Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5363 and GFF5364 overlap by 4 nucleotides GFF5364 and GFF5365 are separated by 16 nucleotides GFF5365 and GFF5366 overlap by 1 nucleotides GFF5366 and GFF5367 are separated by 87 nucleotides GFF5367 and GFF5368 are separated by 127 nucleotides GFF5368 and GFF5369 are separated by 36 nucleotides
GFF5363 - GENE II AND X PROTEINS, at 5,349,596 to 5,350,006
GFF5363
GFF5364 - hypothetical protein, at 5,350,003 to 5,350,209
GFF5364
GFF5365 - Putative transmembrane protein, at 5,350,226 to 5,350,672
GFF5365
GFF5366 - MBL-fold metallo-hydrolase superfamily, at 5,350,672 to 5,351,589
GFF5366
GFF5367 - Alkyl hydroperoxide reductase subunit C-like protein, at 5,351,677 to 5,352,018
GFF5367
GFF5368 - Mobile element protein, at 5,352,146 to 5,352,409
GFF5368
GFF5369 - hypothetical protein, at 5,352,446 to 5,352,682
GFF5369
Position (kb) 5350
5351
5352 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5349.688 kb on + strand, within GFF5363 at 5349.688 kb on - strand, within GFF5363 at 5349.725 kb on - strand, within GFF5363 at 5349.742 kb on - strand, within GFF5363 at 5349.764 kb on + strand, within GFF5363 at 5349.769 kb on + strand, within GFF5363 at 5349.769 kb on + strand, within GFF5363 at 5349.777 kb on - strand, within GFF5363 at 5349.777 kb on - strand, within GFF5363 at 5349.777 kb on - strand, within GFF5363 at 5349.793 kb on - strand, within GFF5363 at 5349.821 kb on + strand, within GFF5363 at 5349.829 kb on - strand, within GFF5363 at 5349.829 kb on - strand, within GFF5363 at 5349.831 kb on + strand, within GFF5363 at 5349.853 kb on + strand, within GFF5363 at 5349.861 kb on - strand, within GFF5363 at 5349.902 kb on - strand, within GFF5363 at 5349.902 kb on - strand, within GFF5363 at 5349.902 kb on - strand, within GFF5363 at 5349.912 kb on - strand, within GFF5363 at 5349.912 kb on - strand, within GFF5363 at 5349.923 kb on - strand, within GFF5363 at 5349.930 kb on + strand, within GFF5363 at 5349.931 kb on + strand, within GFF5363 at 5349.938 kb on - strand, within GFF5363 at 5349.938 kb on - strand, within GFF5363 at 5349.955 kb on + strand, within GFF5363 at 5349.955 kb on + strand, within GFF5363 at 5349.955 kb on + strand, within GFF5363 at 5349.963 kb on - strand, within GFF5363 at 5349.963 kb on - strand, within GFF5363 at 5349.963 kb on - strand, within GFF5363 at 5349.968 kb on - strand at 5349.998 kb on + strand at 5349.998 kb on + strand at 5350.058 kb on - strand, within GFF5364 at 5350.058 kb on - strand, within GFF5364 at 5350.058 kb on - strand, within GFF5364 at 5350.058 kb on - strand, within GFF5364 at 5350.078 kb on + strand, within GFF5364 at 5350.078 kb on + strand, within GFF5364 at 5350.078 kb on + strand, within GFF5364 at 5350.086 kb on - strand, within GFF5364 at 5350.086 kb on - strand, within GFF5364 at 5350.086 kb on - strand, within GFF5364 at 5350.086 kb on - strand, within GFF5364 at 5350.086 kb on - strand, within GFF5364 at 5350.106 kb on + strand, within GFF5364 at 5350.128 kb on + strand, within GFF5364 at 5350.142 kb on + strand, within GFF5364 at 5350.153 kb on + strand, within GFF5364 at 5350.153 kb on + strand, within GFF5364 at 5350.168 kb on + strand, within GFF5364 at 5350.201 kb on - strand at 5350.248 kb on + strand at 5350.253 kb on + strand at 5350.266 kb on - strand at 5350.282 kb on + strand, within GFF5365 at 5350.289 kb on + strand, within GFF5365 at 5350.289 kb on + strand, within GFF5365 at 5350.290 kb on - strand, within GFF5365 at 5350.290 kb on - strand, within GFF5365 at 5350.320 kb on + strand, within GFF5365 at 5350.370 kb on - strand, within GFF5365 at 5350.383 kb on + strand, within GFF5365 at 5350.422 kb on - strand, within GFF5365 at 5350.462 kb on - strand, within GFF5365 at 5350.491 kb on - strand, within GFF5365 at 5350.496 kb on + strand, within GFF5365 at 5350.504 kb on - strand, within GFF5365 at 5350.524 kb on - strand, within GFF5365 at 5350.547 kb on + strand, within GFF5365 at 5350.555 kb on - strand, within GFF5365 at 5350.555 kb on - strand, within GFF5365 at 5350.555 kb on - strand, within GFF5365 at 5350.555 kb on - strand, within GFF5365 at 5350.555 kb on - strand, within GFF5365 at 5350.560 kb on - strand, within GFF5365 at 5350.564 kb on + strand, within GFF5365 at 5350.567 kb on - strand, within GFF5365 at 5350.581 kb on + strand, within GFF5365 at 5350.581 kb on + strand, within GFF5365 at 5350.581 kb on + strand, within GFF5365 at 5350.584 kb on - strand, within GFF5365 at 5350.589 kb on - strand, within GFF5365 at 5350.589 kb on - strand, within GFF5365 at 5350.589 kb on - strand, within GFF5365 at 5350.589 kb on - strand, within GFF5365 at 5350.589 kb on - strand, within GFF5365 at 5350.589 kb on - strand, within GFF5365 at 5350.589 kb on - strand, within GFF5365 at 5350.591 kb on + strand, within GFF5365 at 5350.636 kb on - strand at 5350.650 kb on + strand at 5350.653 kb on - strand at 5350.654 kb on - strand at 5350.669 kb on + strand at 5350.669 kb on + strand at 5350.669 kb on + strand at 5350.669 kb on + strand at 5350.669 kb on + strand at 5350.677 kb on - strand at 5350.677 kb on - strand at 5350.677 kb on - strand at 5350.677 kb on - strand at 5350.677 kb on - strand at 5350.677 kb on - strand at 5350.677 kb on - strand at 5350.677 kb on - strand at 5350.677 kb on - strand at 5350.677 kb on - strand at 5350.677 kb on - strand at 5350.677 kb on - strand at 5350.677 kb on - strand at 5350.677 kb on - strand at 5350.682 kb on - strand at 5350.691 kb on + strand at 5350.691 kb on + strand at 5350.692 kb on - strand at 5350.699 kb on - strand at 5350.709 kb on + strand at 5350.717 kb on - strand at 5350.722 kb on - strand at 5350.724 kb on + strand at 5350.739 kb on + strand at 5350.747 kb on - strand at 5350.750 kb on + strand at 5350.758 kb on - strand at 5350.767 kb on + strand, within GFF5366 at 5350.783 kb on + strand, within GFF5366 at 5350.865 kb on + strand, within GFF5366 at 5350.875 kb on + strand, within GFF5366 at 5350.875 kb on + strand, within GFF5366 at 5350.899 kb on + strand, within GFF5366 at 5350.976 kb on + strand, within GFF5366 at 5350.986 kb on + strand, within GFF5366 at 5350.986 kb on - strand, within GFF5366 at 5350.988 kb on - strand, within GFF5366 at 5350.993 kb on + strand, within GFF5366 at 5350.994 kb on - strand, within GFF5366 at 5351.019 kb on + strand, within GFF5366 at 5351.019 kb on + strand, within GFF5366 at 5351.044 kb on - strand, within GFF5366 at 5351.241 kb on - strand, within GFF5366 at 5351.303 kb on + strand, within GFF5366 at 5351.303 kb on + strand, within GFF5366 at 5351.303 kb on + strand, within GFF5366 at 5351.311 kb on - strand, within GFF5366 at 5351.311 kb on - strand, within GFF5366 at 5351.311 kb on - strand, within GFF5366 at 5351.311 kb on - strand, within GFF5366 at 5351.326 kb on - strand, within GFF5366 at 5351.362 kb on - strand, within GFF5366 at 5351.409 kb on + strand, within GFF5366 at 5351.423 kb on + strand, within GFF5366 at 5351.428 kb on + strand, within GFF5366 at 5351.428 kb on + strand, within GFF5366 at 5351.451 kb on + strand, within GFF5366 at 5351.456 kb on - strand, within GFF5366 at 5351.470 kb on + strand, within GFF5366 at 5351.478 kb on + strand, within GFF5366 at 5351.480 kb on + strand, within GFF5366 at 5351.480 kb on + strand, within GFF5366 at 5351.486 kb on - strand, within GFF5366 at 5351.488 kb on - strand, within GFF5366 at 5351.488 kb on - strand, within GFF5366 at 5351.488 kb on - strand, within GFF5366 at 5351.488 kb on - strand, within GFF5366 at 5351.505 kb on - strand at 5351.509 kb on + strand at 5351.516 kb on + strand at 5351.516 kb on + strand at 5351.521 kb on + strand at 5351.521 kb on + strand at 5351.523 kb on + strand at 5351.529 kb on - strand at 5351.529 kb on - strand at 5351.529 kb on - strand at 5351.554 kb on - strand at 5351.645 kb on + strand at 5351.722 kb on - strand, within GFF5367 at 5351.722 kb on - strand, within GFF5367 at 5351.754 kb on - strand, within GFF5367 at 5351.829 kb on + strand, within GFF5367 at 5351.892 kb on - strand, within GFF5367 at 5351.926 kb on - strand, within GFF5367 at 5351.926 kb on - strand, within GFF5367 at 5351.929 kb on + strand, within GFF5367 at 5351.940 kb on + strand, within GFF5367 at 5351.940 kb on + strand, within GFF5367 at 5351.940 kb on + strand, within GFF5367 at 5351.940 kb on + strand, within GFF5367 at 5351.940 kb on + strand, within GFF5367 at 5351.940 kb on + strand, within GFF5367 at 5351.948 kb on - strand, within GFF5367 at 5351.948 kb on - strand, within GFF5367 at 5351.948 kb on - strand, within GFF5367 at 5351.948 kb on - strand, within GFF5367 at 5351.948 kb on - strand, within GFF5367 at 5352.025 kb on - strand at 5352.504 kb on + strand, within GFF5369 at 5352.533 kb on + strand, within GFF5369 at 5352.577 kb on + strand, within GFF5369
