Strain Fitness in Sphingobium sp. HT1-2 around GFF545

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF544 and GFF545 are separated by 38 nucleotidesGFF545 and GFF546 overlap by 1 nucleotides GFF544 - Xaa-Pro dipeptidase family enzyme, at 539,949 to 541,289 GFF544 GFF545 - 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39), at 541,328 to 542,365 GFF545 GFF546 - Acetaldehyde dehydrogenase, acetylating, (EC 1.2.1.10) in gene cluster for degradation of phenols, cresols, catechol, at 542,365 to 543,309 GFF546 Position (kb) 541 542 543Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 540.357 kb on - strand, within GFF544at 540.375 kb on + strand, within GFF544at 540.382 kb on - strand, within GFF544at 540.416 kb on + strand, within GFF544at 540.444 kb on + strand, within GFF544at 540.498 kb on - strand, within GFF544at 540.503 kb on - strand, within GFF544at 540.515 kb on - strand, within GFF544at 540.529 kb on + strand, within GFF544at 540.532 kb on - strand, within GFF544at 540.579 kb on + strand, within GFF544at 540.580 kb on + strand, within GFF544at 540.588 kb on - strand, within GFF544at 540.589 kb on - strand, within GFF544at 540.647 kb on + strand, within GFF544at 540.672 kb on + strand, within GFF544at 540.685 kb on - strand, within GFF544at 540.706 kb on + strand, within GFF544at 540.726 kb on + strand, within GFF544at 540.734 kb on - strand, within GFF544at 540.767 kb on + strand, within GFF544at 540.772 kb on + strand, within GFF544at 540.784 kb on - strand, within GFF544at 540.796 kb on - strand, within GFF544at 540.815 kb on - strand, within GFF544at 540.815 kb on - strand, within GFF544at 540.815 kb on - strand, within GFF544at 540.822 kb on - strand, within GFF544at 540.822 kb on - strand, within GFF544at 540.832 kb on - strand, within GFF544at 540.832 kb on - strand, within GFF544at 540.858 kb on - strand, within GFF544at 540.860 kb on + strand, within GFF544at 540.888 kb on + strand, within GFF544at 540.907 kb on + strand, within GFF544at 540.916 kb on - strand, within GFF544at 540.942 kb on + strand, within GFF544at 540.944 kb on + strand, within GFF544at 540.955 kb on + strand, within GFF544at 540.965 kb on + strand, within GFF544at 540.996 kb on + strand, within GFF544at 540.999 kb on - strand, within GFF544at 541.009 kb on + strand, within GFF544at 541.009 kb on + strand, within GFF544at 541.044 kb on - strand, within GFF544at 541.050 kb on - strand, within GFF544at 541.056 kb on + strand, within GFF544at 541.056 kb on + strand, within GFF544at 541.064 kb on - strand, within GFF544at 541.087 kb on - strand, within GFF544at 541.110 kb on - strand, within GFF544at 541.136 kb on + strand, within GFF544at 541.136 kb on + strand, within GFF544at 541.149 kb on + strand, within GFF544at 541.202 kb on + strandat 541.253 kb on + strandat 541.263 kb on - strandat 541.280 kb on - strandat 541.292 kb on - strandat 541.302 kb on - strandat 541.302 kb on - strandat 