Strain Fitness in Sphingobium sp. HT1-2 around GFF5214

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5212 and GFF5213 overlap by 4 nucleotidesGFF5213 and GFF5214 are separated by 27 nucleotidesGFF5214 and GFF5215 are separated by 165 nucleotidesGFF5215 and GFF5216 overlap by 10 nucleotides GFF5212 - Acetate kinase (EC 2.7.2.1), at 5,208,478 to 5,209,668 GFF5212 GFF5213 - Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9), at 5,209,665 to 5,210,438 GFF5213 GFF5214 - hypothetical protein, at 5,210,466 to 5,210,885 GFF5214 GFF5215 - hypothetical protein, at 5,211,051 to 5,211,170 GFF5215 GFF5216 - Sodium-transporting ATPase subunit D, at 5,211,161 to 5,212,573 GFF5216 Position (kb) 5210 5211Strain fitness (log2 ratio) -2 -1 0 1at 5209.474 kb on + strand, within GFF5212at 5209.482 kb on - strand, within GFF5212at 5209.517 kb on + strand, within GFF5212at 5209.517 kb on + strand, within GFF5212at 5209.532 kb on - strand, within GFF5212at 5209.534 kb on + strand, within GFF5212at 5209.542 kb on + strand, within GFF5212at 5209.542 kb on + strand, within GFF5212at 5209.550 kb on - strandat 5209.550 kb on - strandat 5209.550 kb on - strandat 5209.570 kb on + strandat 5209.570 kb on + strandat 5209.570 kb on + strandat 5209.572 kb on + strandat 5209.572 kb on + strandat 5209.578 kb on - strandat 5209.578 kb on - strandat 5209.580 kb on - strandat 5209.580 kb on - strandat 5209.588 kb on - strandat 5209.592 kb on + strandat 5209.592 kb on + strandat 5209.600 kb on - strandat 5209.624 kb on - strandat 5209.671 kb on - strandat 5209.701 kb on - strandat 5209.712 kb on - strandat 5209.714 kb on - strandat 5209.722 kb on + strandat 5209.747 kb on - strand, within GFF5213at 5209.753 kb on + strand, within GFF5213at 5209.753 kb on - strand, within GFF5213at 5209.755 kb on + strand, within GFF5213at 5209.761 kb on - strand, within GFF5213at 5209.803 kb on + strand, within GFF5213at 5209.840 kb on - strand, within GFF5213at 5209.842 kb on - strand, within GFF5213at 5209.843 kb on - strand, within GFF5213at 5209.850 kb on - strand, within GFF5213at 5209.894 kb on + strand, within GFF5213at 5209.904 kb on + strand, within GFF5213at 5209.904 kb on + strand, within GFF5213at 5209.912 kb on - strand, within GFF5213at 5209.912 kb on - strand, within GFF5213at 5209.912 kb on - strand, within GFF5213at 5209.912 kb on - strand, within GFF5213at 5209.932 kb on - strand, within GFF5213at 5209.951 kb on + strand, within GFF5213at 5209.998 kb on + strand, within GFF5213at 5209.998 kb on + strand, within GFF5213at 5210.006 kb on - strand, within GFF5213at 5210.006 kb on - strand, within GFF5213at 5210.015 kb on + strand, within GFF5213at 5210.023 kb on - strand, within GFF5213at 