Strain Fitness in Sphingobium sp. HT1-2 around GFF5136

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,127,070	-		GFF5134	0.83	-0.7
5,127,088	+		GFF5134	0.84	-0.4
5,127,088	+		GFF5134	0.84	-0.0
5,127,096	-		GFF5134	0.84	-2.2
5,127,096	-		GFF5134	0.84	+0.0
5,127,118	-		GFF5134	0.85	+0.4
5,127,120	-		GFF5134	0.85	-1.1
5,127,124	+		GFF5134	0.85	+0.5
5,127,131	+		GFF5134	0.85	+1.1
5,127,158	-		GFF5134	0.86	-0.1
5,127,164	+		GFF5134	0.87	-0.4
5,127,180	+		GFF5134	0.87	-0.2
5,127,181	+		GFF5134	0.87	-0.4
5,127,188	+		GFF5134	0.88	+0.1
5,127,189	+		GFF5134	0.88	+0.2
5,127,191	+		GFF5134	0.88	-0.4
5,127,194	-		GFF5134	0.88	-1.5
5,127,194	-		GFF5134	0.88	-0.5
5,127,204	-		GFF5134	0.88	-0.5
5,127,215	-		GFF5134	0.89	-0.9
5,127,215	-		GFF5134	0.89	-0.4
5,127,229	-		GFF5134	0.89	-0.3
5,127,261	-				-1.0
5,127,299	+				+0.1
5,127,307	+				+0.6
5,127,324	+				-0.6
5,127,324	+				-0.7
5,127,324	+				-1.2
5,127,327	-				+0.5
5,127,327	-				-0.1
5,127,332	-				-1.4
5,127,335	-				-0.0
5,127,345	-				+1.0
5,127,363	+				-0.9
5,127,363	+				-2.7
5,127,363	+				-1.3
5,127,368	+				-0.8
5,127,368	+				-0.2
5,127,368	+				-0.2
5,127,376	-				-0.3
5,127,384	+				-2.9
5,127,392	-				-1.2
5,127,463	+				-0.7
5,127,464	+				-1.2
5,127,481	+				-0.5
5,127,495	+				-0.6
5,127,503	-				-0.6
5,127,503	-				+0.4
5,127,503	-				+0.7
5,127,511	+				-0.8
5,127,519	-				-1.5
5,127,524	-				+0.4
5,127,530	-				+1.2
5,127,530	-				-1.7
5,127,530	-				-0.6
5,127,530	-				-1.3
5,127,540	+				+0.4
5,127,548	-		GFF5135	0.11	+0.3
5,127,550	+		GFF5135	0.12	-0.1
5,127,554	+		GFF5135	0.13	-1.1
5,127,558	-		GFF5135	0.13	-0.2
5,127,562	-		GFF5135	0.14	+0.4
5,127,572	-		GFF5135	0.16	-0.3
5,127,574	+		GFF5135	0.17	+0.8
5,127,574	+		GFF5135	0.17	-1.9
5,127,582	-		GFF5135	0.18	-1.1
5,127,582	-		GFF5135	0.18	-1.4
5,127,582	-		GFF5135	0.18	+0.7
5,127,582	-		GFF5135	0.18	-1.5
5,127,582	-		GFF5135	0.18	+0.1
5,127,582	-		GFF5135	0.18	+1.4
5,127,582	-		GFF5135	0.18	+1.1
5,127,582	-		GFF5135	0.18	+0.1
5,127,596	+		GFF5135	0.21	+0.7
5,127,596	+		GFF5135	0.21	-0.6
5,127,596	+		GFF5135	0.21	+0.1
5,127,601	+		GFF5135	0.22	-2.2
5,127,609	+		GFF5135	0.24	+0.5
5,127,627	+		GFF5135	0.28	-2.4
5,127,656	+		GFF5135	0.34	+0.1
5,127,689	+		GFF5135	0.41	-0.3
5,127,689	+		GFF5135	0.41	-0.0
5,127,689	+		GFF5135	0.41	-0.3