541.325 kb on + strandat 541.327 kb on + strandat 541.327 kb on + strandat 541.327 kb on + strandat 541.346 kb on + strandat 541.412 kb on + strandat 541.421 kb on + strandat 541.446 kb on - strand, within GFF545at 541.500 kb on + strand, within GFF545at 541.510 kb on + strand, within GFF545at 541.518 kb on - strand, within GFF545at 541.544 kb on + strand, within GFF545at 541.544 kb on + strand, within GFF545at 541.544 kb on + strand, within GFF545at 541.552 kb on - strand, within GFF545at 541.552 kb on - strand, within GFF545at 541.552 kb on - strand, within GFF545at 541.580 kb on + strand, within GFF545at 541.607 kb on + strand, within GFF545at 541.607 kb on + strand, within GFF545at 541.614 kb on - strand, within GFF545at 541.640 kb on - strand, within GFF545at 541.640 kb on - strand, within GFF545at 541.653 kb on + strand, within GFF545at 541.653 kb on + strand, within GFF545at 541.663 kb on + strand, within GFF545at 541.663 kb on + strand, within GFF545at 541.663 kb on + strand, within GFF545at 541.671 kb on - strand, within GFF545at 541.684 kb on + strand, within GFF545at 541.709 kb on + strand, within GFF545at 541.717 kb on - strand, within GFF545at 541.751 kb on + strand, within GFF545at 541.751 kb on + strand, within GFF545at 541.751 kb on + strand, within GFF545at 541.751 kb on + strand, within GFF545at 541.751 kb on + strand, within GFF545at 541.751 kb on + strand, within GFF545at 541.751 kb on + strand, within GFF545at 541.757 kb on - strand, within GFF545at 541.759 kb on - strand, within GFF545at 541.759 kb on - strand, within GFF545at 541.759 kb on - strand, within GFF545at 541.785 kb on + strand, within GFF545at 541.793 kb on - strand, within GFF545at 541.799 kb on + strand, within GFF545at 541.799 kb on + strand, within GFF545at 541.799 kb on + strand, within GFF545at 541.799 kb on + strand, within GFF545at 541.799 kb on + strand, within GFF545at 541.799 kb on + strand, within GFF545at 541.799 kb on + strand, within GFF545at 541.799 kb on + strand, within GFF545at 541.807 kb on - strand, within GFF545at 541.807 kb on - strand, within GFF545at 541.807 kb on - strand, within GFF545at 541.807 kb on - strand, within GFF545at 541.807 kb on - strand, within GFF545at 541.807 kb on - strand, within GFF545at 541.807 kb on - strand, within GFF545at 541.807 kb on - strand, within GFF545at 541.807 kb on - strand, within GFF545at 541.807 kb on - strand, within GFF545at 541.807 kb on - strand, within GFF545at 541.807 kb on - strand, within GFF545at 541.827 kb on - strand, within GFF545at 541.843 kb on + strand, within GFF545at 541.843 kb on + strand, within GFF545at 541.851 kb on - strand, within GFF545at 541.893 kb on + strand, within GFF545at 541.893 kb on + strand, within GFF545at 541.901 kb on - strand, within GFF545at 541.901 kb on - strand, within GFF545at 541.906 kb on - strand, within GFF545at 541.946 kb on - strand, within GFF545at 541.959 kb on + strand, within GFF545at 