Strain Fitness in Sphingobium sp. HT1-2 around GFF5336

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,327,616	-		GFF5335	0.76	-0.7
5,327,627	+		GFF5335	0.76	+0.2
5,327,629	+		GFF5335	0.76	-0.7
5,327,637	-		GFF5335	0.77	+0.4
5,327,640	+		GFF5335	0.77	-0.7
5,327,640	+		GFF5335	0.77	-0.6
5,327,650	+		GFF5335	0.77	+0.7
5,327,650	+		GFF5335	0.77	-0.5
5,327,658	-		GFF5335	0.78	-0.7
5,327,658	-		GFF5335	0.78	+0.4
5,327,658	-		GFF5335	0.78	-1.4
5,327,660	-		GFF5335	0.78	-0.1
5,327,665	-		GFF5335	0.78	+0.6
5,327,689	+		GFF5335	0.79	-2.7
5,327,700	-		GFF5335	0.79	-0.7
5,327,713	+		GFF5335	0.80	-2.1
5,327,713	-		GFF5335	0.80	-0.2
5,327,744	-		GFF5335	0.81	-1.1
5,327,749	-		GFF5335	0.81	-2.1
5,327,754	+		GFF5335	0.82	-2.8
5,327,758	+		GFF5335	0.82	-0.3
5,327,773	-		GFF5335	0.82	-0.4
5,327,812	+		GFF5335	0.84	-0.9
5,327,812	+		GFF5335	0.84	-0.8
5,327,812	+		GFF5335	0.84	-0.8
5,327,812	+		GFF5335	0.84	-0.4
5,327,812	+		GFF5335	0.84	-0.0
5,327,812	+		GFF5335	0.84	+0.0
5,327,812	+		GFF5335	0.84	-1.6
5,327,812	+		GFF5335	0.84	+0.5
5,327,812	+		GFF5335	0.84	+1.0
5,327,812	+		GFF5335	0.84	+0.2
5,327,812	+		GFF5335	0.84	-0.5
5,327,820	+		GFF5335	0.84	+0.4
5,327,820	+		GFF5335	0.84	-1.5
5,327,820	-		GFF5335	0.84	-0.4
5,327,820	-		GFF5335	0.84	-0.3
5,327,820	-		GFF5335	0.84	-1.8
5,327,820	-		GFF5335	0.84	-1.8
5,327,820	-		GFF5335	0.84	-0.4
5,327,820	-		GFF5335	0.84	-1.2
5,327,820	-		GFF5335	0.84	-0.5
5,327,820	-		GFF5335	0.84	-0.8
5,327,820	-		GFF5335	0.84	-1.5
5,327,820	-		GFF5335	0.84	+0.4
5,327,820	-		GFF5335	0.84	-0.4
5,327,821	-		GFF5335	0.84	-0.7
5,327,828	-		GFF5335	0.85	+0.7
5,327,828	-		GFF5335	0.85	-1.8
5,327,837	+		GFF5335	0.85	-0.3
5,327,847	+		GFF5335	0.85	-2.2
5,327,847	+		GFF5335	0.85	-0.8
5,327,847	+		GFF5335	0.85	+0.1
5,327,852	+		GFF5335	0.86	-2.6
5,327,855	-		GFF5335	0.86	-3.6
5,327,857	+		GFF5335	0.86	-0.6
5,327,857	+		GFF5335	0.86	-1.0
5,327,860	-		GFF5335	0.86	-0.5
5,327,860	-		GFF5335	0.86	-0.5
5,327,862	+		GFF5335	0.86	+0.7
5,327,870	-		GFF5335	0.86	+0.4
5,327,875	+		GFF5335	0.87	+0.3
5,327,892	+		GFF5335	0.87	-0.4
5,327,892	+		GFF5335	0.87	-0.5
5,327,892	+		GFF5335	0.87	-2.1
5,327,892	+		GFF5335	0.87	+0.1
5,327,900	-		GFF5335	0.88	-0.4
5,327,900	-		GFF5335	0.88	-1.8
5,327,921	+		GFF5335	0.88	+0.9
5,327,921	+		GFF5335	0.88	-2.5
5,327,921	+		GFF5335	0.88	+0.8
5,327,923	-		GFF5335	0.88	-1.0
5,327,929	-		GFF5335	0.89	-0.2
5,327,929	-		GFF5335	0.89	-0.9
5,327,930	-		GFF5335	0.89	-2.2
5,327,936	-		GFF5335	0.89	-0.6
5,327,938	+		GFF5335	0.89	+0.1
5,327,945	+		GFF5335	0.89	-0.5
5,327,945	+		GFF5335	0.89	+0.0