5,127,689	+		GFF5135	0.41	+0.2
5,127,694	+		GFF5135	0.42	-0.1
5,127,702	-		GFF5135	0.44	-1.2
5,127,774	+		GFF5135	0.59	-0.3
5,127,803	+		GFF5135	0.65	-1.5
5,127,808	-		GFF5135	0.66	-0.0
5,127,813	+		GFF5135	0.67	+0.0
5,127,824	+		GFF5135	0.69	+0.4
5,127,829	+		GFF5135	0.70	-0.9
5,127,829	+		GFF5135	0.70	-0.9
5,127,829	+		GFF5135	0.70	+0.4
5,127,829	+		GFF5135	0.70	+0.4
5,127,829	+		GFF5135	0.70	+0.4
5,127,829	+		GFF5135	0.70	-0.0
5,127,829	+		GFF5135	0.70	+0.9
5,127,829	+		GFF5135	0.70	-1.1
5,127,837	-		GFF5135	0.72	+0.4
5,127,837	-		GFF5135	0.72	-0.5
5,127,837	-		GFF5135	0.72	+0.4
5,127,837	-		GFF5135	0.72	-0.7
5,127,837	-		GFF5135	0.72	+0.5
5,127,837	-		GFF5135	0.72	-0.3
5,127,837	-		GFF5135	0.72	+0.6
5,127,837	-		GFF5135	0.72	+0.7
5,127,837	-		GFF5135	0.72	-0.1
5,127,839	+		GFF5135	0.72	-0.0
5,127,839	+		GFF5135	0.72	+1.3
5,127,879	+		GFF5135	0.81	+0.7
5,127,884	-		GFF5135	0.82	+0.2
5,127,887	-		GFF5135	0.82	-1.2
5,127,893	+		GFF5135	0.84	+0.3
5,127,893	+		GFF5135	0.84	-1.4
5,127,893	+		GFF5135	0.84	-0.6
5,127,893	+		GFF5135	0.84	-0.4
5,127,908	+		GFF5135	0.87	+0.8
5,127,940	+				-2.9
5,127,940	-				+0.5
5,127,941	+				+0.2
5,127,941	+				-1.5
5,127,985	-				-1.1
5,128,007	-				-2.2
5,128,050	-				-0.2
5,128,057	+				+0.3
5,128,065	+		GFF5136	0.11	-2.8
5,128,112	+		GFF5136	0.16	+0.2
5,128,136	+		GFF5136	0.19	+0.3
5,128,163	+		GFF5136	0.22	-0.5
5,128,163	+		GFF5136	0.22	+0.3
5,128,218	+		GFF5136	0.28	+1.0
5,128,227	+		GFF5136	0.29	-0.2
5,128,232	+		GFF5136	0.30	-0.3
5,128,237	+		GFF5136	0.30	+1.0
5,128,240	-		GFF5136	0.31	+0.3
5,128,276	+		GFF5136	0.35	-1.3
5,128,280	+		GFF5136	0.35	+0.4
5,128,284	-		GFF5136	0.35	-1.4
5,128,307	+		GFF5136	0.38	+0.1
5,128,325	+		GFF5136	0.40	-0.7
5,128,325	+		GFF5136	0.40	-1.1
5,128,325	+		GFF5136	0.40	+0.6
5,128,333	-		GFF5136	0.41	-0.9
5,128,344	+		GFF5136	0.42	-0.0
5,128,344	+		GFF5136	0.42	-0.4
5,128,352	-		GFF5136	0.43	-1.2
5,128,352	-		GFF5136	0.43	+1.1
5,128,352	-		GFF5136	0.43	-0.4
5,128,354	+		GFF5136	0.43	-0.1
5,128,354	+		GFF5136	0.43	-1.0
5,128,354	+		GFF5136	0.43	+0.2
5,128,354	+		GFF5136	0.43	-2.1
5,128,357	-		GFF5136	0.44	-2.5
5,128,362	-		GFF5136	0.44	-0.3
5,128,362	-		GFF5136	0.44	+0.1
5,128,362	-		GFF5136	0.44	-0.7
5,128,364	+		GFF5136	0.45	-0.0
5,128,364	+		GFF5136	0.45	+0.8
5,128,364	+		GFF5136	0.45	-0.0