541.959 kb on + strand, within GFF545at 541.959 kb on + strand, within GFF545at 541.959 kb on + strand, within GFF545at 541.959 kb on + strand, within GFF545at 541.966 kb on - strand, within GFF545at 541.967 kb on - strand, within GFF545at 541.967 kb on - strand, within GFF545at 541.967 kb on - strand, within GFF545at 541.969 kb on + strand, within GFF545at 541.980 kb on + strand, within GFF545at 542.040 kb on - strand, within GFF545at 542.050 kb on + strand, within GFF545at 542.050 kb on + strand, within GFF545at 542.050 kb on + strand, within GFF545at 542.050 kb on + strand, within GFF545at 542.050 kb on + strand, within GFF545at 542.058 kb on - strand, within GFF545at 542.058 kb on - strand, within GFF545at 542.111 kb on - strand, within GFF545at 542.111 kb on - strand, within GFF545at 542.113 kb on - strand, within GFF545at 542.140 kb on + strand, within GFF545at 542.154 kb on + strand, within GFF545at 542.183 kb on + strand, within GFF545at 542.188 kb on - strand, within GFF545at 542.193 kb on + strand, within GFF545at 542.200 kb on + strand, within GFF545at 542.226 kb on + strand, within GFF545at 542.226 kb on + strand, within GFF545at 542.227 kb on + strand, within GFF545at 542.232 kb on + strand, within GFF545at 542.240 kb on - strand, within GFF545at 542.255 kb on + strand, within GFF545at 542.261 kb on + strand, within GFF545at 542.269 kb on - strandat 542.269 kb on - strandat 542.269 kb on - strandat 542.269 kb on - strandat 542.273 kb on + strandat 542.273 kb on + strandat 542.281 kb on - strandat 542.281 kb on - strandat 542.283 kb on + strandat 542.286 kb on - strandat 542.302 kb on - strandat 542.315 kb on - strandat 542.331 kb on + strandat 542.331 kb on + strandat 542.331 kb on + strandat 542.362 kb on + strandat 542.370 kb on - strandat 542.374 kb on - strandat 542.382 kb on - strandat 542.510 kb on + strand, within GFF546at 542.510 kb on + strand, within GFF546at 542.518 kb on - strand, within GFF546at 542.526 kb on + strand, within GFF546at 542.526 kb on + strand, within GFF546at 542.582 kb on - strand, within GFF546at 542.621 kb on + strand, within GFF546at 542.631 kb on - strand, within GFF546at 542.682 kb on + strand, within GFF546at 542.682 kb on - strand, within GFF546at 542.711 kb on + strand, within GFF546at 542.714 kb on + strand, within GFF546at 542.714 kb on - strand, within GFF546at 542.715 kb on + strand, within GFF546at 542.723 kb on - strand, within GFF546at 542.731 kb on + strand, within GFF546at 542.732 kb on + strand, within GFF546at 542.732 kb on + strand, within GFF546at 542.740 kb on - strand, within GFF546at 542.745 kb on - strand, within GFF546at 542.745 kb on - strand, within GFF546at 542.750 kb on + strand, within GFF546at 542.792 kb on - strand, within GFF546at 542.892 kb on + strand, within GFF546at 542.928 kb on + strand, within GFF546at 542.944 kb on + strand, within GFF546at 542.952 kb on - strand, within GFF546at 542.952 kb on - strand, within