5,327,945	+		GFF5335	0.89	-0.8
5,327,945	+		GFF5335	0.89	-1.6
5,327,945	+		GFF5335	0.89	-0.5
5,327,945	+		GFF5335	0.89	-1.4
5,327,945	+		GFF5335	0.89	-0.4
5,327,945	+		GFF5335	0.89	+0.4
5,327,950	+		GFF5335	0.90	-0.8
5,327,950	+		GFF5335	0.90	-2.1
5,327,952	+		GFF5335	0.90	-2.3
5,327,953	-		GFF5335	0.90	+0.5
5,327,953	-		GFF5335	0.90	+0.8
5,327,953	-		GFF5335	0.90	+0.2
5,327,953	-		GFF5335	0.90	-0.5
5,327,953	-		GFF5335	0.90	-2.2
5,327,953	-		GFF5335	0.90	-1.6
5,327,953	-		GFF5335	0.90	-0.3
5,327,953	-		GFF5335	0.90	-0.2
5,327,953	-		GFF5335	0.90	-1.7
5,327,953	-		GFF5335	0.90	-2.6
5,327,953	-		GFF5335	0.90	-1.7
5,327,953	-		GFF5335	0.90	-1.2
5,327,953	-		GFF5335	0.90	-0.3
5,327,953	-		GFF5335	0.90	-1.2
5,327,953	-		GFF5335	0.90	-0.3
5,327,953	-		GFF5335	0.90	-1.1
5,327,953	-		GFF5335	0.90	-0.7
5,327,958	-		GFF5335	0.90	-1.7
5,327,963	+				+0.3
5,327,963	+				-1.8
5,327,974	+				+0.7
5,327,984	-				-2.0
5,327,990	-				-1.4
5,327,995	+				-1.2
5,327,997	+				-0.4
5,327,998	-				-0.3
5,328,001	+				-1.6
5,328,010	-				-0.1
5,328,029	+				-1.1
5,328,037	-				-2.0
5,328,037	-				+0.3
5,328,037	-				-0.4
5,328,037	-				-1.8
5,328,037	-				-1.5
5,328,054	-				-1.6
5,328,056	+				-0.8
5,328,057	+				-2.5
5,328,058	+				-0.3
5,328,064	-				+1.5
5,328,064	-				-1.4
5,328,064	-				-1.1
5,328,073	+				+0.3
5,328,075	+				-0.2
5,328,075	+				-0.6
5,328,075	+				-1.9
5,328,075	+				+0.4
5,328,086	-				+0.1
5,328,112	-				-1.0
5,328,114	+				-0.7
5,328,122	-				-1.2
5,328,124	+				-2.3
5,328,129	+				-0.4
5,328,132	-				-1.5
5,328,134	+				+0.2
5,328,134	+				-0.7
5,328,137	-				-1.0
5,328,137	-				+0.6
5,328,151	-				-2.1
5,328,154	+				-0.2
5,328,154	+				+0.6
5,328,154	+				-0.7
5,328,162	-				-0.4
5,328,162	-				+0.1
5,328,162	-				-0.8
5,328,202	-				-0.8
5,328,207	-				-1.4
5,328,207	-				+0.1
5,328,207	-				+0.2
5,328,235	-				+0.3
5,328,240	-				-0.3
5,328,258	+				-0.5
5,328,284	-				+0.1
5,328,292	-				+0.1
5,328,298	+				+0.2
5,328,298	+				-1.2
5,328,298	+				+0.1
5,328,306	-				-0.7
5,328,306	-				-0.3
5,328,326	-				+0.1
5,328,326	-				-0.5
5,328,336	-				-1.6
5,328,338	-				-0.9
5,328,352	+				-1.0
5,328,383	-				-2.3
5,328,393	+				-1.2
5,328,427	+				+0.9
5,328,435	+				+0.2
5,328,439	-				-0.9
5,328,439	-				-2.0
5,328,458	-				-0.2
5,328,460	+				-1.1
5,328,460	+				-0.6
5,328,475	+				-0.4
5,328,475	+				-0.5
5,328,483	+				+0.3
5,328,491	-				-2.4
5,328,491	-				-1.4
5,328,493	+				+0.1
5,328,502	-				-0.6
5,328,503	+				+0.5
5,328,503	+				-0.0
5,328,511	-				-1.0
5,328,511	-				-1.6
5,328,511	-				-2.2
