Strain Fitness in Sphingobium sp. HT1-2 around GFF527

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
523,851	+		GFF526	0.35	-0.3
523,854	-		GFF526	0.35	-1.1
523,856	+		GFF526	0.35	-0.5
523,856	+		GFF526	0.35	+0.5
523,859	-		GFF526	0.35	+1.1
523,859	-		GFF526	0.35	+1.5
523,864	-		GFF526	0.36	+1.4
523,864	-		GFF526	0.36	-0.4
523,864	-		GFF526	0.36	-2.7
523,864	-		GFF526	0.36	-0.8
523,869	+		GFF526	0.36	-0.6
523,871	-		GFF526	0.36	-0.4
523,876	-		GFF526	0.37	-0.7
523,880	-		GFF526	0.37	+0.1
523,882	+		GFF526	0.37	+0.3
523,895	-		GFF526	0.38	-0.2
523,929	-		GFF526	0.41	-1.2
523,939	+		GFF526	0.41	-0.5
523,942	+		GFF526	0.42	-2.0
523,959	-		GFF526	0.43	+0.0
523,959	-		GFF526	0.43	-1.5
523,959	-		GFF526	0.43	-0.9
523,999	+		GFF526	0.46	-0.3
524,004	+		GFF526	0.46	-0.8
524,007	-		GFF526	0.47	+0.5
524,009	+		GFF526	0.47	-2.0
524,028	-		GFF526	0.48	-0.4
524,043	+		GFF526	0.49	-0.0
524,051	-		GFF526	0.50	-0.2
524,054	+		GFF526	0.50	+0.1
524,067	+		GFF526	0.51	-0.3
524,083	-		GFF526	0.52	+1.1
524,085	+		GFF526	0.52	-1.4
524,085	+		GFF526	0.52	+1.6
524,085	+		GFF526	0.52	-1.0
524,085	+		GFF526	0.52	-0.2
524,085	+		GFF526	0.52	-2.2
524,088	-		GFF526	0.53	-1.6
524,093	-		GFF526	0.53	-2.0
524,119	-		GFF526	0.55	-0.8
524,161	-		GFF526	0.58	+0.1
524,179	+		GFF526	0.59	+0.3
524,179	+		GFF526	0.59	-0.0
524,224	+		GFF526	0.63	+1.1
524,271	-		GFF526	0.66	-1.5
524,289	-		GFF526	0.68	-0.2
524,300	-		GFF526	0.69	+0.0
524,319	-		GFF526	0.70	-0.5
524,329	+		GFF526	0.71	-0.4
524,360	-		GFF526	0.73	+0.3
524,360	-		GFF526	0.73	-0.2
524,360	-		GFF526	0.73	-1.2
524,378	-		GFF526	0.74	+0.4
524,425	+		GFF526	0.78	-1.3
524,425	+		GFF526	0.78	-0.8
524,425	+		GFF526	0.78	+0.5
524,425	+		GFF526	0.78	-0.3
524,425	+		GFF526	0.78	+0.6
524,425	+		GFF526	0.78	-0.9
524,425	+		GFF526	0.78	-1.7
524,425	+		GFF526	0.78	+0.0
524,425	+		GFF526	0.78	-0.2
524,425	+		GFF526	0.78	-0.5
524,425	+		GFF526	0.78	-0.9
524,425	+		GFF526	0.78	-0.7
524,433	-		GFF526	0.79	-0.7
524,433	-		GFF526	0.79	-0.9
524,433	-		GFF526	0.79	-0.1
524,433	-		GFF526	0.79	-0.9
524,433	-		GFF526	0.79	+0.9
524,433	-		GFF526	0.79	-1.4
524,433	-		GFF526	0.79	-3.0
524,433	-		GFF526	0.79	-1.5
524,433	-		GFF526	0.79	+0.0
524,433	-		GFF526	0.79	-1.0
524,435	+		GFF526	0.79	+0.8
524,435	+		GFF526	0.79	-0.0
524,438	-		GFF526	0.79	+0.1
524,438	-		GFF526	0.79	-0.3
524,438	-		GFF526	0.79	-0.7
524,478	+		GFF526	0.82	-2.8
524,478	+		GFF526	0.82	-2.4
524,486	-		GFF526	0.83	-1.0
524,490	+		GFF526	0.83	+0.3
524,525	-		GFF526	0.85	+0.4
524,526	-		GFF526	0.86	-1.1
524,530	-		GFF526	0.86	-0.5
524,552	-		GFF526	0.88	-0.2