GFF546at 542.960 kb on + strand, within GFF546at 542.960 kb on + strand, within GFF546at 542.962 kb on + strand, within GFF546at 542.981 kb on - strand, within GFF546at 542.994 kb on + strand, within GFF546at 543.000 kb on + strand, within GFF546at 543.000 kb on + strand, within GFF546at 543.000 kb on + strand, within GFF546at 543.000 kb on + strand, within GFF546at 543.005 kb on + strand, within GFF546at 543.008 kb on - strand, within GFF546at 543.008 kb on - strand, within GFF546at 543.008 kb on - strand, within GFF546at 543.008 kb on - strand, within GFF546at 543.030 kb on - strand, within GFF546at 543.030 kb on - strand, within GFF546at 543.037 kb on - strand, within GFF546at 543.041 kb on + strand, within GFF546at 543.041 kb on + strand, within GFF546at 543.041 kb on + strand, within GFF546at 543.041 kb on + strand, within GFF546at 543.046 kb on + strand, within GFF546at 543.046 kb on - strand, within GFF546at 543.049 kb on - strand, within GFF546at 543.054 kb on - strand, within GFF546at 543.082 kb on + strand, within GFF546at 543.090 kb on - strand, within GFF546at 543.090 kb on - strand, within GFF546at 543.122 kb on - strand, within GFF546at 543.124 kb on + strand, within GFF546at 543.140 kb on - strand, within GFF546at 543.140 kb on - strand, within GFF546at 543.140 kb on - strand, within GFF546at 543.172 kb on - strand, within GFF546at 543.172 kb on - strand, within GFF546at 543.172 kb on - strand, within GFF546at 543.194 kb on + strand, within GFF546at 543.197 kb on - strand, within GFF546at 543.202 kb on - strand, within GFF546at 543.222 kb on + strandat 543.230 kb on - strandat 543.239 kb on + strandat 543.247 kb on - strandat 543.252 kb on + strandat 543.252 kb on + strandat 543.257 kb on + strandat 543.257 kb on + strandat 543.257 kb on + strandat 543.260 kb on - strandat 543.265 kb on - strandat 543.265 kb on - strandat 543.295 kb on - strandat 543.303 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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540,357 - GFF544 0.30 +1.5
540,375 + GFF544 0.32 +0.3
540,382 - GFF544 0.32 -1.8
540,416 + GFF544 0.35 -0.4
540,444 + GFF544 0.37 +0.2
540,498 - GFF544 0.41 -1.5
540,503 - GFF544 0.41 -0.4
540,515 - GFF544 0.42 -1.3
540,529 + GFF544 0.43 -2.0
540,532 - GFF544 0.43 +0.1
540,579 + GFF544 0.47 -0.5
540,580 + GFF544 0.47 -0.1
540,588 - GFF544 0.48 +1.2
540,589 - GFF544 0.48 -1.1
540,647 + GFF544 0.52 -0.7
540,672 + GFF544 0.54 +0.2
540,685 - GFF544 0.55 -0.4
540,706 + GFF544 0.56 +0.4
540,726 + GFF544 0.58 +1.3
540,734 - GFF544 0.59 +0.2
540,767 + GFF544 0.61 +0.0
540,772 + GFF544 0.61 +1.1
540,784 - GFF544 0.62 +1.6
540,796 - GFF544 0.63 -0.9
540,815 - GFF544 0.65 +0.6
540,815 - GFF544 0.65 -1.8
540,815 - GFF544 0.65 +0.4
540,822 - GFF544 0.65 -0.0
540,822 - GFF544 0.65 -0.0
540,832 - GFF544 0.66 +0.0
540,832 - GFF544 0.66 -0.8
540,858 - GFF544 0.68 +3.3
540,860 + GFF544 0.68 +1.3
540,888 + GFF544 0.70 +0.5