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 5,349,688 + GFF5363 0.22 +0.4 5,349,688 - GFF5363 0.22 +0.5 5,349,725 - GFF5363 0.31 +0.7 5,349,742 - GFF5363 0.36 -0.1 5,349,764 + GFF5363 0.41 -0.2 5,349,769 + GFF5363 0.42 -1.2 5,349,769 + GFF5363 0.42 -1.0 5,349,777 - GFF5363 0.44 +0.5 5,349,777 - GFF5363 0.44 -0.2 5,349,777 - GFF5363 0.44 +0.2 5,349,793 - GFF5363 0.48 -0.3 5,349,821 + GFF5363 0.55 -1.8 5,349,829 - GFF5363 0.57 -0.4 5,349,829 - GFF5363 0.57 +0.8 5,349,831 + GFF5363 0.57 -0.6 5,349,853 + GFF5363 0.63 -0.3 5,349,861 - GFF5363 0.64 -1.2 5,349,902 - GFF5363 0.74 -1.0 5,349,902 - GFF5363 0.74 +0.6 5,349,902 - GFF5363 0.74 +1.2 5,349,912 - GFF5363 0.77 -1.5 5,349,912 - GFF5363 0.77 +0.0 5,349,923 - GFF5363 0.80 -0.9 5,349,930 + GFF5363 0.81 +0.4 5,349,931 + GFF5363 0.82 -1.5 5,349,938 - GFF5363 0.83 -0.4 5,349,938 - GFF5363 0.83 -0.8 5,349,955 + GFF5363 0.87 +1.3 5,349,955 + GFF5363 0.87 +0.4 5,349,955 + GFF5363 0.87 +0.0 5,349,963 - GFF5363 0.89 -0.8 5,349,963 - GFF5363 0.89 -0.3 5,349,963 - GFF5363 0.89 -1.1 5,349,968 - +0.3 5,349,998 + +0.2 5,349,998 + +0.2 5,350,058 - GFF5364 0.27 -1.9 5,350,058 - GFF5364 0.27 -0.2 5,350,058 - GFF5364 0.27 -0.5 5,350,058 - GFF5364 0.27 -0.0 5,350,078 + GFF5364 0.36 -0.7 5,350,078 + GFF5364 0.36 -0.3 5,350,078 + GFF5364 0.36 -1.2 5,350,086 - GFF5364 0.40 -0.2 5,350,086 - GFF5364 0.40 +0.3 5,350,086 - GFF5364 0.40 -1.2 5,350,086 - GFF5364 0.40 -0.1 5,350,086 - GFF5364 0.40 +1.2 5,350,106 + GFF5364 0.50 -0.3 5,350,128 + GFF5364 0.60 -1.5 5,350,142 + GFF5364 0.67 -0.4 5,350,153 + GFF5364 0.72 -0.4 5,350,153 + GFF5364 0.72 -0.9 5,350,168 + GFF5364 0.80 -0.1 5,350,201 - -0.3 5,350,248 + -1.4 5,350,253 + -0.8 5,350,266 - +0.3 5,350,282 + GFF5365 0.13 +0.4 5,350,289 + GFF5365 0.14 -0.9 5,350,289 + GFF5365 0.14 +0.1 5,350,290 - GFF5365 0.14 -0.3 5,350,290 - GFF5365 0.14 +0.5 5,350,320 + GFF5365 0.21 -1.0 5,350,370 - GFF5365 0.32 +0.2 5,350,383 + GFF5365 0.35 +1.1 5,350,422 - GFF5365 0.44 -0.0 5,350,462 - GFF5365 0.53 +0.4 5,350,491 - GFF5365 0.59 +0.2 5,350,496 + GFF5365 0.60 -2.1 5,350,504 - GFF5365 0.62 +0.5 5,350,524 - GFF5365 0.67 +0.1 5,350,547 + GFF5365 0.72 +0.0 5,350,555 - GFF5365 0.74 -1.1 5,350,555 - GFF5365 0.74 -0.8 5,350,555 - GFF5365 0.74 -0.9 5,350,555 - GFF5365 0.74 -0.8 5,350,555 - GFF5365 0.74 +1.0 5,350,560 - GFF5365 0.75 -0.9 5,350,564 + GFF5365 0.76 -0.6 5,350,567 - GFF5365 0.76 -2.1 5,350,581 + GFF5365 0.79 +0.2 5,350,581 + GFF5365 0.79 -0.9 5,350,581 + GFF5365 0.79 -0.3 5,350,584 - GFF5365 0.80 +0.1 5,350,589 - GFF5365 0.81 -0.8 5,350,589 - GFF5365 0.81 -0.5 5,350,589 - GFF5365 0.81 +0.0 5,350,589 - GFF5365 