5210.083 kb on + strand, within GFF5213at 5210.086 kb on + strand, within GFF5213at 5210.096 kb on - strand, within GFF5213at 5210.113 kb on + strand, within GFF5213at 5210.143 kb on - strand, within GFF5213at 5210.153 kb on + strand, within GFF5213at 5210.153 kb on + strand, within GFF5213at 5210.161 kb on - strand, within GFF5213at 5210.161 kb on - strand, within GFF5213at 5210.203 kb on + strand, within GFF5213at 5210.231 kb on - strand, within GFF5213at 5210.231 kb on - strand, within GFF5213at 5210.233 kb on + strand, within GFF5213at 5210.241 kb on - strand, within GFF5213at 5210.241 kb on - strand, within GFF5213at 5210.252 kb on - strand, within GFF5213at 5210.259 kb on + strand, within GFF5213at 5210.283 kb on - strand, within GFF5213at 5210.283 kb on - strand, within GFF5213at 5210.306 kb on + strand, within GFF5213at 5210.318 kb on + strand, within GFF5213at 5210.318 kb on + strand, within GFF5213at 5210.318 kb on + strand, within GFF5213at 5210.326 kb on - strand, within GFF5213at 5210.332 kb on - strand, within GFF5213at 5210.343 kb on - strand, within GFF5213at 5210.408 kb on + strandat 5210.432 kb on + strandat 5210.434 kb on - strandat 5210.435 kb on - strandat 5210.438 kb on + strandat 5210.453 kb on + strandat 5210.565 kb on + strand, within GFF5214at 5210.592 kb on + strand, within GFF5214at 5210.667 kb on - strand, within GFF5214at 5210.669 kb on - strand, within GFF5214at 5210.752 kb on - strand, within GFF5214at 5210.757 kb on + strand, within GFF5214at 5210.772 kb on + strand, within GFF5214at 5210.780 kb on - strand, within GFF5214at 5210.875 kb on + strandat 5210.880 kb on + strandat 5210.917 kb on - strandat 5210.938 kb on + strandat 5210.938 kb on + strandat 5210.943 kb on + strandat 5210.943 kb on + strandat 5210.946 kb on - strandat 5210.946 kb on - strandat 5210.946 kb on - strandat 5210.946 kb on - strandat 5210.951 kb on - strandat 5211.016 kb on + strandat 5211.030 kb on - strandat 5211.041 kb on + strandat 5211.056 kb on + strandat 5211.056 kb on + strandat 5211.095 kb on + strand, within GFF5215at 5211.103 kb on - strand, within GFF5215at 5211.141 kb on + strand, within GFF5215at 5211.142 kb on - strand, within GFF5215at 5211.165 kb on + strandat 5211.173 kb on - strandat 5211.183 kb on - strandat 5211.196 kb on + strandat 5211.206 kb on - strandat 5211.208 kb on + strandat 5211.213 kb on + strandat 5211.213 kb on + strandat 5211.216 kb on - strandat 5211.221 kb on - strandat 5211.221 kb on - strandat 5211.221 kb on - strandat 5211.235 kb on + strandat 5211.245 kb on - strandat 5211.261 kb on + strandat 5211.298 kb on - strandat 5211.306 kb on - strand, within GFF5216at 5211.308 kb on + strand, within GFF5216at 5211.313 