524,565	+		GFF526	0.88	-1.6
524,609	+				-0.1
524,609	+				-1.6
524,769	+				-1.9
524,778	-				+0.2
524,841	+				-0.1
524,841	+				-1.8
524,849	-				-1.6
524,849	-				-0.4
524,850	+				+0.2
524,858	-				-0.7
524,860	+				-1.2
524,872	+				-0.1
524,872	+				-0.3
524,872	+				+0.9
524,872	+				-0.4
524,872	+				-1.9
524,872	+				+0.5
524,872	+				+0.2
524,880	-				-1.3
524,880	-				-1.4
524,880	-				-0.6
524,880	-				-1.2
524,880	-				+0.1
524,880	-				-0.4
524,880	-				+0.4
524,912	-				+0.9
524,916	+				-0.5
524,928	-				-0.3
524,953	+		GFF527	0.12	-0.7
524,955	-		GFF527	0.12	+0.2
524,970	+		GFF527	0.14	+0.0
524,973	-		GFF527	0.14	-1.4
524,979	+		GFF527	0.15	-0.3
524,989	+		GFF527	0.16	-0.1
524,998	+		GFF527	0.17	-0.8
524,998	+		GFF527	0.17	-0.5
525,012	-		GFF527	0.18	-0.6
525,025	+		GFF527	0.20	+0.4
525,056	-		GFF527	0.23	+0.6
525,078	-		GFF527	0.25	+0.6
525,080	+		GFF527	0.26	+0.1
525,088	-		GFF527	0.27	-0.1
525,112	-		GFF527	0.29	+1.3
525,121	-		GFF527	0.30	+1.6
525,141	+		GFF527	0.32	-0.2
525,141	+		GFF527	0.32	-0.3
525,141	+		GFF527	0.32	+0.4
525,141	+		GFF527	0.32	-0.6
525,149	-		GFF527	0.33	+1.0
525,149	-		GFF527	0.33	-0.5
525,149	-		GFF527	0.33	+0.6
525,149	-		GFF527	0.33	-2.5
525,149	-		GFF527	0.33	+0.5
525,149	-		GFF527	0.33	+0.6
525,149	-		GFF527	0.33	-0.4
525,151	+		GFF527	0.33	-1.2
525,159	+		GFF527	0.34	+0.1
525,196	-		GFF527	0.38	-1.5
525,272	+		GFF527	0.46	-0.2
525,289	+		GFF527	0.48	-1.1
525,289	+		GFF527	0.48	-0.3
525,289	+		GFF527	0.48	+0.9
525,289	+		GFF527	0.48	-0.3
525,289	+		GFF527	0.48	+0.4
525,297	-		GFF527	0.49	-0.8
525,297	-		GFF527	0.49	-0.5
525,297	-		GFF527	0.49	-2.0
525,302	+		GFF527	0.50	+0.5
525,326	-		GFF527	0.52	-0.3
525,330	-		GFF527	0.53	-0.7
525,348	+		GFF527	0.55	-0.6
525,371	-		GFF527	0.57	+0.3
525,373	+		GFF527	0.57	+0.3
525,373	+		GFF527	0.57	-0.6
525,373	+		GFF527	0.57	-1.6
525,373	+		GFF527	0.57	+0.4
525,373	+		GFF527	0.57	+0.2
525,373	+		GFF527	0.57	-1.1
525,373	+		GFF527	0.57	+0.5
525,373	+		GFF527	0.57	+1.9
525,373	+		GFF527	0.57	-0.5
525,373	+		GFF527	0.57	+0.4
525,373	+		GFF527	0.57	-0.2
525,373	+		GFF527	0.57	+0.7
525,373	+		GFF527	0.57	+0.6
525,373	+		GFF527	0.57	-0.1
525,373	+		GFF527	0.57	+0.2
525,379	+		GFF527	0.58	-1.5
525,379	+		GFF527	0.58	+0.9
525,381	-		GFF527	0.58	+0.4
525,381	-		GFF527	0.58	-0.3
525,381	-		GFF527	0.58	-0.6
525,381	-		GFF527	0.58	-1.9
525,381	-		GFF527	0.58	-0.1
525,381	-		GFF527	0.58	+1.0
525,381	-		GFF527	0.58	-0.6
525,381	-		GFF527	0.58	-0.2
525,381	-		GFF527	0.58	-2.1
525,381	-		GFF527	0.58	+0.7
525,381	-		GFF527	0.58	+0.1
525,387	-		GFF527	0.59	-2.0
525,393	+		GFF527	0.60	+0.4