540,907 + GFF544 0.71 -0.4
540,916 - GFF544 0.72 +0.2
540,942 + GFF544 0.74 +0.6
540,944 + GFF544 0.74 +0.9
540,955 + GFF544 0.75 -1.0
540,965 + GFF544 0.76 -0.8
540,996 + GFF544 0.78 -2.7
540,999 - GFF544 0.78 -1.1
541,009 + GFF544 0.79 -1.0
541,009 + GFF544 0.79 -1.0
541,044 - GFF544 0.82 -0.7
541,050 - GFF544 0.82 +0.4
541,056 + GFF544 0.83 +1.3
541,056 + GFF544 0.83 +0.5
541,064 - GFF544 0.83 -1.4
541,087 - GFF544 0.85 -0.2
541,110 - GFF544 0.87 -0.2
541,136 + GFF544 0.89 +0.8
541,136 + GFF544 0.89 -0.4
541,149 + GFF544 0.89 +0.5
541,202 + -2.2
541,253 + -0.6
541,263 - -0.1
541,280 - -0.4
541,292 - +1.1
541,302 - -0.1
541,302 - -0.7
541,325 + +1.2
541,327 + -0.3
541,327 + +1.3
541,327 + +0.2
541,346 + -0.1
541,412 + -0.1
541,421 + +1.0
541,446 - GFF545 0.11 -0.0
541,500 + GFF545 0.17 -1.4
541,510 + GFF545 0.18 +1.4
541,518 - GFF545 0.18 -1.1
541,544 + GFF545 0.21 +1.3
541,544 + GFF545 0.21 -0.3
541,544 + GFF545 0.21 +0.7
541,552 - GFF545 0.22 -0.4
541,552 - GFF545 0.22 +1.0
541,552 - GFF545 0.22 +0.8
541,580 + GFF545 0.24 +0.7
541,607 + GFF545 0.27 +0.6
541,607 + GFF545 0.27 -0.2
541,614 - GFF545 0.28 -3.1
541,640 - GFF545 0.30 -0.6
541,640 - GFF545 0.30 -1.1
541,653 + GFF545 0.31 +0.3
541,653 + GFF545 0.31 -0.7
541,663 + GFF545 0.32 +0.6
541,663 + GFF545 0.32 +1.1
541,663 + GFF545 0.32 +0.1
541,671 - GFF545 0.33 -1.2
541,684 + GFF545 0.34 +0.2
541,709 + GFF545 0.37 +0.6
541,717 - GFF545 0.37 +1.7
541,751 + GFF545 0.41 -0.4
541,751 + GFF545 0.41 +1.3
541,751 + GFF545 0.41 -0.2
541,751 + GFF545 0.41 +0.4
541,751 + GFF545 0.41 -0.3
541,751 + GFF545 0.41 +0.5
541,751 + GFF545 0.41 -0.2
541,757 - GFF545 0.41 -0.1
541,759 - GFF545 0.42 +1.1
541,759 - GFF545 0.42 -0.3
541,759 - GFF545 0.42 +0.4
541,785 + GFF545 0.44 -0.1
541,793 - GFF545 0.45 -0.8
541,799 + GFF545 0.45 -0.6
541,799 + GFF545 0.45 -0.9
541,799 + GFF545 0.45 -1.0
541,799 + GFF545 0.45 +0.1
541,799 + GFF545 0.45 +0.2
541,799 + GFF545 0.45 -2.9
541,799 + GFF545 0.45 +0.4
541,799 + GFF545 0.45 +1.2
541,807 - GFF545 0.46 +1.6
541,807 - GFF545 0.46 -0.4
541,807 - GFF545 0.46 +1.4
541,807 - GFF545 0.46 -0.2
541,807 - GFF545 0.46 +0.7
541,807 - GFF545 0.46 -0.2
541,807 - GFF545 0.46 +0.1
541,807 - GFF545 0.46 -0.0
541,807 - GFF545 0.46 +0.7
541,807 - GFF545 0.46 -0.4
541,807 - GFF545 0.46 -1.9
541,807 - GFF545 0.46 -1.3
541,827 - GFF545 0.48 +0.6
541,843 + GFF545 0.50 +0.3
541,843 + GFF545 0.50 -0.7
541,851 - GFF545 0.50 -0.2
541,893 + GFF545 0.54 -1.0
541,893 + GFF545 0.54 +0.1
541,901 - GFF545 0.55 +0.1
541,901 - GFF545 0.55 +0.5
541,906 - GFF545 0.56 +0.2
541,946 - GFF545 0.60 -0.2
541,959 + GFF545 0.61 -1.8
541,959 + GFF545 0.61 -0.4
541,959 + GFF545 0.61 -0.9
541,959 + GFF545 0.61 -0.4
541,959 + GFF545 0.61 -0.4
541,966 - GFF545 0.61 +0.1
541,967 - GFF545 0.62 +0.0
541,967 - GFF545 0.62 +0.2
541,967 - GFF545 0.62 -2.3
541,969 + GFF545 0.62 +0.2
541,980 + GFF545 0.63 -0.3
542,040 - GFF545 0.69 -0.1
542,050 + GFF545 0.70 +1.2
