GFF830 at 817.470 kb on + strand, within GFF830 at 817.475 kb on + strand, within GFF830 at 817.475 kb on + strand, within GFF830 at 817.478 kb on - strand, within GFF830 at 817.488 kb on - strand, within GFF830 at 817.488 kb on - strand, within GFF830 at 817.511 kb on + strand, within GFF830 at 817.515 kb on + strand, within GFF830 at 817.516 kb on + strand, within GFF830 at 817.519 kb on - strand, within GFF830 at 817.523 kb on - strand, within GFF830 at 817.551 kb on - strand, within GFF830 at 817.609 kb on + strand, within GFF830 at 817.615 kb on + strand, within GFF830 at 817.639 kb on - strand, within GFF830 at 817.640 kb on + strand, within GFF830 at 817.648 kb on - strand, within GFF830 at 817.669 kb on - strand, within GFF830 at 817.673 kb on + strand, within GFF830 at 817.676 kb on - strand, within GFF830 at 817.676 kb on - strand, within GFF830 at 817.676 kb on - strand, within GFF830 at 817.676 kb on - strand, within GFF830 at 817.737 kb on + strand, within GFF830 at 817.737 kb on + strand, within GFF830 at 817.745 kb on - strand, within GFF830 at 817.745 kb on - strand, within GFF830 at 817.750 kb on - strand, within GFF830 at 817.755 kb on - strand, within GFF830 at 817.796 kb on + strand, within GFF830 at 817.796 kb on + strand, within GFF830 at 817.796 kb on + strand, within GFF830 at 817.796 kb on + strand, within GFF830 at 817.796 kb on + strand, within GFF830 at 817.796 kb on + strand, within GFF830 at 817.796 kb on + strand, within GFF830 at 817.799 kb on - strand, within GFF830 at 817.804 kb on - strand, within GFF830 at 817.804 kb on - strand, within GFF830 at 817.804 kb on - strand, within GFF830 at 817.804 kb on - strand, within GFF830 at 817.804 kb on - strand, within GFF830 at 817.804 kb on - strand, within GFF830 at 817.806 kb on + strand, within GFF830 at 817.816 kb on + strand, within GFF830 at 817.874 kb on + strand, within GFF830 at 817.874 kb on - strand, within GFF830 at 817.954 kb on + strand, within GFF830 at 817.979 kb on - strand, within GFF830 at 817.979 kb on - strand, within GFF830 at 817.979 kb on - strand, within GFF830 at 817.991 kb on + strand, within GFF830 at 818.057 kb on + strand, within GFF830 at 818.067 kb on + strand, within GFF830 at 818.090 kb on + strand, within GFF830 at 818.108 kb on - strand, within GFF830 at 818.108 kb on - strand, within GFF830 at 818.126 kb on - strand, within GFF830 at 818.147 kb on - strand, within GFF830 at 818.207 kb on + strand, within GFF830 at 818.207 kb on + strand, within GFF830 at 818.215 kb on - strand, within GFF830 at 818.230 kb on - strand, within GFF830 at 818.256 kb on - strand, within GFF830 at 818.256 kb on - strand, within GFF830