525,393	+		GFF527	0.60	-1.9
525,401	-		GFF527	0.60	+0.6
525,401	-		GFF527	0.60	-1.1
525,413	+		GFF527	0.62	+0.9
525,421	-		GFF527	0.63	+0.1
525,451	+		GFF527	0.66	+0.1
525,455	+		GFF527	0.66	-0.4
525,487	-		GFF527	0.70	-2.1
525,510	-		GFF527	0.72	+0.7
525,516	+		GFF527	0.73	-0.3
525,516	+		GFF527	0.73	-1.3
525,518	+		GFF527	0.73	-1.4
525,524	-		GFF527	0.74	-0.8
525,527	+		GFF527	0.74	+0.0
525,535	-		GFF527	0.75	+0.5
525,537	+		GFF527	0.75	-0.8
525,537	+		GFF527	0.75	+0.0
525,537	+		GFF527	0.75	+0.7
525,537	+		GFF527	0.75	-1.1
525,545	-		GFF527	0.76	-0.7
525,552	+		GFF527	0.77	-1.0
525,557	+		GFF527	0.77	-0.2
525,560	-		GFF527	0.78	+0.1
525,562	-		GFF527	0.78	-0.9
525,570	+		GFF527	0.79	-0.1
525,578	-		GFF527	0.80	+1.1
525,578	-		GFF527	0.80	-2.4
525,583	-		GFF527	0.80	-2.1
525,609	-		GFF527	0.83	+1.1
525,631	-		GFF527	0.85	+0.7
525,668	+		GFF527	0.89	+0.1
525,668	+		GFF527	0.89	-0.2
525,668	+		GFF527	0.89	+1.3
525,668	+		GFF527	0.89	-0.5
525,668	+		GFF527	0.89	-1.5
525,668	+		GFF527	0.89	-0.1
525,668	+		GFF527	0.89	-0.3
525,668	+		GFF527	0.89	-2.0
525,668	+		GFF527	0.89	-0.5
525,668	+		GFF527	0.89	+0.4
525,668	+		GFF527	0.89	+0.9
525,668	+		GFF527	0.89	+0.1
525,668	+		GFF527	0.89	+0.1
525,668	+		GFF527	0.89	+0.2
525,676	-				+1.3
525,676	-				-1.0
525,676	-				+0.6
525,676	-				-0.8
525,676	-				-0.5
525,676	-				-1.4
525,676	-				-0.3
525,676	-				-0.4
525,676	-				+0.6
525,676	-				-0.3
525,690	-				-0.4
525,736	+				+0.5
525,744	-				-0.6
525,769	-				-0.7
525,779	-				-1.7
525,779	-				-2.6
525,785	+				-0.4
525,785	+				-0.9
525,795	-				+0.2
525,831	+				+0.0
525,831	+				-0.7
525,891	+				-0.2
525,892	-				-2.2
525,895	+				+0.6
525,930	+				-1.2
525,938	+				+0.9
525,951	-				-0.0
525,956	+				+0.6
525,964	-				-0.5
525,964	-				-0.7
525,964	-				-1.5
525,969	-				-0.8
525,982	-				-3.0
526,002	+		GFF528	0.11	-1.7
526,004	+		GFF528	0.11	-0.7
526,005	-		GFF528	0.11	-1.6
526,010	-		GFF528	0.11	+0.2
526,010	-		GFF528	0.11	-0.4
526,010	-		GFF528	0.11	-0.2
526,010	-		GFF528	0.11	-1.0
526,011	+		GFF528	0.11	+0.7
526,012	-		GFF528	0.12	-0.5
526,016	+		GFF528	0.12	-0.4
526,016	+		GFF528	0.12	+0.5
526,038	-		GFF528	0.14	-2.2
526,045	-		GFF528	0.14	+0.4
526,046	-		GFF528	0.15	-0.5
526,047	-		GFF528	0.15	-2.6
526,052	-		GFF528	0.15	-1.6
526,067	-		GFF528	0.16	+0.1
526,067	-		GFF528	0.16	+0.1
526,097	-		GFF528	0.19	-1.7
526,113	+		GFF528	0.20	-1.2
526,119	+		GFF528	0.21	-0.1
526,121	-		GFF528	0.21	+0.0
526,127	-		GFF528	0.22	-1.7
526,129	+		GFF528	0.22	-1.2
526,132	-		GFF528	0.22	-0.6
526,132	-		GFF528	0.22	-1.0
526,137	-		GFF528	0.22	-0.3