5,328,528	-				-1.7
5,328,528	-				-2.1
5,328,551	+				+0.0
5,328,554	-				-1.6
5,328,559	-				-1.0
5,328,602	+				-0.5
5,328,611	+				-0.1
5,328,617	+				-1.8
5,328,617	+				-0.9
5,328,617	+				-0.2
5,328,617	+				-0.3
5,328,625	-				-0.1
5,328,625	-				-0.1
5,328,627	+				+0.4
5,328,650	+				-1.2
5,328,661	+				-1.6
5,328,671	+				-0.8
5,328,688	-				+0.0
5,328,691	+				-0.5
5,328,693	+				-1.2
5,328,693	+				-1.9
5,328,693	+				-1.6
5,328,694	-				-0.5
5,328,698	-				+0.6
5,328,699	+				-2.8
5,328,701	-				-1.2
5,328,701	-				-0.3
5,328,706	-				-2.1
5,328,709	+				-1.7
5,328,727	-				-0.9
5,328,729	+				-0.4
5,328,729	+				-0.4
5,328,729	+				+0.2
5,328,733	-				-1.0
5,328,737	-				-2.3
5,328,737	-				-0.2
5,328,761	+		GFF5336	0.12	-0.2
5,328,789	+		GFF5336	0.14	-0.9
5,328,789	+		GFF5336	0.14	+0.1
5,328,789	+		GFF5336	0.14	+0.1
5,328,795	+		GFF5336	0.14	+1.0
5,328,795	+		GFF5336	0.14	-0.3
5,328,796	+		GFF5336	0.14	+0.0
5,328,796	+		GFF5336	0.14	-0.5
5,328,803	+		GFF5336	0.15	-0.4
5,328,803	-		GFF5336	0.15	-1.6
5,328,803	-		GFF5336	0.15	-0.6
5,328,803	-		GFF5336	0.15	-0.9
5,328,803	-		GFF5336	0.15	-0.6
5,328,803	-		GFF5336	0.15	-0.2
5,328,811	-		GFF5336	0.15	+0.6
5,328,814	-		GFF5336	0.16	-0.3
5,328,814	-		GFF5336	0.16	-0.3
5,328,819	+		GFF5336	0.16	-0.2
5,328,825	+		GFF5336	0.17	-0.5
5,328,832	-		GFF5336	0.17	-0.3
5,328,836	+		GFF5336	0.17	-0.2
5,328,838	-		GFF5336	0.18	-1.0
5,328,855	+		GFF5336	0.19	+1.7
5,328,855	+		GFF5336	0.19	-2.0
5,328,912	+		GFF5336	0.23	+0.1
5,328,912	+		GFF5336	0.23	+0.1
5,328,912	+		GFF5336	0.23	-1.3
5,328,913	-		GFF5336	0.23	+0.2
5,328,920	-		GFF5336	0.24	-1.6
5,328,920	-		GFF5336	0.24	-0.4
5,328,920	-		GFF5336	0.24	-0.2
5,328,922	-		GFF5336	0.24	+0.1
5,328,945	-		GFF5336	0.26	-0.3
5,328,947	+		GFF5336	0.26	-3.0
5,328,947	+		GFF5336	0.26	-1.0
5,328,947	+		GFF5336	0.26	+0.1
5,328,947	+		GFF5336	0.26	-1.8
5,328,949	-		GFF5336	0.26	-1.9
5,328,953	-		GFF5336	0.26	-3.2
5,328,955	-		GFF5336	0.27	-1.8
5,328,955	-		GFF5336	0.27	-0.5
5,328,955	-		GFF5336	0.27	-2.2
5,328,965	+		GFF5336	0.27	-2.3
5,328,973	+		GFF5336	0.28	-0.9
5,328,998	+		GFF5336	0.30	-1.8
5,329,006	-		GFF5336	0.30	-0.8
5,329,019	+		GFF5336	0.31	+0.3
5,329,038	-		GFF5336	0.33	-1.1
5,329,038	-		GFF5336	0.33	-0.2
5,329,053	-		GFF5336	0.34	-0.9
5,329,053	-		GFF5336	0.34	-0.4
5,329,053	-		GFF5336	0.34	-1.5
5,329,053	-		GFF5336	0.34	-1.1
5,329,053	-		GFF5336	0.34	-2.4
5,329,063	+		GFF5336	0.35	-1.8
5,329,068	+		GFF5336	0.35	+0.4
5,329,072	+		GFF5336	0.35	-0.4
5,329,073	+		GFF5336	0.36	-1.0
5,329,073	+		GFF5336	0.36	-0.9