5,128,372	-		GFF5136	0.45	+0.7
5,128,395	-		GFF5136	0.48	+0.4
5,128,395	-		GFF5136	0.48	-1.0
5,128,407	+		GFF5136	0.49	-1.1
5,128,414	+		GFF5136	0.50	-0.1
5,128,415	-		GFF5136	0.50	+0.5
5,128,431	+		GFF5136	0.52	+0.8
5,128,431	+		GFF5136	0.52	-0.6
5,128,436	+		GFF5136	0.53	+0.7
5,128,446	+		GFF5136	0.54	-0.0
5,128,454	-		GFF5136	0.55	-0.4
5,128,468	+		GFF5136	0.56	-3.3
5,128,473	+		GFF5136	0.57	+0.6
5,128,478	+		GFF5136	0.57	-0.3
5,128,478	+		GFF5136	0.57	-1.0
5,128,478	+		GFF5136	0.57	-0.5
5,128,478	+		GFF5136	0.57	+1.1
5,128,478	+		GFF5136	0.57	+1.0
5,128,478	+		GFF5136	0.57	+0.3
5,128,478	+		GFF5136	0.57	-2.1
5,128,478	+		GFF5136	0.57	-0.6
5,128,478	+		GFF5136	0.57	-0.6
5,128,478	+		GFF5136	0.57	-2.1
5,128,478	+		GFF5136	0.57	-1.5
5,128,478	+		GFF5136	0.57	+0.7
5,128,478	+		GFF5136	0.57	-1.2
5,128,478	+		GFF5136	0.57	-1.6
5,128,478	+		GFF5136	0.57	-1.3
5,128,478	+		GFF5136	0.57	-0.6
5,128,478	+		GFF5136	0.57	+0.8
5,128,478	+		GFF5136	0.57	-0.2
5,128,478	+		GFF5136	0.57	-1.0
5,128,481	-		GFF5136	0.58	-0.2
5,128,481	-		GFF5136	0.58	+0.2
5,128,486	-		GFF5136	0.58	-0.7
5,128,486	-		GFF5136	0.58	-0.3
5,128,486	-		GFF5136	0.58	-0.7
5,128,486	-		GFF5136	0.58	-0.2
5,128,486	-		GFF5136	0.58	-0.6
5,128,486	-		GFF5136	0.58	-0.9
5,128,486	-		GFF5136	0.58	-0.0
5,128,486	-		GFF5136	0.58	-0.9
5,128,486	-		GFF5136	0.58	-0.2
5,128,486	-		GFF5136	0.58	-0.5
5,128,486	-		GFF5136	0.58	-0.6
5,128,486	-		GFF5136	0.58	+0.1
5,128,486	-		GFF5136	0.58	-0.2
5,128,486	-		GFF5136	0.58	-2.0
5,128,486	-		GFF5136	0.58	-0.3
5,128,486	-		GFF5136	0.58	+0.3
5,128,486	-		GFF5136	0.58	-1.0
5,128,490	+		GFF5136	0.59	-0.3
5,128,491	-		GFF5136	0.59	-0.5
5,128,491	-		GFF5136	0.59	-1.2
5,128,491	-		GFF5136	0.59	+0.2
5,128,491	-		GFF5136	0.59	+0.1
5,128,491	-		GFF5136	0.59	-2.4
5,128,506	-		GFF5136	0.61	-1.4
5,128,569	+		GFF5136	0.68	-0.5
5,128,569	+		GFF5136	0.68	+1.1
5,128,569	+		GFF5136	0.68	-0.3
5,128,569	+		GFF5136	0.68	+0.3
5,128,572	-		GFF5136	0.68	-0.9
5,128,575	+		GFF5136	0.68	-0.7
5,128,575	+		GFF5136	0.68	+0.2
5,128,576	+		GFF5136	0.68	-0.4
5,128,577	-		GFF5136	0.69	+0.4
5,128,577	-		GFF5136	0.69	-0.1
5,128,577	-		GFF5136	0.69	-0.1
5,128,577	-		GFF5136	0.69	+0.3
5,128,577	-		GFF5136	0.69	-0.7
5,128,583	-		GFF5136	0.69	+0.1
5,128,583	-		GFF5136	0.69	-0.2
5,128,583	-		GFF5136	0.69	+0.1
5,128,583	-		GFF5136	0.69	+0.3