542,050 + GFF545 0.70 -0.9
542,050 + GFF545 0.70 +1.0
542,050 + GFF545 0.70 +1.4
542,050 + GFF545 0.70 +0.1
542,058 - GFF545 0.70 -0.0
542,058 - GFF545 0.70 +0.4
542,111 - GFF545 0.75 -0.0
542,111 - GFF545 0.75 +0.7
542,113 - GFF545 0.76 +0.1
542,140 + GFF545 0.78 -0.5
542,154 + GFF545 0.80 -0.9
542,183 + GFF545 0.82 +1.0
542,188 - GFF545 0.83 -1.5
542,193 + GFF545 0.83 -0.8
542,200 + GFF545 0.84 -0.4
542,226 + GFF545 0.87 -0.7
542,226 + GFF545 0.87 +0.2
542,227 + GFF545 0.87 -0.4
542,232 + GFF545 0.87 -0.0
542,240 - GFF545 0.88 +0.5
542,255 + GFF545 0.89 +0.7
542,261 + GFF545 0.90 -0.6
542,269 - -0.1
542,269 - -0.2
542,269 - -0.1
542,269 - -0.6
542,273 + -0.3
542,273 + -1.5
542,281 - +0.9
542,281 - -1.0
542,283 + +0.5
542,286 - +0.8
542,302 - -0.3
542,315 - +0.3
542,331 + -0.0
542,331 + +1.0
542,331 + -0.5
542,362 + +0.0
542,370 - +0.1
542,374 - +0.8
542,382 - -0.1
542,510 + GFF546 0.15 -1.8
542,510 + GFF546 0.15 +2.2
542,518 - GFF546 0.16 +0.9
542,526 + GFF546 0.17 +0.8
542,526 + GFF546 0.17 -0.4
542,582 - GFF546 0.23 +0.3
542,621 + GFF546 0.27 -1.7
542,631 - GFF546 0.28 -0.1
542,682 + GFF546 0.34 -0.8
542,682 - GFF546 0.34 +1.0
542,711 + GFF546 0.37 +0.8
542,714 + GFF546 0.37 -0.6
542,714 - GFF546 0.37 -0.3
542,715 + GFF546 0.37 +0.2
542,723 - GFF546 0.38 +0.4
542,731 + GFF546 0.39 -2.0
542,732 + GFF546 0.39 +0.0
542,732 + GFF546 0.39 +0.8
542,740 - GFF546 0.40 +0.1
542,745 - GFF546 0.40 +0.1
542,745 - GFF546 0.40 +2.2
542,750 + GFF546 0.41 +0.8
542,792 - GFF546 0.45 -0.7
542,892 + GFF546 0.56 -2.5
542,928 + GFF546 0.60 -0.8
542,944 + GFF546 0.61 -2.2
542,952 - GFF546 0.62 +0.5
542,952 - GFF546 0.62 -0.6
542,960 + GFF546 0.63 -1.5
542,960 + GFF546 0.63 -1.3
542,962 + GFF546 0.63 -1.0
542,981 - GFF546 0.65 -1.3
542,994 + GFF546 0.67 +0.1
543,000 + GFF546 0.67 +0.9
543,000 + GFF546 0.67 -0.1
543,000 + GFF546 0.67 -0.2
543,000 + GFF546 0.67 +1.1
543,005 + GFF546 0.68 +0.5
543,008 - GFF546 0.68 +0.2
543,008 - GFF546 0.68 -0.8
543,008 - GFF546 0.68 -1.0
543,008 - GFF546 0.68 -0.1
543,030 - GFF546 0.70 +0.8
543,030 - GFF546 0.70 +0.8
543,037 - GFF546 0.71 +0.2
543,041 + GFF546 0.72 -0.3
543,041 + GFF546 0.72 -1.3
543,041 + GFF546 0.72 +0.7
543,041 + GFF546 0.72 -0.1
543,046 + GFF546 0.72 -1.6
543,046 - GFF546 0.72 -1.3
543,049 - GFF546 0.72 +0.8
543,054 - GFF546 0.73 +0.9
543,082 + GFF546 0.76 -0.5
543,090 - GFF546 0.77 +0.5
543,090 - GFF546 0.77 +0.4
543,122 - GFF546 0.80 +0.0
543,124 + GFF546 0.80 +0.7
543,140 - GFF546 0.82 +0.2
543,140 - GFF546 0.82 +0.2
543,140 - GFF546 0.82 +0.4
543,172 - GFF546 0.85 -0.9
543,172 - GFF546 0.85 +1.2
543,172 - GFF546 0.85 +0.8
543,194 + GFF546 0.88 -0.4
543,197 - GFF546 0.88 -0.7
543,202 - GFF546 0.89 +1.2
543,222 + +1.2
543,230 - -0.6
543,239 + +0.5
543,247 - +0.6
543,252 + +0.9
543,252 + +2.0
543,257 + -1.0
543,257 + +0.3
543,257 + -0.7
543,260 - +1.8
543,265 - -1.2
543,265 - -1.5
543,295 - -0.2
543,303 + +0.2

Or see this region's nucleotide sequence