5,329,073	+		GFF5336	0.36	-0.0
5,329,073	+		GFF5336	0.36	+0.2
5,329,073	+		GFF5336	0.36	-1.6
5,329,073	+		GFF5336	0.36	+0.1
5,329,073	+		GFF5336	0.36	+0.1
5,329,073	+		GFF5336	0.36	+0.4
5,329,076	-		GFF5336	0.36	+0.3
5,329,078	+		GFF5336	0.36	-2.3
5,329,078	+		GFF5336	0.36	-0.3
5,329,078	+		GFF5336	0.36	-1.8
5,329,078	+		GFF5336	0.36	-0.1
5,329,080	-		GFF5336	0.36	-1.2
5,329,081	-		GFF5336	0.36	-1.1
5,329,081	-		GFF5336	0.36	-0.4
5,329,081	-		GFF5336	0.36	+0.2
5,329,081	-		GFF5336	0.36	-1.1
5,329,081	-		GFF5336	0.36	-0.2
5,329,086	-		GFF5336	0.37	-0.5
5,329,086	-		GFF5336	0.37	-2.2
5,329,086	-		GFF5336	0.37	-0.1
5,329,086	-		GFF5336	0.37	-1.0
5,329,086	-		GFF5336	0.37	-0.4
5,329,086	-		GFF5336	0.37	-0.8
5,329,091	-		GFF5336	0.37	-0.2
5,329,112	-		GFF5336	0.39	-1.9
5,329,113	+		GFF5336	0.39	-0.1
5,329,114	-		GFF5336	0.39	+0.7
5,329,114	-		GFF5336	0.39	-1.2
5,329,125	+		GFF5336	0.40	+1.4
5,329,125	+		GFF5336	0.40	-1.8
5,329,130	+		GFF5336	0.40	-1.0
5,329,153	-		GFF5336	0.42	+0.3
5,329,153	-		GFF5336	0.42	-1.0
5,329,171	+		GFF5336	0.43	-0.6
5,329,171	+		GFF5336	0.43	-1.0
5,329,179	-		GFF5336	0.44	+0.4
5,329,198	+		GFF5336	0.45	-0.0
5,329,198	+		GFF5336	0.45	+0.7
5,329,198	+		GFF5336	0.45	-2.5
5,329,206	-		GFF5336	0.46	+0.0
5,329,206	-		GFF5336	0.46	-0.3
5,329,206	-		GFF5336	0.46	+0.6
5,329,206	-		GFF5336	0.46	-0.7
5,329,206	-		GFF5336	0.46	-0.2
5,329,206	-		GFF5336	0.46	-0.4
5,329,206	-		GFF5336	0.46	-1.9
5,329,213	+		GFF5336	0.46	-0.3
5,329,221	-		GFF5336	0.47	-0.2
5,329,228	+		GFF5336	0.47	-0.1
5,329,246	+		GFF5336	0.49	-1.0
5,329,250	-		GFF5336	0.49	+0.3
5,329,254	-		GFF5336	0.49	+0.2
5,329,256	+		GFF5336	0.50	-1.0
5,329,256	+		GFF5336	0.50	-0.4
5,329,263	+		GFF5336	0.50	-0.6
5,329,264	-		GFF5336	0.50	-0.4
5,329,267	+		GFF5336	0.50	+0.7
5,329,267	+		GFF5336	0.50	-2.4
5,329,267	+		GFF5336	0.50	-0.5
5,329,267	+		GFF5336	0.50	-0.6
5,329,267	+		GFF5336	0.50	-0.6
5,329,267	+		GFF5336	0.50	-1.9
5,329,267	+		GFF5336	0.50	-0.6
5,329,267	+		GFF5336	0.50	-2.5
5,329,267	+		GFF5336	0.50	-1.6
5,329,267	+		GFF5336	0.50	-1.2
5,329,267	+		GFF5336	0.50	+0.5
5,329,267	+		GFF5336	0.50	+0.0
5,329,267	+		GFF5336	0.50	+0.0
5,329,267	+		GFF5336	0.50	-1.1
5,329,267	+		GFF5336	0.50	-1.4
5,329,267	+		GFF5336	0.50	-0.2
5,329,267	+		GFF5336	0.50	-0.5
5,329,267	+		GFF5336	0.50	-1.6
5,329,267	+		GFF5336	0.50	-0.5
5,329,267	+		GFF5336	0.50	-0.5
5,329,267	+		GFF5336	0.50	-0.2
5,329,275	-		GFF5336	0.51	-0.6
5,329,275	-		GFF5336	0.51	-0.7
5,329,275	-		GFF5336	0.51	-2.3
5,329,275	-		GFF5336	0.51	-1.9
5,329,275	-		GFF5336	0.51	-0.1
5,329,275	-		GFF5336	0.51	+1.8
