Strain Fitness in Sphingobium sp. HT1-2 around GFF5260

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,249,946	+		GFF5258	0.11	-0.2
5,249,947	-		GFF5258	0.11	-0.1
5,249,952	-		GFF5258	0.13	+0.1
5,249,954	+		GFF5258	0.13	-1.1
5,249,954	-		GFF5258	0.13	-1.7
5,249,954	-		GFF5258	0.13	-0.8
5,249,964	+		GFF5258	0.17	+0.4
5,249,966	+		GFF5258	0.18	-1.2
5,249,972	+		GFF5258	0.20	+1.0
5,249,975	-		GFF5258	0.21	-1.9
5,249,978	+		GFF5258	0.22	-0.2
5,249,986	-		GFF5258	0.25	-0.4
5,249,996	+		GFF5258	0.29	-1.1
5,249,996	+		GFF5258	0.29	+0.1
5,249,996	+		GFF5258	0.29	+0.1
5,250,004	-		GFF5258	0.32	-0.3
5,250,008	+		GFF5258	0.33	-0.1
5,250,034	+		GFF5258	0.42	-0.5
5,250,042	-		GFF5258	0.45	-1.0
5,250,053	+		GFF5258	0.49	-1.7
5,250,053	+		GFF5258	0.49	-1.2
5,250,053	+		GFF5258	0.49	+0.1
5,250,142	+		GFF5258	0.82	-1.0
5,250,174	+				+0.5
5,250,177	+				+0.1
5,250,182	-				+0.7
5,250,182	-				+0.7
5,250,188	+				-2.0
5,250,202	-				-2.5
5,250,202	-				-1.0
5,250,207	-				+0.1
5,250,229	+				-1.0
5,250,231	+				-0.2
5,250,237	-				+0.8
5,250,237	-				-1.5
5,250,239	+				-0.8
5,250,239	+				+0.4
5,250,247	-				-0.2
5,250,247	-				-1.7
5,250,247	-				-0.3
5,250,247	-				+0.3
5,250,261	+				+0.4
5,250,264	-				-0.9
5,250,281	+				-0.4
5,250,294	-				-0.3
5,250,313	-				-1.5
5,250,318	+				-0.9
5,250,326	-				-0.1
5,250,326	-				+0.2
5,250,354	+				-0.3
5,250,375	+				-0.4
5,250,387	+				-0.8
5,250,398	+				-0.2
5,250,398	+				+0.7
5,250,401	-				-0.1
5,250,405	+				-0.6
5,250,410	+				-1.3
5,250,418	-				+0.5
5,250,420	-				-0.1
5,250,447	+				-0.2
5,250,453	-				-0.2
5,250,466	+		GFF5259	0.12	-0.4
5,250,475	+		GFF5259	0.13	+1.1
5,250,475	+		GFF5259	0.13	-0.6
5,250,488	+		GFF5259	0.16	-0.7
5,250,488	+		GFF5259	0.16	+0.0
5,250,494	+		GFF5259	0.17	+0.1
5,250,496	-		GFF5259	0.17	-0.0
5,250,501	+		GFF5259	0.18	+0.9
5,250,501	+		GFF5259	0.18	-0.7
5,250,509	-		GFF5259	0.20	-1.8
5,250,509	-		GFF5259	0.20	-0.9
5,250,515	+		GFF5259	0.21	+0.2
5,250,544	-		GFF5259	0.26	+0.3
5,250,546	-		GFF5259	0.26	+1.0
5,250,547	+		GFF5259	0.27	-0.6
5,250,556	+		GFF5259	0.28	-0.1
5,250,559	+		GFF5259	0.29	-1.9
5,250,559	+		GFF5259	0.29	+1.1
5,250,559	+		GFF5259	0.29	-0.9
5,250,559	+		GFF5259	0.29	+0.4
5,250,559	+		GFF5259	0.29	-0.2
5,250,559	+		GFF5259	0.29	-0.7
5,250,559	+		GFF5259	0.29	-0.6
5,250,562	-		GFF5259	0.29	-0.8
5,250,567	-		GFF5259	0.30	+0.3
5,250,567	-		GFF5259	0.30	+0.2
5,250,567	-		GFF5259	0.30	-0.2
5,250,567	-		GFF5259	0.30	-0.1
5,250,569	+		GFF5259	0.31	-0.8
5,250,569	+		GFF5259	0.31	-0.3
5,250,569	+		GFF5259	0.31	-2.0
5,250,569	+		GFF5259	0.31	+0.1
5,250,578	-		GFF5259	0.32	-0.6
5,250,583	+		GFF5259	0.33	+1.3