kb on + strand, within GFF5216at 5211.316 kb on - strand, within GFF5216at 5211.316 kb on - strand, within GFF5216at 5211.316 kb on - strand, within GFF5216at 5211.316 kb on - strand, within GFF5216at 5211.316 kb on - strand, within GFF5216at 5211.355 kb on + strand, within GFF5216at 5211.431 kb on + strand, within GFF5216at 5211.431 kb on + strand, within GFF5216at 5211.437 kb on + strand, within GFF5216at 5211.439 kb on - strand, within GFF5216at 5211.439 kb on - strand, within GFF5216at 5211.439 kb on - strand, within GFF5216at 5211.445 kb on + strand, within GFF5216at 5211.463 kb on + strand, within GFF5216at 5211.471 kb on - strand, within GFF5216at 5211.507 kb on + strand, within GFF5216at 5211.515 kb on - strand, within GFF5216at 5211.530 kb on - strand, within GFF5216at 5211.562 kb on + strand, within GFF5216at 5211.562 kb on + strand, within GFF5216at 5211.573 kb on + strand, within GFF5216at 5211.573 kb on + strand, within GFF5216at 5211.581 kb on - strand, within GFF5216at 5211.604 kb on + strand, within GFF5216at 5211.610 kb on + strand, within GFF5216at 5211.612 kb on - strand, within GFF5216at 5211.618 kb on - strand, within GFF5216at 5211.618 kb on - strand, within GFF5216at 5211.628 kb on + strand, within GFF5216at 5211.628 kb on + strand, within GFF5216at 5211.643 kb on + strand, within GFF5216at 5211.644 kb on - strand, within GFF5216at 5211.644 kb on - strand, within GFF5216at 5211.646 kb on + strand, within GFF5216at 5211.654 kb on - strand, within GFF5216at 5211.654 kb on - strand, within GFF5216at 5211.654 kb on - strand, within GFF5216at 5211.661 kb on + strand, within GFF5216at 5211.668 kb on + strand, within GFF5216at 5211.673 kb on + strand, within GFF5216at 5211.694 kb on + strand, within GFF5216at 5211.696 kb on + strand, within GFF5216at 5211.702 kb on - strand, within GFF5216at 5211.704 kb on - strand, within GFF5216at 5211.704 kb on - strand, within GFF5216at 5211.712 kb on - strand, within GFF5216at 5211.744 kb on + strand, within GFF5216at 5211.744 kb on + strand, within GFF5216at 5211.751 kb on - strand, within GFF5216at 5211.752 kb on - strand, within GFF5216at 5211.760 kb on - strand, within GFF5216at 5211.761 kb on + strand, within GFF5216at 5211.762 kb on - strand, within GFF5216at 5211.771 kb on + strand, within GFF5216at 5211.771 kb on + strand, within GFF5216at 5211.779 kb on - strand, within GFF5216at 5211.779 kb on - strand, within GFF5216at 5211.779 kb on - strand, within GFF5216at 5211.784 kb on + strand, within GFF5216at 5211.784 kb on - strand, within GFF5216at 5211.853 kb on - strand, within GFF5216at 5211.854 kb on - strand, within GFF5216at 5211.859 kb on + strand, within GFF5216at 5211.867 kb on - strand, within GFF5216at 5211.872 kb on - strand, within GFF5216