5,329,275	-		GFF5336	0.51	-0.6
5,329,275	-		GFF5336	0.51	-0.1
5,329,275	-		GFF5336	0.51	+0.5
5,329,275	-		GFF5336	0.51	-1.4
5,329,275	-		GFF5336	0.51	-2.1
5,329,275	-		GFF5336	0.51	-1.2
5,329,275	-		GFF5336	0.51	-0.7
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5,329,275	-		GFF5336	0.51	-0.6
5,329,275	-		GFF5336	0.51	-0.1
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5,329,344	+		GFF5336	0.56	-2.4
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5,329,352	-		GFF5336	0.57	-1.5
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5,329,352	-		GFF5336	0.57	-0.6
5,329,352	-		GFF5336	0.57	+0.3
5,329,352	-		GFF5336	0.57	-2.0
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5,329,352	-		GFF5336	0.57	-0.3
5,329,352	-		GFF5336	0.57	+1.3
5,329,352	-		GFF5336	0.57	-0.8
5,329,352	-		GFF5336	0.57	-1.3
5,329,352	-		GFF5336	0.57	-0.5
5,329,352	-		GFF5336	0.57	+0.0
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5,329,352	-		GFF5336	0.57	+1.0
5,329,352	-		GFF5336	0.57	-1.6
5,329,352	-		GFF5336	0.57	-0.4
5,329,352	-		GFF5336	0.57	+0.6
5,329,352	-		GFF5336	0.57	+0.2
5,329,356	+		GFF5336	0.57	-1.5
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5,329,361	+		GFF5336	0.58	-0.9
5,329,361	+		GFF5336	0.58	-0.4
5,329,361	+		GFF5336	0.58	-2.6
5,329,361	+		GFF5336	0.58	-1.5
5,329,361	+		GFF5336	0.58	-1.9
5,329,361	+		GFF5336	0.58	-0.2
5,329,364	-		GFF5336	0.58	-2.7
5,329,364	-		GFF5336	0.58	-0.4
5,329,368	+		GFF5336	0.58	-1.2
5,329,416	+		GFF5336	0.62	-0.4
5,329,421	+		GFF5336	0.62	-1.8
5,329,421	+		GFF5336	0.62	-0.4
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5,329,453	+		GFF5336	0.65	-1.3
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5,329,474	+		GFF5336	0.66	-0.5
5,329,474	+		GFF5336	0.66	-0.7
5,329,474	+		GFF5336	0.66	-0.8
5,329,474	+		GFF5336	0.66	+0.5
5,329,476	+		GFF5336	0.66	-2.2
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5,329,479	+		GFF5336	0.67	-0.8
5,329,479	+		GFF5336	0.67	-0.5
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5,329,482	-		GFF5336	0.67	-0.2
5,329,482	-		GFF5336	0.67	-1.4
5,329,482	-		GFF5336	0.67	-0.6
5,329,484	+		GFF5336	0.67	-0.8
5,329,484	+		GFF5336	0.67	-3.1
5,329,484	+		GFF5336	0.67	-1.3
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5,329,487	-		GFF5336	0.67	-0.1
5,329,487	-		GFF5336	0.67	-0.4
5,329,487	-		GFF5336	0.67	-0.5
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5,329,495	+		GFF5336	0.68	-1.9
5,329,495	+		GFF5336	0.68	-1.1
5,329,495	+		GFF5336	0.68	-0.3
5,329,495	+		GFF5336	0.68	-1.2
5,329,497	-		GFF5336	0.68	-1.5