5,250,591	+		GFF5259	0.35	+0.7
5,250,598	+		GFF5259	0.36	-1.6
5,250,600	+		GFF5259	0.36	+0.4
5,250,600	+		GFF5259	0.36	+0.9
5,250,602	+		GFF5259	0.37	-0.9
5,250,615	+		GFF5259	0.39	-1.9
5,250,615	+		GFF5259	0.39	-1.7
5,250,615	+		GFF5259	0.39	+0.8
5,250,615	+		GFF5259	0.39	-0.5
5,250,615	+		GFF5259	0.39	-1.3
5,250,617	+		GFF5259	0.40	-2.1
5,250,623	-		GFF5259	0.41	-1.1
5,250,623	-		GFF5259	0.41	-0.9
5,250,623	-		GFF5259	0.41	+0.8
5,250,625	+		GFF5259	0.41	-1.9
5,250,625	+		GFF5259	0.41	+0.0
5,250,625	+		GFF5259	0.41	+0.9
5,250,630	+		GFF5259	0.42	+0.2
5,250,630	+		GFF5259	0.42	+1.3
5,250,630	+		GFF5259	0.42	+0.6
5,250,630	+		GFF5259	0.42	-0.5
5,250,630	+		GFF5259	0.42	-0.1
5,250,630	+		GFF5259	0.42	-0.5
5,250,630	+		GFF5259	0.42	-1.1
5,250,630	+		GFF5259	0.42	-0.3
5,250,630	+		GFF5259	0.42	+0.7
5,250,630	+		GFF5259	0.42	-1.2
5,250,630	+		GFF5259	0.42	+0.3
5,250,630	+		GFF5259	0.42	+0.4
5,250,633	-		GFF5259	0.43	+0.8
5,250,633	-		GFF5259	0.43	+0.1
5,250,635	+		GFF5259	0.43	-0.8
5,250,638	+		GFF5259	0.44	-0.0
5,250,638	-		GFF5259	0.44	+0.1
5,250,638	-		GFF5259	0.44	+1.0
5,250,638	-		GFF5259	0.44	-2.1
5,250,638	-		GFF5259	0.44	-0.5
5,250,638	-		GFF5259	0.44	-0.6
5,250,638	-		GFF5259	0.44	-1.2
5,250,638	-		GFF5259	0.44	-1.7
5,250,638	-		GFF5259	0.44	+1.1
5,250,638	-		GFF5259	0.44	-0.9
5,250,648	+		GFF5259	0.45	-0.2
5,250,648	+		GFF5259	0.45	+1.1
5,250,648	+		GFF5259	0.45	-1.1
5,250,648	+		GFF5259	0.45	+0.0
5,250,648	+		GFF5259	0.45	+0.4
5,250,656	-		GFF5259	0.47	-0.5
5,250,656	-		GFF5259	0.47	+0.9
5,250,656	-		GFF5259	0.47	-0.2
5,250,656	-		GFF5259	0.47	-1.7
5,250,656	-		GFF5259	0.47	-0.2
5,250,656	-		GFF5259	0.47	+0.5
5,250,656	-		GFF5259	0.47	+0.0
5,250,656	-		GFF5259	0.47	-0.4
5,250,656	-		GFF5259	0.47	+0.3
5,250,683	+		GFF5259	0.52	-0.2
5,250,691	-		GFF5259	0.53	-0.6
5,250,692	-		GFF5259	0.54	-2.1
5,250,692	-		GFF5259	0.54	-0.3
5,250,761	-		GFF5259	0.66	-0.3
5,250,780	+		GFF5259	0.70	-0.4
5,250,780	+		GFF5259	0.70	-0.7
5,250,788	-		GFF5259	0.71	-0.4
5,250,795	+		GFF5259	0.73	-2.3
5,250,799	+		GFF5259	0.73	-0.6
5,250,803	-		GFF5259	0.74	-0.6
5,250,826	-		GFF5259	0.78	-1.8
5,250,834	-		GFF5259	0.80	+0.1
5,250,912	+				-0.8
5,250,924	+				-0.3
5,250,924	+				+0.1
5,250,924	+				-1.1
5,250,924	+				-0.6
5,250,924	+				-1.1
5,250,930	-				-1.3
5,250,932	-				-0.6
5,250,932	-				-2.2
5,250,932	-				-0.6
5,250,932	-				-0.0
5,250,932	-				-0.0
5,250,932	-				-0.1
5,250,956	+				+0.1
5,250,956	+				-0.7
5,251,040	+		GFF5260	0.16	+0.1
5,251,171	-		GFF5260	0.36	-1.7
5,251,576	+				+0.7
5,251,588	+				+0.8
5,251,594	-				-0.6
5,251,604	-				-0.4
5,251,604	-				+1.0
5,251,604	-				-1.2