5,128,584	-		GFF5136	0.69	-0.7
5,128,598	+		GFF5136	0.71	-1.6
5,128,598	+		GFF5136	0.71	+0.7
5,128,632	+		GFF5136	0.75	+0.3
5,128,635	-		GFF5136	0.75	-1.0
5,128,661	-		GFF5136	0.78	-1.3
5,128,661	-		GFF5136	0.78	-0.8
5,128,669	-		GFF5136	0.79	-0.7
5,128,669	-		GFF5136	0.79	+1.2
5,128,689	+		GFF5136	0.81	+0.2
5,128,707	-		GFF5136	0.83	-1.2
5,128,710	+		GFF5136	0.84	+0.8
5,128,735	+		GFF5136	0.86	+1.0
5,128,743	-		GFF5136	0.87	-0.6
5,128,762	-		GFF5136	0.89	+1.2
5,128,779	-				-1.6
5,128,791	-				+0.6
5,128,792	-				+0.9
5,128,802	+				+1.2
5,128,807	-				-0.5
5,128,812	+				-2.0
5,128,818	+				+0.7
5,128,818	+				-0.3
5,128,833	+				+0.2
5,128,841	-				-0.4
5,128,862	-				-0.8
5,128,926	+				-1.2
5,128,956	-				-1.8
5,128,999	+				-0.0
5,129,003	+				+0.2
5,129,003	+				-0.3
5,129,004	+				+0.6
5,129,023	-				-1.4
5,129,030	-				+0.1
5,129,040	-				+1.1
5,129,040	-				-0.4
5,129,080	-				+0.7
5,129,096	+				-0.1
5,129,101	+				+0.2
5,129,120	+				-0.5
5,129,120	+				-0.4
5,129,120	+				-0.5
5,129,120	+				-0.2
5,129,128	-				+0.8
5,129,133	-				+0.2
5,129,152	-				-0.3
5,129,154	+				+0.4
5,129,156	+				+0.1
5,129,156	+				+0.6
5,129,157	-				-1.1
5,129,159	-				-1.3
5,129,163	+				-0.4
5,129,163	+				-0.1
5,129,163	+				-0.0
5,129,164	-				-1.8
5,129,164	-				-0.6
5,129,177	+				+1.1
5,129,185	-				-0.5
5,129,185	-				+0.1
5,129,185	-				-0.4
5,129,187	+				+0.7
5,129,187	+				-1.4
5,129,187	+				-0.2
5,129,195	-				+0.5
5,129,195	-				-0.1
5,129,200	+				-0.1
5,129,205	+				-0.2
5,129,205	+				+1.0
5,129,208	-				-1.3
5,129,208	-				+1.6
5,129,213	-				-0.8
5,129,236	-				-0.1
5,129,238	-				+0.1
5,129,375	+		GFF5137	0.32	+0.1
5,129,410	+		GFF5137	0.37	-1.3
5,129,438	-		GFF5137	0.42	-1.6
5,129,438	-		GFF5137	0.42	-1.7
5,129,443	-		GFF5137	0.43	-2.1
5,129,443	-		GFF5137	0.43	+0.7
5,129,443	-		GFF5137	0.43	+0.9
5,129,448	-		GFF5137	0.44	-0.7
5,129,448	-		GFF5137	0.44	-1.1
5,129,453	-		GFF5137	0.44	-1.5
5,129,453	-		GFF5137	0.44	-0.2
5,129,453	-		GFF5137	0.44	+0.6
5,129,453	-		GFF5137	0.44	-0.4
5,129,493	+		GFF5137	0.51	-0.1
5,129,501	-		GFF5137	0.52	-2.1
5,129,501	-		GFF5137	0.52	-1.3
5,129,503	+		GFF5137	0.53	-0.3
5,129,662	+		GFF5137	0.79	-1.1
5,129,662	+		GFF5137	0.79	-0.5
5,129,670	-		GFF5137	0.80	-0.6
5,129,698	+		GFF5137	0.85	-2.0
5,129,744	-				-0.3