5,329,500	+		GFF5336	0.68	-2.5
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5,329,503	-		GFF5336	0.69	-0.7
5,329,503	-		GFF5336	0.69	+0.1
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5,329,536	-		GFF5336	0.71	-0.9
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5,329,555	+		GFF5336	0.72	-0.5
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5,329,593	+		GFF5336	0.75	-0.2
5,329,640	+		GFF5336	0.79	-1.7
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5,329,648	-		GFF5336	0.80	-0.2
5,329,670	-		GFF5336	0.81	-1.9
5,329,674	+		GFF5336	0.82	-1.6
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5,329,710	+		GFF5336	0.84	-1.2
5,329,710	+		GFF5336	0.84	-1.4
5,329,711	+		GFF5336	0.84	-0.8
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5,329,718	-		GFF5336	0.85	+0.5
5,329,718	-		GFF5336	0.85	+0.7
5,329,718	-		GFF5336	0.85	-0.5
5,329,718	-		GFF5336	0.85	-0.5
5,329,718	-		GFF5336	0.85	-0.2
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5,329,729	-		GFF5336	0.86	+0.1
5,329,729	-		GFF5336	0.86	-1.8
5,329,744	-		GFF5336	0.87	-1.0
5,329,744	-		GFF5336	0.87	+0.9
5,329,752	+		GFF5336	0.88	-0.0
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5,329,784	+				-0.8
5,329,792	-				-0.9
5,329,804	-				-0.2
5,329,827	-				-0.3
5,329,852	+				-0.3
5,329,854	+				-0.9
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5,329,860	-				-1.4
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5,329,870	+				-1.6
5,329,870	-				+1.0
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5,329,882	-				-1.2
5,329,883	-				+1.0
5,329,887	+				-0.7
5,329,888	-				-1.4
5,329,890	-				-0.3
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5,329,895	-				-2.2
5,329,895	-				-1.3
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5,329,907	+				-0.8
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5,329,915	-				+0.1
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5,329,932	-				-0.9
5,329,933	-				-1.0
5,329,942	-				-0.9
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5,330,049	-		GFF5337	0.24	-2.2
5,330,049	-		GFF5337	0.24	-2.4
5,330,061	+		GFF5337	0.25	-3.3
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5,330,524	-				-0.2
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5,330,580	-				-1.4
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5,330,604	-				+0.4
5,330,608	+				+0.4
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5,330,639	+				-1.7
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5,330,689	-				+0.1
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