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 815,890 - -1.0 816,012 + GFF828 0.15 -2.5 816,069 + GFF828 0.21 -1.2 816,159 - GFF828 0.30 -1.0 816,161 - GFF828 0.30 -0.9 816,225 - GFF828 0.36 -2.1 816,306 - GFF828 0.44 -0.6 816,308 + GFF828 0.45 +0.2 816,318 + GFF828 0.46 -0.0 816,326 - GFF828 0.46 -1.4 816,332 + GFF828 0.47 -2.2 816,333 + GFF828 0.47 -1.3 816,460 + GFF828 0.60 -2.4 816,489 - GFF828 0.62 -1.5 816,765 + GFF828 0.90 -0.4 816,773 - -2.0 816,801 + -2.1 816,804 - -1.7 816,892 + +0.4 816,892 + +0.1 816,892 + +1.7 816,900 - -1.3 816,929 - GFF829 0.15 +1.7 816,929 - GFF829 0.15 -0.6 816,929 - GFF829 0.15 -1.1 817,014 + GFF829 0.36 -1.1 817,014 + GFF829 0.36 +1.3 817,022 - GFF829 0.38 +2.2 817,022 - GFF829 0.38 +2.2 817,023 - GFF829 0.38 -0.8 817,027 - GFF829 0.39 +0.8 817,035 - GFF829 0.41 +0.3 817,035 - GFF829 0.41 +0.1 817,035 - GFF829 0.41 -1.1 817,041 + GFF829 0.43 +0.2 817,043 + GFF829 0.43 -1.8 817,049 - GFF829 0.45 +0.3 817,068 + GFF829 0.50 -0.9 817,068 + GFF829 0.50 +1.3 817,068 - GFF829 0.50 -0.6 817,076 - GFF829 0.51 -0.2 817,093 - GFF829 0.56 -1.3 817,098 + GFF829 0.57 -0.4 817,103 + GFF829 0.58 +0.7 817,103 + GFF829 0.58 -0.0 817,103 + GFF829 0.58 -1.0 817,103 + GFF829 0.58 -1.2 817,103 + GFF829 0.58 -0.3 817,103 + GFF829 0.58 -0.7 817,103 + GFF829 0.58 +0.9 817,105 - GFF829 0.59 -0.4 817,105 - GFF829 0.59 +0.9 817,106 - GFF829 0.59 +0.6 817,106 - GFF829 0.59 -1.1 817,111 - GFF829 0.60 +0.9 817,111 - GFF829 0.60 +0.5 817,111 - GFF829 0.60 -1.8 817,111 - GFF829 0.60 +0.2 817,111 - GFF829 0.60 -1.7 817,111 - GFF829 0.60 -0.1 817,111 - GFF829 0.60 -0.9 817,111 - GFF829 0.60 -1.4 817,111 - GFF829 0.60 -0.5 817,132 + GFF829 0.65 -1.1 817,132 + GFF829 0.65 -2.1 817,132 + GFF829 0.65 -0.2 817,139 + GFF829 0.67 -1.1 817,139 + GFF829 0.67 -0.6 817,139 + GFF829 0.67 -1.4 817,139 + GFF829 0.67 -1.6 817,139 + GFF829 0.67 -0.1 817,139 + GFF829 0.67 -1.7 817,139 + GFF829 0.67 -0.2 817,139 + GFF829 0.67 +0.1 817,139 + GFF829 0.67 +1.8 817,139 + GFF829 0.67 -0.6 817,139 + GFF829 0.67 -1.3 817,139 + GFF829 0.67 -0.3 817,139 + GFF829 0.67 +0.0 817,139 + GFF829 0.67 -1.2 817,139 + GFF829 0.67 -0.2 817,139 + GFF829 0.67 -0.2 817,139 + GFF829 0.67 -1.8 817,139 + GFF829 0.67 -0.3 817,139 + GFF829 0.67 -1.2 817,139 + GFF829 0.67 +0.2 817,139 + GFF829 0.67 +1.7 817,140 - GFF829 0.67 -0.6 817,140 - GFF829 0.67 -1.2 817,140 - GFF829 0.67 -1.3 817,146 + GFF829 0.69 +1.2 817,146 + GFF829 0.69 +0.7 817,147 - GFF829 0.69 +0.2 817,147 - GFF829 0.69 +1.1 817,147 - GFF829 0.69 +0.4 817,147 - GFF829 0.69 -0.3 817,147 - GFF829 0.69 +0.1 817,147 - GFF829 0.69 -0.4 817,147 - GFF829 0.69 +0.1 817,147 - GFF829 0.69 +1.2 817,147 - GFF829 0.69 -1.2 817,147 - GFF829 0.69 +0.4 817,147 - GFF829 0.69 +0.4 817,147 - GFF829 0.69 -0.4 817,147 - GFF829 0.69 +0.2 817,147 - GFF829 0.69 +0.8 817,147 - GFF829 0.69 +0.3 817,147 - GFF829 0.69 -0.1 817,147 - GFF829 0.69 +0.7 817,147 - GFF829 0.69 +0.2 817,147 - GFF829 0.69 -0.4 817,147 - GFF829 0.69 +0.6 817,147 - GFF829 0.69 +1.2 817,147 - GFF829 0.69 -1.0 817,147 - GFF829 0.69 -1.5 817,147 - GFF829 0.69 -0.3 817,147 - GFF829 0.69 +1.8 817,159 - GFF829 0.72 -1.0 817,168 + GFF829 0.74 -1.1 817,168 + GFF829 0.74 -0.5 817,168 + GFF829 0.74 +0.3 817,176 - GFF829 0.76 -0.3 817,207 - GFF829 0.84 +0.3 817,221 + GFF829 0.87 +0.2 817,234 - -0.2 817,235 - +1.9 817,235 - +1.1 817,251 - +0.2 817,337 + -0.6 817,373 + -0.1 817,422 + +0.1 817,422 + +0.1 817,422 + -1.3 817,422 + +0.3 817,439 + +0.2 817,470 + GFF830 0.10 -0.1 817,470 + GFF830 0.10 -0.4 817,470 + GFF830 0.10 -2.0 817,470 + GFF830 0.10 +0.5 817,470 + GFF830 0.10 -0.3 817,475 + GFF830 0.10 -0.7 817,475 + GFF830 0.10 +0.3 817,478 - GFF830 0.10 -0.4 817,488 - GFF830 0.11 +0.8 817,488 - GFF830 0.11 +1.0 817,511 + GFF830 0.12 -1.0 817,515 + GFF830 0.12 -0.2 817,516 + GFF830 0.12 -1.3 817,519 - GFF830 0.13 -0.4 817,523 - GFF830 0.13 -1.8 817,551 - GFF830 0.14 -0.1 817,609 + GFF830 0.17 -0.5 817,615 + GFF830 0.17 +0.2 817,639 - GFF830 0.19 +1.8 817,640 + GFF830 0.19 +1.1 817,648 - GFF830 0.19 +0.3 817,669 - GFF830 0.20 +1.3 817,673 + GFF830 0.20 +0.7 817,676 - GFF830 0.21 +1.2 817,676 - GFF830 0.21 +1.2 817,676 - GFF830 0.21 -0.3 817,676 - GFF830 0.21 -0.3 817,737 + GFF830 0.24 -1.8 817,737 + GFF830 0.24 -2.6 817,745 - GFF830 0.24 +0.7 817,745 - GFF830 0.24 -0.4 817,750 - GFF830 0.24 +2.2 817,755 - GFF830 0.25 +1.2 817,796 + GFF830 0.27 -0.2 817,796 + GFF830 0.27 -0.6 817,796 + GFF830 0.27 -1.0 817,796 + GFF830 0.27 -0.3 817,796 + GFF830 0.27 -0.7 817,796 + GFF830 0.27 +2.6 817,796 + GFF830 0.27 -0.6 817,799 - GFF830 0.27 -0.8 817,804 - GFF830 0.27 -0.2 817,804 - GFF830 0.27 +0.7 817,804 - GFF830 0.27 +2.0 817,804 - GFF830 0.27 +0.5 817,804 - GFF830 0.27 -0.7 817,804 - GFF830 0.27 -0.1 817,806 + GFF830 0.27 -2.1 817,816 + GFF830 0.28 -2.0 817,874 + GFF830 0.31 +0.7 817,874 - GFF830 0.31 -2.0 817,954 + GFF830 0.35 -2.8 817,979 - GFF830 0.36 -1.4 817,979 - GFF830 0.36 +0.2 817,979 - GFF830 0.36 -4.6 817,991 + GFF830 0.37 +0.7 818,057 + GFF830 0.40 +0.1 818,067 + GFF830 0.41 -2.0 818,090 + GFF830 0.42 +0.7 818,108 - GFF830 0.43 -0.2 818,108 - GFF830 0.43 -1.0 818,126 - GFF830 0.44 -1.4 818,147 - GFF830 0.45 +0.6 818,207 + GFF830 0.48 -1.5 818,207 + GFF830 0.48 -0.4 818,215 - GFF830 0.48 +1.2 818,230 - GFF830 0.49 +0.9 818,256 - GFF830 0.50 +0.2 818,256 - GFF830 0.50 -0.2
Or see this region's nucleotide sequence