5,251,645	-				+0.9
5,251,645	-				-1.3
5,251,654	-				+0.1
5,251,690	+				-1.8
5,251,717	-				-0.8
5,251,719	+				-1.1
5,251,719	-				-0.4
5,251,745	-		GFF5261	0.12	+1.0
5,251,790	-		GFF5261	0.29	-0.5
5,251,798	+		GFF5261	0.32	-0.9
5,251,798	+		GFF5261	0.32	-1.6
5,251,810	+		GFF5261	0.37	-0.2
5,251,810	+		GFF5261	0.37	+0.5
5,251,810	+		GFF5261	0.37	-1.2
5,251,810	+		GFF5261	0.37	+0.2
5,251,810	+		GFF5261	0.37	+0.8
5,251,817	+		GFF5261	0.39	-1.0
5,251,818	-		GFF5261	0.40	-0.5
5,251,818	-		GFF5261	0.40	-0.7
5,251,818	-		GFF5261	0.40	+0.4
5,251,818	-		GFF5261	0.40	+1.0
5,251,825	+		GFF5261	0.42	+0.5
5,251,825	+		GFF5261	0.42	+1.0
5,251,832	+		GFF5261	0.45	+0.2
5,251,833	-		GFF5261	0.45	+1.4
5,251,833	-		GFF5261	0.45	+0.2
5,251,833	-		GFF5261	0.45	+0.5
5,251,833	-		GFF5261	0.45	-2.1
5,251,843	-		GFF5261	0.49	-0.7
5,251,849	+		GFF5261	0.51	+0.5
5,251,857	-		GFF5261	0.54	-0.8
5,251,857	-		GFF5261	0.54	-0.1
5,251,869	-		GFF5261	0.59	-0.1
5,251,889	+		GFF5261	0.66	-1.5
5,251,889	+		GFF5261	0.66	-1.1
5,251,889	+		GFF5261	0.66	-0.9
5,251,889	+		GFF5261	0.66	+1.5
5,251,889	+		GFF5261	0.66	+0.3
5,251,897	-		GFF5261	0.69	+0.6
5,251,897	-		GFF5261	0.69	+0.1
5,251,897	-		GFF5261	0.69	-0.7
5,251,897	-		GFF5261	0.69	-0.7
5,251,907	+		GFF5261	0.73	+0.2
5,251,907	+		GFF5261	0.73	-1.5
5,251,913	+		GFF5261	0.75	-0.4
5,251,913	+		GFF5261	0.75	-0.8
5,251,915	-		GFF5261	0.76	-0.2
5,251,915	-		GFF5261	0.76	+0.5
5,251,915	-		GFF5261	0.76	-1.3
5,251,915	-		GFF5261	0.76	-0.0
5,251,915	-		GFF5261	0.76	+0.2
5,251,915	-		GFF5261	0.76	-0.2
5,251,915	-		GFF5261	0.76	-0.4
5,251,915	-		GFF5261	0.76	+0.1
5,251,947	-		GFF5261	0.88	-0.3
5,251,949	+		GFF5261	0.89	+1.2
5,251,949	+		GFF5261	0.89	-0.8
5,251,957	-				-0.4
5,251,957	-				-1.0
5,251,980	+				-0.1
5,251,991	-				-2.5
5,251,995	+				-1.0
5,251,995	+				+1.0
5,251,995	+				+0.3
5,251,995	+				-1.2
5,251,995	+				+0.0
5,251,995	+				-0.1
5,252,000	-				-1.5
5,252,003	-				+0.9
5,252,003	-				-1.3
5,252,003	-				-2.6
5,252,005	+				-1.9
5,252,005	+				+0.1
5,252,008	-				-0.8
5,252,013	-				-1.6
5,252,013	-				+0.9
5,252,015	+				+0.6
5,252,015	+				-0.2
5,252,015	+				-2.3
5,252,015	+				+0.1
5,252,015	+				+0.3
5,252,015	+				-1.6
5,252,015	+				-1.4
5,252,018	-				+1.0
5,252,023	-				-0.5
5,252,023	-				-0.8
5,252,023	-				+1.0
5,252,026	+				-0.0
5,252,034	-				-0.5
5,252,065	+				-1.8
5,252,065	+				+0.5
5,252,065	+				+0.9
5,252,065	+				-0.8
5,252,065	+				+0.4
5,252,073	-				+1.0
5,252,073	-				-1.1
5,252,073	-				-0.9
5,252,073	-				-1.8
5,252,073	-				-0.9
5,252,073	-				-0.0
5,252,073	-				+0.3
5,252,075	+				-0.3
5,252,084	+				-3.0