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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5,209,474 + GFF5212 0.84 +0.8
5,209,482 - GFF5212 0.84 +1.2
5,209,517 + GFF5212 0.87 +0.5
5,209,517 + GFF5212 0.87 -0.1
5,209,532 - GFF5212 0.88 -0.2
5,209,534 + GFF5212 0.89 -0.2
5,209,542 + GFF5212 0.89 +0.2
5,209,542 + GFF5212 0.89 +0.4
5,209,550 - -0.7
5,209,550 - +0.4
5,209,550 - +0.5
5,209,570 + -0.2
5,209,570 + -0.3
5,209,570 + -0.8
5,209,572 + -0.4
5,209,572 + +0.7
5,209,578 - +0.4
5,209,578 - -0.6
5,209,580 - +0.6
5,209,580 - -0.5
5,209,588 - +0.0
5,209,592 + +0.2
5,209,592 + -0.5
5,209,600 - -0.2
5,209,624 - -0.0
5,209,671 - +0.1
5,209,701 - -0.2
5,209,712 - -0.2
5,209,714 - +0.4
5,209,722 + -0.1
5,209,747 - GFF5213 0.11 -0.2
5,209,753 + GFF5213 0.11 -0.7
5,209,753 - GFF5213 0.11 -0.6
5,209,755 + GFF5213 0.12 -0.2
5,209,761 - GFF5213 0.12 +0.8
5,209,803 + GFF5213 0.18 +0.5
5,209,840 - GFF5213 0.23 -0.6
5,209,842 - GFF5213 0.23 -0.4
5,209,843 - GFF5213 0.23 -2.0
5,209,850 - GFF5213 0.24 -0.1
5,209,894 + GFF5213 0.30 -1.6
5,209,904 + GFF5213 0.31 +1.1
5,209,904 + GFF5213 0.31 +0.9
5,209,912 - GFF5213 0.32 -0.2
5,209,912 - GFF5213 0.32 -0.7
5,209,912 - GFF5213 0.32 -0.1
5,209,912 - GFF5213 0.32 -1.8
5,209,932 - GFF5213 0.34 +0.5
5,209,951 + GFF5213 0.37 +0.4
5,209,998 + GFF5213 0.43 -0.2
5,209,998 + GFF5213 0.43 +1.4
5,210,006 - GFF5213 0.44 +0.4
5,210,006 - GFF5213 0.44 +0.0
5,210,015 + GFF5213 0.45 +0.6
5,210,023 - GFF5213 0.46 +0.1
5,210,083 + GFF5213 0.54 +0.4
5,210,086 + GFF5213 0.54 +0.4
5,210,096 - GFF5213 0.56 +0.4
5,210,113 + GFF5213 0.58 +1.2
5,210,143 - GFF5213 0.62 +0.8
5,210,153 + GFF5213 0.63 -0.2
5,210,153 + GFF5213 0.63 +0.0
5,210,161 - GFF5213 0.64 +0.3
5,210,161 - GFF5213 0.64 +0.5
5,210,203 + GFF5213 0.70 +0.9
5,210,231 - GFF5213 0.73 +0.9
5,210,231 - GFF5213 0.73 +0.0
5,210,233 + GFF5213 0.73 -1.8
5,210,241 - GFF5213 0.74 +0.2
5,210,241 - GFF5213 0.74 -0.0
5,210,252 - GFF5213 0.76 +0.1
5,210,259 + GFF5213 0.77 +0.7
5,210,283 - GFF5213 0.80 +0.2
5,210,283 - GFF5213 0.80 +0.8
5,210,306 + GFF5213 0.83 -0.6
5,210,318 + GFF5213 0.84 -1.4
5,210,318 + GFF5213 0.84 +0.1
5,210,318 + GFF5213 0.84 -1.0
5,210,326 - GFF5213 0.85 +1.0
5,210,332 - GFF5213 0.86 -0.2
5,210,343 - GFF5213 0.88 +1.0
5,210,408 + +0.8
5,210,432 + +0.2
5,210,434 - -0.4
5,210,435 - -0.3
5,210,438 + -1.2
5,210,453 + +0.2
5,210,565 + GFF5214 0.24 +0.8
5,210,592 + GFF5214 0.30 +0.3
5,210,667 - GFF5214 0.48 -0.6
5,210,669 - GFF5214 0.48 +0.1
5,210,752 - GFF5214 0.68 +0.4
5,210,757 + GFF5214 0.69 -0.2
5,210,772 + GFF5214 0.73 -1.1
5,210,780 - GFF5214 0.75 -1.1
5,210,875 + +0.8
5,210,880 + +0.2
5,210,917 - -0.1