0.81 +0.3 5,350,589 - GFF5365 0.81 -0.2 5,350,589 - GFF5365 0.81 +0.3 5,350,589 - GFF5365 0.81 +1.9 5,350,591 + GFF5365 0.82 -0.9 5,350,636 - -0.8 5,350,650 + +0.8 5,350,653 - -0.1 5,350,654 - +0.0 5,350,669 + -0.0 5,350,669 + -0.4 5,350,669 + -0.2 5,350,669 + -1.1 5,350,669 + -0.6 5,350,677 - -1.6 5,350,677 - +0.2 5,350,677 - -0.4 5,350,677 - +0.0 5,350,677 - -1.3 5,350,677 - +0.0 5,350,677 - -2.0 5,350,677 - -0.5 5,350,677 - -0.0 5,350,677 - -0.5 5,350,677 - -0.0 5,350,677 - -1.5 5,350,677 - -1.3 5,350,677 - -0.2 5,350,682 - -0.2 5,350,691 + -0.7 5,350,691 + -1.3 5,350,692 - -0.5 5,350,699 - -0.4 5,350,709 + -1.4 5,350,717 - -0.4 5,350,722 - +0.2 5,350,724 + +1.3 5,350,739 + +0.3 5,350,747 - -0.2 5,350,750 + -0.1 5,350,758 - +0.3 5,350,767 + GFF5366 0.10 -1.7 5,350,783 + GFF5366 0.12 -0.9 5,350,865 + GFF5366 0.21 -0.2 5,350,875 + GFF5366 0.22 +0.1 5,350,875 + GFF5366 0.22 +0.6 5,350,899 + GFF5366 0.25 -2.3 5,350,976 + GFF5366 0.33 +0.1 5,350,986 + GFF5366 0.34 -1.1 5,350,986 - GFF5366 0.34 -0.4 5,350,988 - GFF5366 0.34 -0.6 5,350,993 + GFF5366 0.35 -0.9 5,350,994 - GFF5366 0.35 -0.6 5,351,019 + GFF5366 0.38 +0.2 5,351,019 + GFF5366 0.38 +0.2 5,351,044 - GFF5366 0.41 +0.8 5,351,241 - GFF5366 0.62 +1.2 5,351,303 + GFF5366 0.69 +1.2 5,351,303 + GFF5366 0.69 -0.3 5,351,303 + GFF5366 0.69 +0.1 5,351,311 - GFF5366 0.70 -3.0 5,351,311 - GFF5366 0.70 +0.4 5,351,311 - GFF5366 0.70 -1.8 5,351,311 - GFF5366 0.70 -1.2 5,351,326 - GFF5366 0.71 +0.3 5,351,362 - GFF5366 0.75 -1.2 5,351,409 + GFF5366 0.80 +0.2 5,351,423 + GFF5366 0.82 +0.5 5,351,428 + GFF5366 0.82 -0.5 5,351,428 + GFF5366 0.82 -0.3 5,351,451 + GFF5366 0.85 -1.0 5,351,456 - GFF5366 0.85 +0.5 5,351,470 + GFF5366 0.87 -0.5 5,351,478 + GFF5366 0.88 -0.6 5,351,480 + GFF5366 0.88 -2.2 5,351,480 + GFF5366 0.88 -0.4 5,351,486 - GFF5366 0.89 -1.2 5,351,488 - GFF5366 0.89 +0.4 5,351,488 - GFF5366 0.89 -1.1 5,351,488 - GFF5366 0.89 -2.1 5,351,488 - GFF5366 0.89 -0.2 5,351,505 - -2.2 5,351,509 + -1.6 5,351,516 + +0.1 5,351,516 + -0.4 5,351,521 + -0.6 5,351,521 + +0.0 5,351,523 + +0.2 5,351,529 - -0.2 5,351,529 - +0.5 5,351,529 - -1.0 5,351,554 - -0.5 5,351,645 + +0.2 5,351,722 - GFF5367 0.13 -0.3 5,351,722 - GFF5367 0.13 -0.4 5,351,754 - GFF5367 0.23 -0.2 5,351,829 + GFF5367 0.44 -0.2 5,351,892 - GFF5367 0.63 -0.8 5,351,926 - GFF5367 0.73 -0.8 5,351,926 - GFF5367 0.73 -1.2 5,351,929 + GFF5367 0.74 +0.4 5,351,940 + GFF5367 0.77 -0.7 5,351,940 + GFF5367 0.77 -0.0 5,351,940 + GFF5367 0.77 -0.3 5,351,940 + GFF5367 0.77 +0.5 5,351,940 + GFF5367 0.77 +1.1 5,351,940 + GFF5367 0.77 -0.2 5,351,948 - GFF5367 0.79 -1.2 5,351,948 - GFF5367 0.79 -0.4 5,351,948 - GFF5367 0.79 +0.3 5,351,948 - GFF5367 0.79 -0.2 5,351,948 - GFF5367 0.79 -0.4 5,352,025 - -0.5 5,352,504 + GFF5369 0.24 +1.0 5,352,533 + GFF5369 0.37 +0.0 5,352,577 + GFF5369 0.55 +0.3
Or see this region's nucleotide sequence