5,252,084	+				-1.8
5,252,092	-				+0.0
5,252,092	-				-2.6
5,252,105	+				-0.8
5,252,115	-				+1.1
5,252,115	-				-0.6
5,252,172	+		GFF5262	0.16	-0.2
5,252,206	-		GFF5262	0.20	+0.8
5,252,220	+		GFF5262	0.22	-0.9
5,252,228	-		GFF5262	0.23	-0.3
5,252,231	-		GFF5262	0.23	+0.3
5,252,232	+		GFF5262	0.23	-0.2
5,252,240	-		GFF5262	0.24	-0.2
5,252,264	-		GFF5262	0.27	-0.3
5,252,288	+		GFF5262	0.30	-0.6
5,252,304	+		GFF5262	0.32	-0.8
5,252,304	+		GFF5262	0.32	+0.4
5,252,305	-		GFF5262	0.32	-2.2
5,252,307	+		GFF5262	0.32	-0.8
5,252,309	+		GFF5262	0.32	+1.1
5,252,309	+		GFF5262	0.32	-1.3
5,252,309	+		GFF5262	0.32	-0.7
5,252,309	+		GFF5262	0.32	-1.2
5,252,315	-		GFF5262	0.33	-0.2
5,252,317	-		GFF5262	0.33	-1.4
5,252,322	+		GFF5262	0.34	+1.0
5,252,324	+		GFF5262	0.34	+0.4
5,252,327	+		GFF5262	0.35	+0.9
5,252,330	-		GFF5262	0.35	-0.4
5,252,330	-		GFF5262	0.35	+1.3
5,252,330	-		GFF5262	0.35	-1.4
5,252,343	+		GFF5262	0.36	-0.3
5,252,348	+		GFF5262	0.37	-2.0
5,252,348	+		GFF5262	0.37	-0.7
5,252,348	+		GFF5262	0.37	-2.4
5,252,354	-		GFF5262	0.38	+1.1
5,252,356	-		GFF5262	0.38	+0.2
5,252,356	-		GFF5262	0.38	-1.7
5,252,364	+		GFF5262	0.39	-1.9
5,252,370	+		GFF5262	0.40	-0.6
5,252,370	+		GFF5262	0.40	+0.2
5,252,370	+		GFF5262	0.40	-1.0
5,252,370	+		GFF5262	0.40	-0.4
5,252,372	-		GFF5262	0.40	-0.1
5,252,375	+		GFF5262	0.40	-1.2
5,252,375	+		GFF5262	0.40	-0.3
5,252,375	+		GFF5262	0.40	+0.0
5,252,375	+		GFF5262	0.40	-1.1
5,252,375	+		GFF5262	0.40	-2.1
5,252,375	+		GFF5262	0.40	-1.2
5,252,375	+		GFF5262	0.40	-0.2
5,252,375	+		GFF5262	0.40	-0.6
5,252,375	+		GFF5262	0.40	-2.9
5,252,375	+		GFF5262	0.40	+0.2
5,252,377	-		GFF5262	0.41	-0.2
5,252,378	-		GFF5262	0.41	-1.3
5,252,378	-		GFF5262	0.41	-0.5
5,252,383	-		GFF5262	0.41	-0.7
5,252,383	-		GFF5262	0.41	-2.7
5,252,383	-		GFF5262	0.41	-0.6
5,252,383	-		GFF5262	0.41	-1.1
5,252,383	-		GFF5262	0.41	-1.1
5,252,383	-		GFF5262	0.41	-0.5
5,252,391	+		GFF5262	0.42	-1.4
5,252,391	+		GFF5262	0.42	-0.7
5,252,399	-		GFF5262	0.43	-0.1
5,252,399	-		GFF5262	0.43	-1.7
5,252,399	-		GFF5262	0.43	-0.1
5,252,399	-		GFF5262	0.43	-0.3
5,252,412	+		GFF5262	0.45	+0.3
5,252,413	+		GFF5262	0.45	-0.2
5,252,419	+		GFF5262	0.46	+0.0
5,252,441	-		GFF5262	0.48	+0.2
5,252,441	-		GFF5262	0.48	-1.7
5,252,441	-		GFF5262	0.48	-0.0
5,252,462	+		GFF5262	0.51	+0.3
5,252,471	-		GFF5262	0.52	+1.4
5,252,521	+		GFF5262	0.58	+0.1
5,252,568	+		GFF5262	0.64	+1.0
5,252,568	+		GFF5262	0.64	-2.6
5,252,568	+		GFF5262	0.64	-0.2
5,252,568	+		GFF5262	0.64	-0.4
5,252,568	+		GFF5262	0.64	-0.0
5,252,568	+		GFF5262	0.64	+0.7
5,252,576	-		GFF5262	0.65	-0.6
5,252,576	-		GFF5262	0.65	+0.4
5,252,576	-		GFF5262	0.65	-0.3