5,210,938 + -0.6
5,210,938 + -2.0
5,210,943 + +0.7
5,210,943 + -1.4
5,210,946 - -0.8
5,210,946 - +1.0
5,210,946 - -0.3
5,210,946 - +0.1
5,210,951 - +0.2
5,211,016 + -0.8
5,211,030 - +0.0
5,211,041 + +1.5
5,211,056 + -0.3
5,211,056 + +0.1
5,211,095 + GFF5215 0.37 +0.9
5,211,103 - GFF5215 0.43 -0.6
5,211,141 + GFF5215 0.75 -0.2
5,211,142 - GFF5215 0.76 -1.8
5,211,165 + -0.5
5,211,173 - +1.6
5,211,183 - -0.6
5,211,196 + +0.1
5,211,206 - -1.3
5,211,208 + +1.3
5,211,213 + +1.4
5,211,213 + +0.3
5,211,216 - +0.3
5,211,221 - -0.4
5,211,221 - -0.2
5,211,221 - +0.4
5,211,235 + +0.7
5,211,245 - -1.2
5,211,261 + +1.1
5,211,298 - -0.9
5,211,306 - GFF5216 0.10 -0.5
5,211,308 + GFF5216 0.10 -1.2
5,211,313 + GFF5216 0.11 -0.3
5,211,316 - GFF5216 0.11 -1.6
5,211,316 - GFF5216 0.11 +0.5
5,211,316 - GFF5216 0.11 -1.3
5,211,316 - GFF5216 0.11 -0.2
5,211,316 - GFF5216 0.11 -1.1
5,211,355 + GFF5216 0.14 -0.0
5,211,431 + GFF5216 0.19 +0.1
5,211,431 + GFF5216 0.19 -0.3
5,211,437 + GFF5216 0.20 +0.5
5,211,439 - GFF5216 0.20 -1.4
5,211,439 - GFF5216 0.20 -0.9
5,211,439 - GFF5216 0.20 +0.3
5,211,445 + GFF5216 0.20 -0.2
5,211,463 + GFF5216 0.21 +0.7
5,211,471 - GFF5216 0.22 -1.1
5,211,507 + GFF5216 0.24 -0.6
5,211,515 - GFF5216 0.25 +1.1
5,211,530 - GFF5216 0.26 +0.1
5,211,562 + GFF5216 0.28 -0.0
5,211,562 + GFF5216 0.28 +1.2
5,211,573 + GFF5216 0.29 +0.3
5,211,573 + GFF5216 0.29 +0.4
5,211,581 - GFF5216 0.30 -1.5
5,211,604 + GFF5216 0.31 -0.2
5,211,610 + GFF5216 0.32 +0.2
5,211,612 - GFF5216 0.32 +0.7
5,211,618 - GFF5216 0.32 -0.0
5,211,618 - GFF5216 0.32 +1.3
5,211,628 + GFF5216 0.33 -0.2
5,211,628 + GFF5216 0.33 -0.1
5,211,643 + GFF5216 0.34 +0.1
5,211,644 - GFF5216 0.34 +0.4
5,211,644 - GFF5216 0.34 -2.5
5,211,646 + GFF5216 0.34 -0.9
5,211,654 - GFF5216 0.35 -0.2
5,211,654 - GFF5216 0.35 +0.5
5,211,654 - GFF5216 0.35 -1.1
5,211,661 + GFF5216 0.35 +0.9
5,211,668 + GFF5216 0.36 +1.2
5,211,673 + GFF5216 0.36 -0.9
5,211,694 + GFF5216 0.38 -0.4
5,211,696 + GFF5216 0.38 +0.2
5,211,702 - GFF5216 0.38 -2.2
5,211,704 - GFF5216 0.38 +0.5
5,211,704 - GFF5216 0.38 -0.3
5,211,712 - GFF5216 0.39 +0.6
5,211,744 + GFF5216 0.41 +0.3
5,211,744 + GFF5216 0.41 +0.5
5,211,751 - GFF5216 0.42 +0.4
5,211,752 - GFF5216 0.42 -0.0
5,211,760 - GFF5216 0.42 -0.2
5,211,761 + GFF5216 0.42 -1.0
5,211,762 - GFF5216 0.43 +0.2
5,211,771 + GFF5216 0.43 +1.6
5,211,771 + GFF5216 0.43 +0.4
5,211,779 - GFF5216 0.44 +1.2
5,211,779 - GFF5216 0.44 +0.2
5,211,779 - GFF5216 0.44 +1.4
5,211,784 + GFF5216 0.44 +0.6
5,211,784 - GFF5216 0.44 +1.0
5,211,853 - GFF5216 0.49 -0.5
5,211,854 - GFF5216 0.49 +0.1
5,211,859 + GFF5216 0.49 -0.2
5,211,867 - GFF5216 0.50 -0.5
5,211,872 - GFF5216 0.50 +1.4

Or see this region's nucleotide sequence