526,137	-		GFF528	0.22	+0.1
526,137	-		GFF528	0.22	-0.5
526,144	+		GFF528	0.23	-1.6
526,144	+		GFF528	0.23	-1.2
526,147	-		GFF528	0.23	-0.2
526,152	-		GFF528	0.24	+0.5
526,152	-		GFF528	0.24	-1.5
526,226	+		GFF528	0.30	+1.2
526,231	+		GFF528	0.30	-0.3
526,231	+		GFF528	0.30	-1.0
526,239	-		GFF528	0.31	-0.5
526,242	+		GFF528	0.31	+0.3
526,242	+		GFF528	0.31	-2.2
526,251	-		GFF528	0.32	-0.2
526,252	+		GFF528	0.32	-2.4
526,252	+		GFF528	0.32	-0.8
526,260	-		GFF528	0.33	-0.9
526,260	-		GFF528	0.33	+1.3
526,270	-		GFF528	0.34	-1.2
526,300	+		GFF528	0.36	+1.2
526,300	+		GFF528	0.36	-1.5
526,306	+		GFF528	0.37	+0.5
526,308	-		GFF528	0.37	+0.1
526,308	-		GFF528	0.37	-1.3
526,314	-		GFF528	0.38	-1.8
526,314	-		GFF528	0.38	-1.9
526,318	+		GFF528	0.38	-2.7
526,323	+		GFF528	0.38	-0.1
526,323	+		GFF528	0.38	-0.1
526,341	-		GFF528	0.40	-0.1
526,342	-		GFF528	0.40	+0.6
526,342	-		GFF528	0.40	-2.5
526,389	+		GFF528	0.44	-1.5
526,405	-		GFF528	0.46	-1.1
526,405	-		GFF528	0.46	-0.1
526,405	-		GFF528	0.46	-1.7
526,406	+		GFF528	0.46	-0.4
526,406	+		GFF528	0.46	-0.4
526,437	-		GFF528	0.48	-1.4
526,447	-		GFF528	0.49	-0.2
526,457	-		GFF528	0.50	-0.3
526,472	+		GFF528	0.51	-1.6
526,472	+		GFF528	0.51	-1.1
526,472	+		GFF528	0.51	-1.2
526,472	+		GFF528	0.51	-1.5
526,472	+		GFF528	0.51	-2.0
526,472	+		GFF528	0.51	-0.1
526,475	-		GFF528	0.52	+1.6
526,480	-		GFF528	0.52	-0.2
526,480	-		GFF528	0.52	-0.4
526,480	-		GFF528	0.52	-1.3
526,480	-		GFF528	0.52	-0.2
526,482	+		GFF528	0.52	-1.7
526,482	+		GFF528	0.52	-1.2
526,482	+		GFF528	0.52	-0.6
526,482	+		GFF528	0.52	+0.6
526,482	+		GFF528	0.52	-1.0
526,482	+		GFF528	0.52	-2.1
526,490	-		GFF528	0.53	+0.1
526,490	-		GFF528	0.53	-1.6
526,490	-		GFF528	0.53	-0.1
526,490	-		GFF528	0.53	-0.5
526,495	+		GFF528	0.53	-1.9
526,495	+		GFF528	0.53	-1.3
526,495	+		GFF528	0.53	-0.7
526,501	+		GFF528	0.54	-1.5
526,503	-		GFF528	0.54	-0.8
526,513	-		GFF528	0.55	-0.9
526,517	-		GFF528	0.55	+0.8
526,519	+		GFF528	0.55	-0.2
526,519	+		GFF528	0.55	-0.9
526,530	+		GFF528	0.56	+0.0
526,538	-		GFF528	0.57	+0.0
526,572	+		GFF528	0.60	-1.3
526,602	-		GFF528	0.63	-0.1
526,625	+		GFF528	0.65	-1.6
526,625	+		GFF528	0.65	+0.4
526,625	+		GFF528	0.65	-0.6
526,633	-		GFF528	0.65	-1.0
526,634	+		GFF528	0.65	-1.5
526,642	-		GFF528	0.66	+0.2
526,644	+		GFF528	0.66	-0.2
526,652	-		GFF528	0.67	-1.3
526,659	+		GFF528	0.67	+1.0
526,659	+		GFF528	0.67	-1.0
526,667	-		GFF528	0.68	+0.1
526,688	+		GFF528	0.70	-2.6
526,692	+		GFF528	0.70	-0.7
526,714	+		GFF528	0.72	-1.6
526,714	+		GFF528	0.72	-1.3
526,722	-		GFF528	0.73	-0.1
526,763	-		GFF528	0.76	+0.0